Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ocimum_20tenuiflorum_20[genbank_20GCA_5F001278415.1_202015-09-02] 121,993 sequences; 332,616,730 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq109031 111 1e-19 seq70367 107 2e-18 seq99159 96.9 3e-15 seq111813 91.5 1e-13 >seq109031 Length=8095 Score = 111 bits (122), Expect = 1e-19 Identities = 164/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||| || |||||||| ||||| || ||||| || || || | ||| |||| ||| | Sbjct 77 ATGCAGATCTTTGTCAAGACTTTGACCGGCAAGACGATCACGCTGGAAGTGGAGAGCTCG 136 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 || || ||| | || || ||||| || || || || | || ||| || Sbjct 137 -GACACGATCGATAATGTGAAGGCTAAGATACAGGACAAGGAGGGAATCCCACCGGACCA 195 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||| || |||| ||| || |||||||| || || | | || ||||||||||||| Sbjct 196 GCAGAGGCTGATTTTTGCCGGCAAACAGCTAGAAGATGGTAGGACTTTGGCGGACTACAA 255 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGGAA 107784 ||||||||||||||| || ||||| ||||| | || |||| || |||| Sbjct 256 CATTCAAAAGGAGTCGACTTTGCATCTGGTGCTTAGGCTGCGTGGTGGAA 305 >seq70367 Length=2979 Score = 107 bits (118), Expect = 2e-18 Identities = 155/216 (72%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||| || |||||||| || | ||||| || ||||| ||| | || ||| ||| Sbjct 58 ATGCAGATCTTTGTCAAGACCCTTACAGGGAAGACCATCACCCTTGAGGTCGAGAGCTC- 116 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||| ||| | | | | || || ||||| || || |||||| | || |||||| Sbjct 117 CGACACTATTGACAACGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCACCGGATCA 176 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||| ||||| | ||| || || ||||| ||||| | | || ||||||||||||| Sbjct 177 GCAGAGGCTTATCTTTGCCGGAAAGCAGCTTGAGGATGGCCGCACCTTGGCGGACTACAA 236 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAG 107770 |||||| || ||||| || |||||| |||| |||| Sbjct 237 CATTCAGAAAGAGTCGACCTTGCACTTGGTCCTGAG 272 >seq99159 Length=5808 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGG 107614 |||||| || |||||||| || | || ||||||||||| ||| | || ||| | Sbjct 1806 AATGCAGATCTTTGTCAAGACCCTCACGGGCAAAACCATAACCCTGGAGGTTGAGAGTTC 1747 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 || || | | | || ||| |||||| || || ||||| | ||| ||| || Sbjct 1746 GGACACAATTGATAATGTGAAAGCTAAGATTCAAGACAAGGAAGGGATACCCCCGGACCA 1687 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||| | |||| ||| || || ||||| ||||| | || | ||||||||||| Sbjct 1686 GCAGAGGTTGATTTTTGCTGGCAAGCAGCTCGAGGATGGACGCACTCTAGCGGACTACAA 1627 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 ||||| |||||||| || | || |||||||| | |||||||| || Sbjct 1626 TATTCAGAAGGAGTCGACTCTTCATCTGGTGTTGCGGTTGCGAGGAGG 1579 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 |||||||| ||||| || || ||||| ||||| || || || ||||| |||| | | Sbjct 2261 ATGCAAATCTTTGTTAAGACCTTAACGGGCAAGACAATCACGCTCGAAGTGGAGAGTTCC 2202 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || ||| | | || || |||||| || || || ||| | ||| || ||| Sbjct 2201 GACACCATCGACAATGTTAAGGCCAAGATTCAGGACAAGGAGGGCATTCCCCCAGACCAG 2142 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 |||||| | || | ||| || || ||||| || || | | || | || || |||||| Sbjct 2141 CAGAGATTGATCTTTGCTGGAAAGCAGCTCGAAGATGGCCGCACTCTTGCTGATTACAAC 2082 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGT 107764 ||||| || |||||||| | ||| |||| Sbjct 2081 ATTCAGAAAGAGTCTACTCTCCACCTGGT 2053 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || || || || || |||| || || || |||||| | ||| ||| | | Sbjct 2489 ATGCAGATCTTCGTTAAGACCCTAACTGGGAAGACAATTACCCTTGAAGTTGAGAGTTCC 2430 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || ||| | | ||||| ||||| || || || ||| | ||| |||||| Sbjct 2429 GACACCATCGACAACGTAAAGGCTAAGATCCAAGACAAGGAGGGCATTCCCCCAGATCAG 2370 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 || || | || | ||||| || ||||| ||||||| | || | |||||||||||| Sbjct 2369 CAAAGGTTGATCTTCGCGGGAAAGCAGCTTGAGGACGGCCGCACTCTTGCGGACTACAAC 2310 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGT 107764 || || ||||||||||| | ||| |||| Sbjct 2309 ATCCAGAAGGAGTCTACTCTCCACTTGGT 2281 >seq111813 Length=4153 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTG 107613 |||||| ||||| |||| ||||| || || || ||||| || | || |||| ||| Sbjct 1328 AATGCAGATTTTCATCAAGACTTTGACTGGAAAGACCATCACTTTGGAGGTGGAGAGCTC 1269 Query 107614 GCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATC 107673 ||| || | | | | || ||| |||||| || || |||||| | || ||| | Sbjct 1268 -CGACACAATTGACAATGTGAAAGCCAAGATTCAGGACAAGGAAGGCATTCCTCCGGACC 1210 Query 107674 AGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACA 107733 ||||| | || || | ||||||||| ||||| || || | | || | || ||||||| Sbjct 1209 AGCAGCGGCTGATATTTGCGGGTAAGCAGCTCGAAGATGGCTGGACGCTAGCCGACTACA 1150 Query 107734 ACATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 |||| || |||||||| || | || ||||| || | ||| |||| || Sbjct 1149 ACATCCAGAAGGAGTCGACCCTTCATCTGGTGCTGCGTTTGAGAGGAGG 1101 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398283754087177