Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ocimum_20tenuiflorum_20[genbank_20GCA_5F001278415.1_202015-09-02] 121,993 sequences; 332,616,730 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq99159 145 6e-30 seq117762 132 4e-26 seq70367 118 8e-22 seq111813 116 3e-21 seq109031 113 3e-20 seq95628 111 1e-19 seq69221 91.5 1e-13 seq103400 89.7 4e-13 seq9178 84.2 2e-11 seq66988 82.4 6e-11 >seq99159 Length=5808 Score = 145 bits (160), Expect = 6e-30 Identities = 169/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618 ||| ||||| | | |||||||| || || ||| ||| ||||| ||||| || || || Sbjct 1806 TCCACCCCTTAGCCTGAGCACCAAGTGGAGAGTGCTTTCCTTTTGGATGTTGTAGTCGGC 1865 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 || || || ||||||||| || |||||||| | ||||| || |||||||| || || Sbjct 1866 AAGTGTTCGTCCATCATCGAGCTGCTTGCCAGCGAAAATCAACCTCTGCTGATCTGGAGG 1925 Query 29679 AATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 ||| ||||| || ||||| | || |||||| | |||| || || || || || Sbjct 1926 AATGCCCTCCTTATCTTGGATCTTGGCCTTGACATTGTCTATGGTATCGGAGCTCTCAAC 1985 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 |||||||| || || || |||||||||||||||||||| || ||||| Sbjct 1986 CTCAAGAGTAATGGTCTTTCCAGTTAAGGTTTTAACAAAGATTTGCAT 2033 Score = 140 bits (154), Expect = 2e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || || | ||| || |||||||| || || || || || || ||||| || || ||| Sbjct 2491 CCACCTCTGAGACGAAGGACCAAATGGAGGGTAGACTCCTTCTGTATGTTGTAGTCTGCA 2550 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||||||| ||| |||||||||||||| ||| | ||||| |||||||| ||||| || Sbjct 2551 AGGGTGCGACCATCTTCGAGTTGTTTGCCCGCAAAGATCAACCTTTGCTGGTCCGGAGGG 2610 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || || || ||||| || | ||| || || | || | ||||| || ||| || Sbjct 2611 ATCCCTTCCTTGTCCTGGATTTTAGCCTTTACGTTATCGATTGTGTCTGAGCTTTCCACC 2670 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || || || || ||||| |||| |||||| || || |||||||| Sbjct 2671 TCGAGGGTGATTGTCTTGCCTGTTAGGGTTTTCACGAAGATCTGCAT 2717 Score = 118 bits (130), Expect = 8e-22 Identities = 155/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 || || ||||| || || || || || || || ||||| || ||||||| ||||| Sbjct 2275 CGGAGGACCAAGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCCGCAAGAGTGCGGCCG 2334 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || || || || || || || | ||||| ||||||||||| || ||||| ||||| ||| Sbjct 2335 TCCTCAAGCTGCTTTCCCGCGAAGATCAACCTTTGCTGATCTGGGGGAATGCCCTCCTTG 2394 Query 29692 TCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATA 29751 ||||| | || || || | || | ||||| ||| || |||||||| || || Sbjct 2395 TCTTGGATCTTAGCCTTTACGTTGTCGATGGTGTCGGAACTCTCAACTTCAAGGGTAATT 2454 Query 29752 GTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || ||||||| ||| ||||| || |||||||| Sbjct 2455 GTCTTCCCAGTTAGGGTCTTAACGAAGATCTGCAT 2489 Score = 87.8 bits (96), Expect = 1e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 29584 TGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTGT 29643 || || || || ||||| || ||||| ||||| |||| || | ||| || | || Sbjct 1375 TGCAGGGTCGACTCTTTCTGGATGTTGTAATCTGCAAGAGTCCTTCCATCTTCCAACTGC 1434 Query 29644 TTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTT 29703 || |||||| |||||| || || || ||||| || |||||||| || || |||| || Sbjct 1435 TTACCAGCAAATATCAGCCTCTGTTGGTCCGGTGGGATACCCTCCTTATCCTGTATCTTC 1494 Query 29704 TGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTT 29763 || ||| | || | ||||| ||| || || || | || || || || ||||| Sbjct 1495 GCCTTCACATTGTCGATTGTGTCCGAACTCTCCACCTCCAATGTGATCGTCTTCCCAGTC 1554 Query 29764 AAGGTTTTAACAAATATCTGCAT 29786 | || || |||||||||||||| Sbjct 1555 AGCGTCTTCACAAATATCTGCAT 1577 >seq117762 Length=309 Score = 132 bits (146), Expect = 4e-26 Identities = 159/216 (74%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| || |||||||| || |||||||| || || ||||| ||||| || | |||||| Sbjct 39 ACGGAGGACCAAATGGAGGGTGGATTCCTTCTGGATGTTGTAATCAGCCAAGGTGCGTCC 98 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| ||||| || ||||| ||| | ||||| || ||||| ||||| ||||| ||||| || Sbjct 99 ATCCTCGAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCCGGGGGAATGCCCTCCTT 158 Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 ||| || | || ||||| | || | ||||| || || ||||||||||| || Sbjct 159 GTCCTGGATCTTGGCCTTGACGTTGTCAATCGTGTCCGAGCTCTCGACTTCAAGAGTGAT 218 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || ||||| || | ||| || || || || ||||| Sbjct 219 GGTCTTGCCGGTAAGGGTCTTGACGAAGATTTGCAT 254 >seq70367 Length=2979 Score = 118 bits (130), Expect = 8e-22 Identities = 150/204 (74%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 29584 TGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTGT 29643 ||||| ||||| || || || ||||| ||||| || | ||| || ||| || || || Sbjct 488 TGAAGGGTGGACTCCTTCTGGATGTTGTAATCAGCCAAGGTACGGCCATCTTCCAGCTGC 429 Query 29644 TTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTT 29703 || |||||| | ||||| || ||||||||||| || |||||||| ||||| || ||| || Sbjct 428 TTCCCAGCAAAGATCAACCTCTGCTGATCCGGTGGGATACCCTCCTTGTCCTG-AATCTT 370 Query 29704 TG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGT 29762 | || ||| | || | ||||| || ||| || || || || || ||||| || || Sbjct 369 GGCCTTTACATTGTCAATTGTGTCGGAGCTTTCAACCTCTAGGGTGATGGTTTTCCCGGT 310 Query 29763 TAAGGTTTTAACAAATATCTGCAT 29786 | ||| || ||||| |||||||| Sbjct 309 AAGGGTCTTCACAAAAATCTGCAT 286 Score = 100 bits (110), Expect = 2e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 29574 CAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATC 29633 ||| ||||| || | || || ||||| |||||||| || ||||| | |||||| ||| Sbjct 270 CAGGACCAAGTGCAAGGTCGACTCTTTCTGAATGTTGTAGTCCGCCAAGGTGCGGCCATC 211 Query 29634 ATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTC 29693 || || || || || ||| | || | || ||||||||||| ||||| || || ||||| Sbjct 210 CTCAAGCTGCTTTCCGGCAAAGATAAGCCTCTGCTGATCCGGTGGAATGCCTTCCTTGTC 151 Query 29694 TTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGT 29753 || | || || || | || | |||||| || || || ||||| || || || Sbjct 150 CTGGATCTTGGCCTTCACGTTGTCAATAGTGTCGGAGCTCTCGACCTCAAGGGTGATGGT 91 Query 29754 TTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || || | ||| || ||||| |||||||| Sbjct 90 CTTCCCTGTAAGGGTCTTGACAAAGATCTGCAT 58 >seq111813 Length=4153 Score = 116 bits (128), Expect = 3e-21 Identities = 155/213 (73%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 29575 AGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCA 29634 || || | ||| || |||||||||||||| || || |||||||||| ||| | |||| Sbjct 1779 AGGACAAGATGGAGAGTGGATTCTTTTTGGATATTGTAATCCGCAAGGGTTCTGCCATCA 1838 Query 29635 TCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCT 29694 ||||| || || ||||| | ||||| || ||||| || || ||||| || || |||||| Sbjct 1839 TCGAGCTGCTTTCCAGCGAAGATCAACCTCTGCTGGTCAGGAGGAATTCCTTCCTTGTCT 1898 Query 29695 TGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGT 29753 || ||| || | ||||| | || | ||||| || || || || || || || || Sbjct 1899 TG-AATCTTAGCCTTGACGTTGTCAATGGTGTCGGAGCTCTCAACCTCGAGGGTGATTGT 1957 Query 29754 TTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || ||||| | || |||||||| || ||||| Sbjct 1958 CTTTCCAGTAAGTGTCTTAACAAAGATTTGCAT 1990 Score = 113 bits (124), Expect = 3e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 ||||| |||||||||||||||| |||||| || || || || || ||||| || || || Sbjct 1101 CCTCCTCTCAAACGCAGCACCAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGCT 1160 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | || | ||| ||||| || || || ||| |||||| | ||||| ||||| ||| Sbjct 1161 AGCGTCCAGCCATCTTCGAGCTGCTTACCCGCAAATATCAGCCGCTGCTGGTCCGGAGGA 1220 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 || || || ||||| || ||| || | ||| ||| | || | ||||| || || || Sbjct 1221 ATGCCTTCCTTGTCCTG-AATCTTGGCTTTCACATTGTCAATTGTGTCGGAGCTCTCCAC 1279 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 || | ||| || || || ||||| || || || | || ||||||||| Sbjct 1280 CTCCAAAGTGATGGTCTTTCCAGTCAAAGTCTTGATGAAAATCTGCATT 1328 >seq109031 Length=8095 Score = 113 bits (124), Expect = 3e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 29575 AGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCA 29634 ||||||| ||| | || || || ||||||||||| || ||||| | || | | ||| Sbjct 288 AGCACCAGATGCAAAGTCGACTCCTTTTGAATGTTGTAGTCCGCCAAAGTCCTACCATCT 229 Query 29635 TCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCT 29694 || || |||||||| ||| | |||| || ||||| ||||| || || ||||| ||||| Sbjct 228 TCTAGCTGTTTGCCGGCAAAAATCAGCCTCTGCTGGTCCGGTGGGATTCCCTCCTTGTCC 169 Query 29695 TGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTT 29754 |||| || || ||| | || | ||||| || || ||||| || || || || Sbjct 168 TGTATCTTAGCCTTCACATTATCGATCGTGTCCGAGCTCTCCACTTCCAGCGTGATCGTC 109 Query 29755 TTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||||| || || || || ||||| |||||||| Sbjct 108 TTGCCGGTCAAAGTCTTGACAAAGATCTGCAT 77 Score = 105 bits (116), Expect = 5e-18 Identities = 148/205 (72%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 29584 TGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTGT 29643 || || || || || || ||||| |||||||| |||| ||| | ||| ||||| || Sbjct 507 TGGAGAGTCGACTCCTTCTGAATATTATAATCAGCAAGGGTCCTTCCATCCTCGAGCTGC 448 Query 29644 TTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTT 29703 || |||||| | || || || ||||| ||||||||||| || || |||||||| ||| || Sbjct 447 TTCCCAGCAAAGATTAACCTCTGCTGGTCCGGCGGAATGCCTTCCTTGTCTTG-AATCTT 389 Query 29704 TG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGT 29762 || || ||| | || | ||||| || || || || | ||| || || || || || Sbjct 388 TGCCTTCACATTATCAATGGTGTCCGAGCTCTCCACCTCCAAAGTGATCGTCTTCCCCGT 329 Query 29763 TAAGGTTTTAACAAATATCTGCATT 29787 | || || ||||| ||||||||| Sbjct 328 CAGAGTCTTCACAAAGATCTGCATT 304 >seq95628 Length=1400 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 ||||| || || | ||||||||| || || ||||| || || || ||||| ||||| || Sbjct 233 CCTCCTCTTAACCTCAGCACCAAGTGCAGGGTGGACTCCTTCTGGATGTTGTAATCGGCC 174 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | || ||| ||| ||||| || || || ||| | || || || ||||||||||| ||| Sbjct 173 AACGTACGACCATCCTCGAGCTGCTTCCCGGCAAAGATTAACCTCTGCTGATCCGGGGGA 114 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 || ||||| ||||| || ||| || | || ||| | || | |||||||| ||| || Sbjct 113 ATCCCCTCCTTGTCCTG-AATCTTCGCCTTCACATTGTCGATCGTGTCAGAGCTTTCAAC 55 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || | || || || || || || | || || || || || ||||| Sbjct 54 CTCCAAGGTGATGGTCTTCCCGGTCAGTGTCTTGACGAAGATTTGCAT 7 >seq69221 Length=10640 Score = 91.5 bits (100), Expect = 1e-13 Identities = 112/152 (74%), Gaps = 1/152 (1%) Strand=Plus/Minus Query 29549 TTTATCGTTGT-CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATG 29607 || ||| |||| |||||||| | | || || | ||||| || ||||||||||| ||| Sbjct 6023 TTGATCATTGTTCCTCCCCTAAGCCTCAAAACAAGGTGAAGTGTTGATTCTTTTTGGATG 5964 Query 29608 TTATAATCCGCAATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGC 29667 ||||| || || | || | | ||| || |||||||| |||||| |||| | || ||| Sbjct 5963 TTATAGTCTGCCAAAGTTCTACCATCTTCCAGTTGTTTACCAGCAAATATAAGCCTCTGC 5904 Query 29668 TGATCCGGCGGAATACCCTCTTTGTCTTGTAA 29699 || || || || ||||| ||||| || || || Sbjct 5903 TGGTCAGGGGGGATACCTTCTTTATCCTGCAA 5872 >seq103400 Length=1682 Score = 89.7 bits (98), Expect = 4e-13 Identities = 97/126 (77%), Gaps = 2/126 (2%) Strand=Plus/Plus Query 29665 TGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGT 29723 ||||| ||||||||||| || || ||||| || |||||| | || ||| | || | || Sbjct 16 TGCTGGTCCGGCGGAATTCCTTCCTTGTCCTG-AATTTTCGCCTTCACAATGTCGATTGT 74 Query 29724 GTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTG 29783 ||| ||| || ||||| || || || |||||||| |||| |||||| || || ||||| Sbjct 75 GTCGGAACTCTCGACTTCGAGGGTGATCGTTTTGCCGGTTAGGGTTTTCACGAAGATCTG 134 Query 29784 CATTTT 29789 |||||| Sbjct 135 CATTTT 140 >seq9178 Length=1540 Score = 84.2 bits (92), Expect = 2e-11 Identities = 116/160 (73%), Gaps = 2/160 (1%) Strand=Plus/Minus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| || || | ||| | || || || || || ||||||||||| |||| || || Sbjct 171 ACGAAGGACGAGATGCAAAGTTGACTCCTTCTGGATGTTATAATCAGCAAGTGTACGCCC 112 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| || || || || |||||| | ||||| || ||||| || |||||||| || || || Sbjct 111 ATCTTCCAGCTGCTTACCAGCAAAGATCAACCTCTGCTGGTCAGGCGGAATGCCTTCCTT 52 Query 29691 GTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGA 29729 ||||| ||| |||| || ||| | || || ||||| || Sbjct 51 ATCTTG-AATCTTTGCCTTCACATTATCAACGGTGTCGGA 13 >seq66988 Length=1372 Score = 82.4 bits (90), Expect = 6e-11 Identities = 99/132 (75%), Gaps = 2/132 (2%) Strand=Plus/Plus Query 29656 ATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGT 29714 ||||| | ||||||||||||||||| |||||||| || || ||| |||| ||||| | Sbjct 10 ATCAAACGCTGCTGATCCGGCGGAATCCCCTCTTTATCCTG-AATCTTTGCCTTGACGTT 68 Query 29715 TTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAAC 29774 || | ||||| || || || || ||||| || || || || |||| |||||||| Sbjct 69 ATCGATTGTGTCGGAGCTCTCGACCTCGAGAGTGATTGTCTTCCCCGTTAGTGTTTTAAC 128 Query 29775 AAATATCTGCAT 29786 || |||||||| Sbjct 129 GAAGATCTGCAT 140 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 384646460066013