Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ocimum_20tenuiflorum_20[genbank_20GCA_5F001278415.1_202015-09-02] 121,993 sequences; 332,616,730 total letters Query= NC_023584.1 Length=170438 Score E Sequences producing significant alignments: (Bits) Value seq115592 143 3e-29 seq99465 129 6e-25 seq85463 120 3e-22 seq31467 107 2e-18 seq110764 105 7e-18 seq110392 84.2 2e-11 >seq115592 Length=218 Score = 143 bits (158), Expect = 3e-29 Identities = 162/217 (75%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 159331 GAGTTGCTGGTATCCTAGGTGGAGCACTTCTATCTGCTATTCATGGGGTCACAGTTGAAA 159390 ||||||||||| | | || | || | |||| ||||||||||| | || || |||| Sbjct 218 GAGTTGCTGGTGTATTGGGGGCTGCTTTGCTATGCGCTATTCATGGTGCTACCGTAGAAA 159 Query 159391 ATACATTATACGAGGATGGAGAACAAGCAAACACCTTTAAGGCGTTTGATTCAACTCAAG 159450 |||| |||| || ||||| || ||||| || || || ||| | ||||||||| Sbjct 158 ATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCTTTTAACCCAACTCAAG 99 Query 159451 AGGAGGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGCATTG 159510 || || |||||||| ||||||||||| |||||||| ||||| || ||||| || ||| Sbjct 98 CCGAAGAAACTTATTCCATGGTCACTGCTAACCGCTTTTGGTCCCAAATCTTTGGGGTTG 39 Query 159511 CGTTTTCTAACAAGCGGTGGCTTCATTTCTTTATGTT 159547 | ||||| || || || ||| | |||||||||||||| Sbjct 38 CTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTT 2 >seq99465 Length=4513 Score = 129 bits (142), Expect = 6e-25 Identities = 205/290 (71%), Gaps = 8/290 (3%) Strand=Plus/Plus Query 157492 GGTCAAGGTTCTTTCTCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTATATG 157551 |||||||| ||| || |||| |||||||| || || ||| ||||||| |||| ||| Sbjct 2967 GGTCAAGGAAGTTTTTCTGATGGTATGCCTCCAGGAATTTCTTGTACTTTCAACTTCATG 3026 Query 157552 CTCGTCTTCCAGGCAGAGCACAATATTCTTATGCATCCGTTCCACATGCTCGGCGTTGCT 157611 | || ||| |||| ||||| |||||||||||||| | || ||| ||||| || Sbjct 3027 ATTGTATTCTAGGCTGAGCATAATATTCTTATGCA-----TTCATATGTGAGGCGTAGCG 3081 Query 157612 GGGGTATTCGGTGGATCTTTGTTCTCTGCTATGCACGGAAGTCTCGTTACTTCCTCGCTT 157671 || ||||||| || || | ||| ||||||||| || | || |||| || | || Sbjct 3082 GGTGTATTCGACGGCTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACTT-CTAGTTT 3140 Query 157672 GTTC-GTGAAACAACTGAAACAGAGTCACAGAACTATGGTTACAAGTTCGGTCAAGAAGA 157730 | || | |||| || |||| || | || | |||||||| |||||||| | | | Sbjct 3141 GATCAGGTAAACCACAGAAAATGAAACTGCTAATGAAGGTTACAAATTCGGTCAGGGA-A 3199 Query 157731 AGAGACGTACAACATCGTTGCTGCACACGGTTACTTCGGTCGCCTGATCT 157780 ||| | || || ||||| |||||| | |||||||| || || |||||| Sbjct 3200 AGAAGCTTATAATATCGTAGCTGCATATGGTTACTTTGGCCGATTGATCT 3249 >seq85463 Length=6098 Score = 120 bits (132), Expect = 3e-22 Identities = 173/244 (71%), Gaps = 9/244 (4%) Strand=Plus/Plus Query 157756 CACGGTTACTTCGGTCGCCTGATCTTCCAATACGCTTCATTCAACAACAGCAGAAGTCTT 157815 || |||||||| || || ||||||||||||| ||| ||| ||||| | | Sbjct 4020 CATGGTTACTTTGGCCGATTGATCTTCCAATATGCTAGTTTCCACAACTCTCGTTCGTTA 4079 Query 157816 CACTTCTTCCTCGCCGCATGGCCTGTTGTCGGCATCTGGTTCACTGCACTGGGCGTAAGC 157875 |||||| |||| || || |||||||| || || || |||||||||| || || | ||| Sbjct 4080 CACTTCGTCCTAGCTGCTTGGCCTGTAGTGGGTATTTGGTTCACTG--CTAGGTATCAGC 4137 Query 157876 ACCATGGCATTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGT 157935 |||||| ||||| || || |||||||| || ||| | ||| | ||||| |||| || Sbjct 4138 GTCATGGCCTTCAATCTAAATGGTTTCAATTTTAACAAATCCGTAGTTGATAGTCAAAGT 4197 Query 157936 CGTGTGTTGAACACCTGGGCAGATGTCCTGAACCGCGCTGGTCTTGGTATGGAAGTTATG 157995 | || | |||| ||| || | ||||| ||| |||||||| ||||||||| Sbjct 4198 C-------AAAGTCGTGGGTTGATATCATCAACCGTGCTAACCTTGGTATAGAAGTTATG 4250 Query 157996 CATG 157999 |||| Sbjct 4251 CATG 4254 >seq31467 Length=18065 Score = 107 bits (118), Expect = 2e-18 Identities = 147/203 (72%), Gaps = 2/203 (1%) Strand=Plus/Minus Query 157602 CGGCGTTGCTGGGGTATTCGGTGGATCTTTGTTCTCTGCTATGCACGGAAGTCTCGTTAC 157661 |||||| ||||| |||||||| || || | ||| ||||||||| || | || || Sbjct 5479 CGGCGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAAC 5420 Query 157662 TTCCTCGCTTGTTCGTG-AAACAACTGAAACAGAGTCACAGAACTATGGTTACAAGTTCG 157720 ||| | | ||| ||| | |||| || |||| || || || | ||||||| | || Sbjct 5419 TTC-TAGTTTGATCGGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATCCG 5361 Query 157721 GTCAAGAAGAAGAGACGTACAACATCGTTGCTGCACACGGTTACTTCGGTCGCCTGATCT 157780 ||||||| ||||| || || || ||||| || || || |||||||| | || |||||| Sbjct 5360 GTCAAGAGGAAGAAACTTATAATATCGTAGCCGCTCATGGTTACTTTAGACGATTGATCT 5301 Query 157781 TCCAATACGCTTCATTCAACAAC 157803 ||||||| ||| ||||||||| Sbjct 5300 TCCAATATGCTAGTTTCAACAAC 5278 >seq110764 Length=2751 Score = 105 bits (116), Expect = 7e-18 Identities = 82/98 (84%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 157816 CACTTCTTCCTCGCCGCATGGCCTGTTGTCGGCATCTGGTTCACTGCACTGGGCGTAAGC 157875 ||||||||||| || || |||||||| || || |||||||||||||| | || | | | Sbjct 1549 CACTTCTTCCTAGCTGCTTGGCCTGTAGTGGGTATCTGGTTCACTGCTTTAGGTATCAAC 1608 Query 157876 ACCATGGCATTCAACCTCAACGGTTTCAACTTCAACCA 157913 |||||||| |||||||| ||||||||||| |||||||| Sbjct 1609 ACCATGGCTTTCAACCTAAACGGTTTCAATTTCAACCA 1646 >seq110392 Length=2942 Score = 84.2 bits (92), Expect = 2e-11 Identities = 172/248 (69%), Gaps = 7/248 (3%) Strand=Plus/Minus Query 158775 TTTGACATACTCGACGACTGGCTTAAACGGGATCGTTTCGTTTTTGTTGGCTGGTCTGGA 158834 ||||| || | || |||||| | | ||| | |||||||||||| | |||| |||| Sbjct 548 TTTGATATTATGGATGACTGGTTACGAAGGGGCCATTTCGTTTTTGTAGCCTGGCCTGGC 489 Query 158835 CTTCTTCT-TCTACCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGCACGACTTT 158893 || | || ||| || ||| ||| ||| | | || |||||| | || | || || || Sbjct 488 CTATTGCTCTCT-CCTTGTGCCTATTTTG-TGTAGGGGGTTGGTTCACAAGTACAACCTT 431 Query 158894 CGCTACGAGCTGGTATACACATGGACTCGCTACTTCCTATCTTG-AGGGTGCAAACTTTC 158952 | || |||||||| |||||| | || | ||||||| | | ||| || || |||| Sbjct 430 TGTAACTTCATGGTATACCCATGGATTGGCGAGTTCCTATTTGGAAGGCTGTAA--TTTC 373 Query 158953 TT-ACAGCAGCAGTTTCGACTCCAGCTGATGCTATGGGTCATTCTCTTCTGCTTCTCTGG 159011 || ||| | |||||||| ||||| ||| || | | | |||||| | || | || ||| Sbjct 372 TTAACAACCGCAGTTTCTACTCCTGCTAATAGTTTAGTGCATTCTTTATTGTTACTGTGG 313 Query 159012 GGTCCTGA 159019 ||||||| Sbjct 312 AGTCCTGA 305 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 544442105471440