Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ocimum_20tenuiflorum_20[genbank_20GCA_5F001278415.1_202015-09-02] 121,993 sequences; 332,616,730 total letters Query= NC_023587.1 Length=189311 Score E Sequences producing significant alignments: (Bits) Value seq31467 147 3e-30 seq115592 141 1e-28 seq99465 134 2e-26 seq85463 118 1e-21 seq71831 114 2e-20 seq110764 95.1 1e-14 >seq31467 Length=18065 Score = 147 bits (162), Expect = 3e-30 Identities = 173/234 (74%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 178109 CGGTGTTGCTGGGGTATTCGGTGGATCTCTTTTCTCTGCTATGCATGGAAGTCTCGTTAC 178168 ||| || ||||| |||||||| || || || ||| |||||||||||| | || || Sbjct 5479 CGGCGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAAC 5420 Query 178169 TTCTTCGCTCGTCCGTGAGACGACAGAAACTGAGTCCCAGAACTATGGTTACAAGTTCGG 178228 |||| | || | || || ||||||| ||| || || | ||||||| | ||| Sbjct 5419 TTCTAGTTTGATCGGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATCCGG 5360 Query 178229 ACAAGAAGAAGAAACATATAACATCGTCGCAGCCCATGGTTACTTCGGTCGTTTGATCTT 178288 ||||| |||||||| ||||| ||||| || || ||||||||||| | || |||||||| Sbjct 5359 TCAAGAGGAAGAAACTTATAATATCGTAGCCGCTCATGGTTACTTTAGACGATTGATCTT 5300 Query 178289 CCAATATGCATCGTTCAACAACTCCCGTTCACTGCACTTCTTCCTCGCAGCATG 178342 ||||||||| ||||||||||| ||||| | |||||||| || || || || Sbjct 5299 CCAATATGCTAGTTTCAACAACTCTCGTTCGTTACACTTCTTTCTAGCTGCTTG 5246 >seq115592 Length=218 Score = 141 bits (156), Expect = 1e-28 Identities = 159/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 179495 GAGTTGCAGGTATCCTGGGTGGTGCTCTGCTCTCTGCTATTCATGGAGTAACTGTAGAGA 179554 ||||||| ||| | |||| | |||| |||| | ||||||||||| | || ||||| | Sbjct 218 GAGTTGCTGGTGTATTGGGGGCTGCTTTGCTATGCGCTATTCATGGTGCTACCGTAGAAA 159 Query 179555 ATACATTGTATGAAGATGGAGAACAAGCAAACACATTTAAAGCGTTCGACTCTACGCAAG 179614 |||| || | ||||||||| || ||||| ||||| || || || | || |||| Sbjct 158 ATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCTTTTAACCCAACTCAAG 99 Query 179615 AGGAGGAGACCTATTCTATGGTTACAGCGAACCGTTTTTGGTCGCAGATCTTCGGGGTTC 179674 || || || ||||| ||||| || || ||||| |||||||| || ||||| |||||| Sbjct 98 CCGAAGAAACTTATTCCATGGTCACTGCTAACCGCTTTTGGTCCCAAATCTTTGGGGTTG 39 Query 179675 CGTTTAGCAATAAGCGTTGGTTCCACTTCTTTA 179707 | ||| |||||| |||||||| || ||||||| Sbjct 38 CTTTTTCCAATAAACGTTGGTTACATTTCTTTA 6 >seq99465 Length=4513 Score = 134 bits (148), Expect = 2e-26 Identities = 204/289 (71%), Gaps = 6/289 (2%) Strand=Plus/Plus Query 177999 GGTCAAGGTTCATTCTCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATG 178058 |||||||| || || |||| |||||||| || || ||| ||||||| |||| |||| Sbjct 2967 GGTCAAGGAAGTTTTTCTGATGGTATGCCTCCAGGAATTTCTTGTACTTTCAACTTCATG 3026 Query 178059 CTTGTATTCCAAGCAGAACACAATATCCTTATGCACCCGTTCCACATGCTCGGTGTTGCT 178118 |||||||| | || || || ||||| |||||||| | || ||| || || || Sbjct 3027 ATTGTATTCTAGGCTGAGCATAATATTCTTATGCA-----TTCATATGTGAGGCGTAGCG 3081 Query 178119 GGGGTATTCGGTGGATCTCTTTTCTCTGCTATGCATGGAAGTCTCGTTACTTCTTCGCTC 178178 || ||||||| || || || ||| |||||||||||| | || |||||| | Sbjct 3082 GGTGTATTCGACGGCTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACTTCTAGTTTG 3141 Query 178179 GTCCGTGAGACGACAGAAACTGAGTCCCAGAACTATGGTTACAAGTTCGGACAAGAAGAA 178238 || | | || ||||||| ||| | || | |||||||| ||||| || | | || Sbjct 3142 ATCAGGTAAACCACAGAAAATGAAACTGCTAATGAAGGTTACAAATTCGGTCAGGGA-AA 3200 Query 178239 GAAACATATAACATCGTCGCAGCCCATGGTTACTTCGGTCGTTTGATCT 178287 ||| | ||||| ||||| || || |||||||||| || || ||||||| Sbjct 3201 GAAGCTTATAATATCGTAGCTGCATATGGTTACTTTGGCCGATTGATCT 3249 >seq85463 Length=6098 Score = 118 bits (130), Expect = 1e-21 Identities = 124/162 (77%), Gaps = 2/162 (1%) Strand=Plus/Plus Query 178263 CATGGTTACTTCGGTCGTTTGATCTTCCAATATGCATCGTTCAACAACTCCCGTTCACTG 178322 ||||||||||| || || ||||||||||||||||| ||| ||||||| ||||| | Sbjct 4020 CATGGTTACTTTGGCCGATTGATCTTCCAATATGCTAGTTTCCACAACTCTCGTTCGTTA 4079 Query 178323 CACTTCTTCCTCGCAGCATGGCCTGTAGTTGGAATCTGGTTCACCGCACTTGGTGTATCC 178382 |||||| |||| || || ||||||||||| || || |||||||| | || ||| | | Sbjct 4080 CACTTCGTCCTAGCTGCTTGGCCTGTAGTGGGTATTTGGTTCACTG--CTAGGTATCAGC 4137 Query 178383 ACCATGGCATTTAACCTCAATGGATTCAACTTCAACCAGTCC 178424 |||||| || || || ||||| ||||| || ||| | ||| Sbjct 4138 GTCATGGCCTTCAATCTAAATGGTTTCAATTTTAACAAATCC 4179 >seq71831 Length=3823 Score = 114 bits (126), Expect = 2e-20 Identities = 199/288 (69%), Gaps = 1/288 (0%) Strand=Plus/Minus Query 177999 GGTCAAGGTTCATTCTCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATG 178058 |||||||| || | |||| ||||||||| || || ||| ||||||| |||| |||| Sbjct 956 GGTCAAGGAAGTTTTTTTGATGGTATGCCTCTAGGAATTTCTTGTACTTTCAACTTCATG 897 Query 178059 CTTGTATTCCAAGCAGAACACAATATCCTTATGCACCCGTTCCACATGCTCGGTGTTGCT 178118 ||||||| | || || |||| || |||||| |||| || || ||| | | || ||| Sbjct 896 ATTGTATTTTAGGCTGAGCACAC-ATTCTTATGTACCCATTTCATATGTTAAGCGTAGCT 838 Query 178119 GGGGTATTCGGTGGATCTCTTTTCTCTGCTATGCATGGAAGTCTCGTTACTTCTTCGCTC 178178 | |||| || || || || ||| || ||||||||| | | |||||| | Sbjct 837 AGTGTATACGACGGCTCCCTATTCAGTGTTATGCATGGTTCCTTGGCAACTTCTAGTTTG 778 Query 178179 GTCCGTGAGACGACAGAAACTGAGTCCCAGAACTATGGTTACAAGTTCGGACAAGAAGAA 178238 || | | || ||||||| ||| || || | || |||| || | ||||| || Sbjct 777 ATCAGGTAAACCACAGAAAATGAATCTGCTAATGAAGGATACAGATTTAGTCAAGAGAAA 718 Query 178239 GAAACATATAACATCGTCGCAGCCCATGGTTACTTCGGTCGTTTGATC 178286 ||||| ||||| |||| | || ||||||||||| || || |||||| Sbjct 717 GAAACTTATAATATCGCATCCGCTCATGGTTACTTTGGCCGATTGATC 670 >seq110764 Length=2751 Score = 95.1 bits (104), Expect = 1e-14 Identities = 85/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 178314 CGTTCACTGCACTTCTTCCTCGCAGCATGGCCTGTAGTTGGAATCTGGTTCACCGCACTT 178373 ||||| | ||||||||||| || || ||||||||||| || ||||||||||| || | Sbjct 1540 CGTTCGTTACACTTCTTCCTAGCTGCTTGGCCTGTAGTGGGTATCTGGTTCACTGCTTTA 1599 Query 178374 GGTGTATCCACCATGGCATTTAACCTCAATGGATTCAACTTCAACCA 178420 ||| | ||||||||| || ||||| || || ||||| |||||||| Sbjct 1600 GGTATCAACACCATGGCTTTCAACCTAAACGGTTTCAATTTCAACCA 1646 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 604743610515880