Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ocimum_20tenuiflorum_20[genbank_20GCA_5F001278415.1_202015-09-02] 121,993 sequences; 332,616,730 total letters Query= NC_023681.1 Length=152710 Score E Sequences producing significant alignments: (Bits) Value seq99159 95.1 1e-14 seq55416 89.7 5e-13 seq117762 86.0 6e-12 seq82767 84.2 2e-11 >seq99159 Length=5808 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 || |||| | ||| | || ||||| | ||||| || || ||||||||||| || Sbjct 2491 CCACCTCTGAGACGAAGGACCAAATGGAGGGTAGACTCCTTCTGTATGTTGTAGTCTGCA 2550 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | |||| |||||||||||||| || ||| |||||| | |||||| || ||||| Sbjct 2551 AGGGTGCGACCATCTTCGAGTTGTTTGCCCGCAAAGATCAACCTTTGCTGGTCCGGAGGG 2610 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 || ||||| ||||| ||||| |||| | || | ||||||| | ||| || Sbjct 2611 ATCCCTTCCTTGTCCTGGATTTTAGCCTTTACGTTATCGATTGTGTCTGAGCTTTCCACC 2670 Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 || | || | |||||||| || | ||||| ||||| || ||||| Sbjct 2671 TCGAGGGTGATTGTCTTGCCTGTTAGGGTTTTCACGAAGATCTGCAT 2717 >seq55416 Length=9261 Score = 89.7 bits (98), Expect = 5e-13 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 137200 AAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCT 137259 ||||| | |||| ||| |||||||| || || |||||||| || || || ||| Sbjct 3925 AAAACAAGGTGAAGTGTTGATTCTTTCTGGATATTGTAATCTGCCAAGGTTCTACCATCT 3984 Query 137260 TCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTC 137318 || | ||||||||| ||| | || || | |||||||| |||||||||||||||||||| Sbjct 3985 TCCAATTGTTTACCGGCAAATATTAGCCTCTGCTGATCAGGAGGTATGCCTTCTTTGTC 4043 >seq117762 Length=309 Score = 86.0 bits (94), Expect = 6e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 || || || | ||| | || ||||| | || ||||| || || ||||||||||| | Sbjct 28 CCACCACGGAGACGGAGGACCAAATGGAGGGTGGATTCCTTCTGGATGTTGTAATCAGCC 87 Query 137245 ATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 137303 | |||| || | || ||||| || || || ||| |||||| | ||||| || || || Sbjct 88 AAGGTGCGTCCA-TCCTCGAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCCGGGGG 146 Query 137304 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTAC 137363 ||||| || ||||| || || || | | || | |||||| | | || || Sbjct 147 AATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCAATCGTGTCCGAGCTCTCGAC 206 Query 137364 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 137412 ||||| ||| | ||||||||||| | || || ||||| ||||||||| Sbjct 207 TTCAAGAGTGATGGTCTTGCCGGTAAGGGTCTTGACGAAGATTTGCATA 255 >seq82767 Length=6942 Score = 84.2 bits (92), Expect = 2e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 137200 AAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCT 137259 ||||| | |||| ||| |||||||| || || |||||||| || || || ||| Sbjct 3864 AAAACAAGGTGAAGTGTTGATTCTTTCTGGATATTGTAATCTGCCAAGGTTCTACCATCT 3923 Query 137260 TCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTC 137318 || | |||||||||||| | || || | ||||| || |||||||||||||||||||| Sbjct 3924 TCCAACTGTTTACCAGCAAATATTAGCCTCTGCTGGTCAGGAGGTATGCCTTCTTTGTC 3982 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 487799013147600