Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ocimum_20tenuiflorum_20[genbank_20GCA_5F001278415.1_202015-09-02] 121,993 sequences; 332,616,730 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq109834 129 6e-25 seq117762 127 2e-24 seq111813 125 7e-24 seq99159 114 1e-20 seq95628 109 5e-19 seq70367 109 5e-19 seq4809 102 8e-17 seq109031 98.7 1e-15 seq66988 95.1 1e-14 seq103400 84.2 2e-11 >seq109834 Length=6695 Score = 129 bits (142), Expect = 6e-25 Identities = 122/156 (78%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 133505 GTCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTT 133564 |||||||||||||||||| ||| | || |||| ||||||||| ||||| || || ||||| Sbjct 4 GTCCTCGAGCTGCTTGCCGGCGAAGATCAGCCTCTGCTGGTCCGGAGGAATTCCCTCCTT 63 Query 133565 GTCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGAC 133624 ||| |||||| ||||| | || | ||||| | | |||||| |||| ||||| Sbjct 64 GTCCTGGATCTTAGCCTTGACGTTATCTATGGTGTCCGAGCTCTCCACCTCGAGGGTGAT 123 Query 133625 GGTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 ||| |||||||| || ||||| ||||| |||||||| Sbjct 124 GGTCTTGCCGGTGAGGGTTTTCACGAAGATCTGCAT 159 >seq117762 Length=309 Score = 127 bits (140), Expect = 2e-24 Identities = 154/207 (74%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 ||||| | |||||| || ||||| || |||||||| ||| ||| | | | |||||||| Sbjct 49 AAATGGAGGGTGGATTCCTTCTGGATGTTGTAATCAGCCAAGGTGCGTCCA-TCCTCGAG 107 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 ||||||||| || | || | || ||||||||| || || ||||| |||||||| ||| Sbjct 108 CTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGAT 167 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||| ||||| | |||| |||||| | | ||| || || | |||| ||| ||||| Sbjct 168 CTTGGCCTTGACGTTGTCAATCGTGTCCGAGCTCTCGACTTCAAGAGTGATGGTCTTGCC 227 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660 ||| || || || ||||| || ||||| Sbjct 228 GGTAAGGGTCTTGACGAAGATTTGCAT 254 >seq111813 Length=4153 Score = 125 bits (138), Expect = 7e-24 Identities = 150/204 (74%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTG 133516 ||| | ||| ||||| ||||| || ||||| ||| | | ||| | || |||||||| Sbjct 1124 ATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGCTAGCGTCCAGCCATCTTCGAGCTG 1183 Query 133517 CTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTT 133576 ||| ||||| | || |||||||||||||| ||||| |||||||||||||| ||||| Sbjct 1184 CTTACCCGCAAATATCAGCCGCTGCTGGTCCGGAGGAATGCCTTCCTTGTCCTGAATCTT 1243 Query 133577 TTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGT 133636 || | | |||| ||||||| | |||||| || | |||| ||| || || || Sbjct 1244 GGCTTTCACATTGTCAATTGTGTCGGAGCTCTCCACCTCCAAAGTGATGGTCTTTCCAGT 1303 Query 133637 CAGAGTTTTTACGAAAATCTGCAT 133660 || ||| || | |||||||||||| Sbjct 1304 CAAAGTCTTGATGAAAATCTGCAT 1327 Score = 98.7 bits (108), Expect = 1e-15 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 ||||| ||||| || ||||||||||| | | || || ||||||||||| || Sbjct 1794 GTGGATTCTTTTTGGATATTGTAATCCGCAAGGGTTCTGCCATCATCGAGCTGCTTTCCA 1853 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 ||| | || | || ||||||||| ||||| || ||||||||||| ||||| |||| Sbjct 1854 GCGAAGATCAACCTCTGCTGGTCAGGAGGAATTCCTTCCTTGTCTTGAATCTTAGCCTTG 1913 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643 | | |||| ||||||| | ||| || |||| ||||| || || || || || || Sbjct 1914 ACGTTGTCAATGGTGTCGGAGCTCTCAACCTCGAGGGTGATTGTCTTTCCAGTAAGTGTC 1973 Query 133644 TTTACGAAAATCTGCAT 133660 || || || || ||||| Sbjct 1974 TTAACAAAGATTTGCAT 1990 >seq99159 Length=5808 Score = 114 bits (126), Expect = 1e-20 Identities = 151/207 (73%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 ||||| | ||| ||||| |||||||| ||||| || | | ||| ||| | || ||||| Sbjct 2512 AAATGGAGGGTAGACTCCTTCTGTATGTTGTAGTCTGCAAGGGTGCGACCA-TCTTCGAG 2570 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 || |||||||| | || | || |||||||| |||||||| ||||||||||| ||| Sbjct 2571 TTGTTTGCCCGCAAAGATCAACCTTTGCTGGTCCGGAGGGATCCCTTCCTTGTCCTGGAT 2630 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 || ||| | | || | ||||| | | ||||| |||| ||||| || ||||| Sbjct 2631 TTTAGCCTTTACGTTATCGATTGTGTCTGAGCTTTCCACCTCGAGGGTGATTGTCTTGCC 2690 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660 || || ||||| ||||| |||||||| Sbjct 2691 TGTTAGGGTTTTCACGAAGATCTGCAT 2717 Score = 98.7 bits (108), Expect = 1e-15 Identities = 142/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || ||||| ||||| |||||||| || | | ||| | | | ||||||||||||||||| Sbjct 1609 GTCGACTCCTTCTGAATATTGTAGTCCGCTAGAGTGCGTCCA-TCCTCGAGCTGCTTGCC 1667 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || |||| | || ||||||||| || || || ||||||||||| ||||| || Sbjct 1668 AGCAAAAATCAACCTCTGCTGGTCCGGGGGTATCCCTTCCTTGTCTTGAATCTTAGCTTT 1727 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | |||| ||||| | ||| || || | ||| | ||||||||| || || || Sbjct 1728 CACATTATCAATTGTGTCCGAACTCTCAACCTCCAGGGTTATGGTTTTGCCCGTGAGGGT 1787 Query 133643 TTTTACGAAAATCTGCAT 133660 || || || |||||||| Sbjct 1788 CTTGACAAAGATCTGCAT 1805 Score = 82.4 bits (90), Expect = 7e-11 Identities = 139/199 (70%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || ||||||||||| || |||||||| | | ||| | | | || ||||||||||| || Sbjct 2065 GTAGACTCTTTCTGAATGTTGTAATCAGCAAGAGTGCGGCCA-TCTTCGAGCTGCTTTCC 2123 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | || | | ||||||||| || || ||||| |||||||| ||||| ||| Sbjct 2124 AGCAAAGATCAATCTCTGCTGGTCTGGGGGAATGCCCTCCTTGTCCTGAATCTTGGCCTT 2183 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | || | ||||||| |||||| |||| |||| || ||||| || | || Sbjct 2184 AACATTGTCGATGGTGTCGGAACTCTCCACTTCGAGCGTGATTGTCTTGCCCGTTAAGGT 2243 Query 133643 TTTTACGAAAATCTGCATG 133661 || || || || |||||| Sbjct 2244 CTTAACAAAGATTTGCATG 2262 >seq95628 Length=1400 Score = 109 bits (120), Expect = 5e-19 Identities = 150/207 (72%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 || || | ||||||||| ||||| || ||||||||| ||| ||| ||| | |||||||| Sbjct 212 AAGTGCAGGGTGGACTCCTTCTGGATGTTGTAATCGGCCAACGTACGACCA-TCCTCGAG 154 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 |||||| || || | || | || |||||| || || || || || |||||||| || Sbjct 153 CTGCTTCCCGGCAAAGATTAACCTCTGCTGATCCGGGGGAATCCCCTCCTTGTCCTGAAT 94 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||| ||| | | || | |||||| | | || || || | ||||| ||| || || Sbjct 93 CTTCGCCTTCACATTGTCGATCGTGTCAGAGCTTTCAACCTCCAAGGTGATGGTCTTCCC 34 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660 |||||| || || ||||| || ||||| Sbjct 33 GGTCAGTGTCTTGACGAAGATTTGCAT 7 Score = 98.7 bits (108), Expect = 1e-15 Identities = 143/202 (71%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522 ||||||||||||||| || ||||| || | | || ||||| | |||||| || Sbjct 432 GGTGGACTCTTTCTGGATGTTGTAGTCAGCAAGGGTCCTTCCATCCTCCAACTGCTTCCC 373 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | || | || ||||||||| || ||||| || |||||||| ||||| ||| Sbjct 372 AGCAAAGATCAACCTCTGCTGGTCCGGTGGGATACCCTCCTTGTCCTGAATCTTAGCCTT 313 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | |||| || || | | |||||| || | ||||| ||| || || ||||| || Sbjct 312 GACATTGTCAATGGTATCCGAGCTCTCCACCTCCAAGGTGATGGTCTTCCCTGTCAGTGT 253 Query 133643 TTTTACGAAAATCTGCATGGCT 133664 || || |||||||||||| || Sbjct 252 CTTGACAAAAATCTGCATGCCT 231 >seq70367 Length=2979 Score = 109 bits (120), Expect = 5e-19 Identities = 150/207 (72%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 || || | ||| ||||||||||| || ||||| || ||| ||| | | | ||||| || Sbjct 263 AAGTGCAAGGTCGACTCTTTCTGAATGTTGTAGTCCGCCAAGGTGCGGCCA-TCCTCAAG 205 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 |||||| || || | || |||| |||||| || || || |||||||||||||| ||| Sbjct 204 CTGCTTTCCGGCAAAGATAAGCCTCTGCTGATCCGGTGGAATGCCTTCCTTGTCCTGGAT 145 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||| ||| | | |||| ||||||| | ||| || || | ||||| ||| || || Sbjct 144 CTTGGCCTTCACGTTGTCAATAGTGTCGGAGCTCTCGACCTCAAGGGTGATGGTCTTCCC 85 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660 || || || || || || |||||||| Sbjct 84 TGTAAGGGTCTTGACAAAGATCTGCAT 58 Score = 100 bits (110), Expect = 3e-16 Identities = 143/199 (72%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||||||||| ||||| || |||||||| ||| || | | | || || |||||||| | Sbjct 483 GGTGGACTCCTTCTGGATGTTGTAATCAGCCAAGGTACGGCCA-TCTTCCAGCTGCTTCC 425 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | || | || |||||| || || ||||| || |||||||| ||||| || Sbjct 424 CAGCAAAGATCAACCTCTGCTGATCCGGTGGGATACCCTCCTTGTCCTGAATCTTGGCCT 365 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | |||| ||||||| | || || || | ||||| |||||| ||||| || | Sbjct 364 TTACATTGTCAATTGTGTCGGAGCTTTCAACCTCTAGGGTGATGGTTTTCCCGGTAAGGG 305 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || || ||||||||||| Sbjct 304 TCTTCACAAAAATCTGCAT 286 >seq4809 Length=1103 Score = 102 bits (112), Expect = 8e-17 Identities = 116/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 133505 GTCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTT 133564 |||||| |||||||| || ||| | || | || ||||||||| || || || |||||||| Sbjct 11 GTCCTCAAGCTGCTTTCCGGCGAAGATCAACCTCTGCTGGTCTGGGGGAATTCCTTCCTT 70 Query 133565 GTCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGAC 133624 ||| |||||| ||||| | || | ||||||| | ||| || || | ||||| Sbjct 71 GTCTTGGATCTTAGCCTTGACGTTGTCGATGGTGTCGGAGCTCTCGACCTCAAGGGTGAT 130 Query 133625 GGTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 ||| || ||||| || ||||| || || |||||||| Sbjct 131 GGTCTTACCGGTGAGGGTTTTCACAAAGATCTGCAT 166 >seq109031 Length=8095 Score = 98.7 bits (108), Expect = 1e-15 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 || ||||| ||||| ||||| ||||| | | || |||||||||||||| || Sbjct 501 GTCGACTCCTTCTGAATATTATAATCAGCAAGGGTCCTTCCATCCTCGAGCTGCTTCCCA 442 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 || | || | || ||||||||| || || |||||||||||||| |||||| ||| Sbjct 441 GCAAAGATTAACCTCTGCTGGTCCGGCGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTC 382 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643 | | |||| ||||| | | |||||| || | |||| || || || |||||||| Sbjct 381 ACATTATCAATGGTGTCCGAGCTCTCCACCTCCAAAGTGATCGTCTTCCCCGTCAGAGTC 322 Query 133644 TTTACGAAAATCTGCAT 133660 || || || |||||||| Sbjct 321 TTCACAAAGATCTGCAT 305 >seq66988 Length=1372 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 || || || ||||| ||||||||||| | | || ||| ||||||||||| || Sbjct 172 GTCGATTCCTTCTGAATATTGTAATCCGCAAGGGTTCGTCCGTCTTCGAGCTGCTTTCCG 231 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 ||| | || || |||||||| ||||| || || |||||||| || |||||| |||| Sbjct 232 GCGAAGATCAGGCGCTGCTGATCGGGCGGAATTCCTTCCTTATCTTGGATCTTCGCCTTG 291 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643 | | || | || || | ||| || |||| |||| || || ||||| || ||| Sbjct 292 ACGTTGTCGATGGTATCAGAACTCTCGACCTCGAGAGTGATCGTCTTTCCGGTTAGGGTT 351 Query 133644 TTTACGAAAATCTGCAT 133660 || ||||| |||||||| Sbjct 352 TTCACGAAGATCTGCAT 368 >seq103400 Length=1682 Score = 84.2 bits (92), Expect = 2e-11 Identities = 103/138 (75%), Gaps = 2/138 (1%) Strand=Plus/Plus Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGC-TT 133582 ||| | || |||||||||||||| || || || ||||||||||| ||| ||| || || Sbjct 1 GCGAAGATCAGCCGCTGCTGGTCCGGCGGAATTCCTTCCTTGTCC-TGAATTTTCGCCTT 59 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | || | ||||||| ||| || |||| ||||| ||||||||||| || || Sbjct 60 CACAATGTCGATTGTGTCGGAACTCTCGACTTCGAGGGTGATCGTTTTGCCGGTTAGGGT 119 Query 133643 TTTTACGAAAATCTGCAT 133660 ||| ||||| |||||||| Sbjct 120 TTTCACGAAGATCTGCAT 137 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482683625579320