Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ocimum_20tenuiflorum_20[genbank_20GCA_5F001278415.1_202015-09-02] 121,993 sequences; 332,616,730 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq103549 91.5 3e-13 >seq103549 Length=14649 Score = 91.5 bits (100), Expect = 3e-13 Identities = 153/219 (70%), Gaps = 7/219 (3%) Strand=Plus/Plus Query 110526 TTTCTTC-TAGGAATTAACGATGATTCTATTGAAGGTATTTATGATGCTCTTAAAGAAAC 110584 |||||| || | || || |||||| |||||| || || |||||| | ||||| ||| Sbjct 7668 TTTCTTGATATGCATGAAGGATGATAGTATTGAGGGCATATATGATACACTTAAGGAATG 7727 Query 110585 TGCTCTTATTTCTAAAAACTCTGGAGGAATTGGTATTCACGTTCATGATATTCGCTCAAA 110644 |||| ||||| |||| ||||||| |||||| | ||| ||| ||||||| | | Sbjct 7728 TGCTGTTATTAGTAAATCAGCTGGAGGGATTGGTGTGTCCGTCCATAATATTCGTGCTAC 7787 Query 110645 AGGAGCAAATATC---GCAACAGCGAAGGGTGCTTCAACTGGACTTGTTCCAATGTTAAG 110701 |||| |||| | |||| || || |||| ||| ||||||||||| | | Sbjct 7788 AGGAAGTTATATACGTGGAACA---AATGGATTGTCAAATGGCGTTGTTCCAATGCTTCG 7844 Query 110702 AGTCTTCAACGACACTGCAAAATATGTGAATCAAGGTGG 110740 ||| ||||| |||||||| |||||| | || ||||| Sbjct 7845 AGTTTTCAATGACACTGCTCGATATGTTGACCAGGGTGG 7883 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1184957769684273