Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ocimum_20tenuiflorum_20[genbank_20GCA_5F001278415.1_202015-09-02] 121,993 sequences; 332,616,730 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq99159 96.9 2e-15 >seq99159 Length=5808 Score = 96.9 bits (106), Expect = 2e-15 Identities = 149/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 33541 ACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCC 33600 |||| || ||||| |||||| || ||||||||||| | || ||||| | || || Sbjct 2053 ACCAGGTGGAGAGTAGACTCTTTCTGAATGTTGTAATCAGCAAGAGTGCGGCCATCTTCG 2112 Query 33601 AATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCA 33660 | || ||||| ||||| ||||| | |||||| ||| | || | || || ||||| | Sbjct 2113 AGCTGCTTTCCAGCAAAGATCAATCTCTGCTGGTCTGGGGGAATGCCCTCCTTGTCCTGA 2172 Query 33661 ATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTT 33719 || || | | ||||| ||| | ||||||| ||||| || | |||||| || || Sbjct 2173 ATCTT-GGCCTTAACATTGTCGATGGTGTCGGAACTCTCCACTTCGAGCGTGATTGTCTT 2231 Query 33720 ACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || ||||| || || |||||||| ||||| Sbjct 2232 GCCCGTTAAGGTCTTAACAAAGATTTGCAT 2261 Score = 93.3 bits (102), Expect = 3e-14 Identities = 160/231 (69%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||||||||| | ||| | |||||||| || || ||| || ||||||||||| || | Sbjct 2490 ACCACCTCTGAGACGAAGGACCAAATGGAGGGTAGACTCCTTCTGTATGTTGTAGTCTGC 2549 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || ||||| | || || | |||||| || ||||| ||||| | ||||| || | || Sbjct 2550 AAGGGTGCGACCATCTTCGAGTTGTTTGCCCGCAAAGATCAACCTTTGCTGGTCCGGAGG 2609 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCACGGTGTC---GCTTGATTC 33698 | ||||| ||||| ||||| || | || | ||||| ||| ||| Sbjct 2610 GATCCCTTCCTTGTCCTGGATTTTAGCCTTTACGTTATCGATTGTGTCTGAGCT---TTC 2666 Query 33699 CACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 ||| || | ||||| || || ||||||| ||||| || ||||||||||| Sbjct 2667 CACCTCGAGGGTGATTGTCTTGCCTGTTAGGGTTTTCACGAAGATCTGCAT 2717 Score = 84.2 bits (92), Expect = 1e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 || |||| ||| || ||||||| ||| ||||| ||| || || || ||||| || | Sbjct 1579 CCTCCTCGCAACCGCAACACCAGATGAAGAGTCGACTCCTTCTGAATATTGTAGTCCGCT 1638 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || |||||| | || || | || || || ||||||||||| | |||||| || | || Sbjct 1639 AGAGTGCGTCCATCCTCGAGCTGCTTGCCAGCAAAAATCAACCTCTGCTGGTCCGGGGGT 1698 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||||| ||||| ||| || |||| |||| || | ||||| || || Sbjct 1699 ATCCCTTCCTTGTCTTGAATCTTAGCTTTC-ACATTATCAATTGTGTCCGAACTCTCAAC 1757 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | || || ||||| || || | || || |||||||||||||| Sbjct 1758 CTCCAGGGTTATGGTTTTGCCCGTGAGGGTCTTGACAAAGATCTGCAT 1805 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328215286282560