Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ocimum_20tenuiflorum_20[genbank_20GCA_5F001278415.1_202015-09-02] 121,993 sequences; 332,616,730 total letters Query= NC_025456.1 Length=46547 Score E Sequences producing significant alignments: (Bits) Value seq31467 172 2e-38 seq99465 156 1e-33 seq71831 145 2e-30 seq85463 118 3e-22 seq110764 84.2 6e-12 >seq31467 Length=18065 Score = 172 bits (190), Expect = 2e-38 Identities = 180/234 (77%), Gaps = 2/234 (1%) Strand=Plus/Minus Query 20057 GGTGTGGCTGGTGTATTCGGTGGGTCACTATTCAGTGCGATGCACGGTTCGCTTGTTACG 20116 || || |||||||||||||| || || ||||||||||| ||||| ||||| |||| || Sbjct 5478 GGCGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTC-CTTGGTAAC 5420 Query 20117 TCCTCGCTTGTGCGTG-AGACTACTGAACAGGAAAGTCAGAACTATGGTTACAAGTTTGG 20175 | || | ||| || | | || || ||| | ||| | || | ||||||| | || Sbjct 5419 TTCTAGTTTGATCGGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATCCGG 5360 Query 20176 GCAAGAAGAAGAGACCTATAACATCGTAGCCGCTCATGGTTACTTTGGACGTTTGATCTT 20235 ||||| ||||| || ||||| |||||||||||||||||||||||| |||| |||||||| Sbjct 5359 TCAAGAGGAAGAAACTTATAATATCGTAGCCGCTCATGGTTACTTTAGACGATTGATCTT 5300 Query 20236 CCAATACGCTTCTTTCAACAATAGCCGTTCTCTACACTTCTTCCTTGCTGCCTG 20289 |||||| ||| ||||||||| ||||| |||||||||| || ||||| || Sbjct 5299 CCAATATGCTAGTTTCAACAACTCTCGTTCGTTACACTTCTTTCTAGCTGCTTG 5246 >seq99465 Length=4513 Score = 156 bits (172), Expect = 1e-33 Identities = 223/309 (72%), Gaps = 9/309 (3%) Strand=Plus/Plus Query 19928 TTTCTCG-TCTACCCGTTTGGTCAGGGTAGCTTCTCCGATGCTATGCCTTTGGGTATCTC 19986 ||||| | |||||| ||||||| || || || || |||| ||||||| || || || Sbjct 2948 TTTCTTGATCTACCAAATTGGTCAAGGAAGTTTTTCTGATGGTATGCCTCCAGGAATTTC 3007 Query 19987 GGGTACGTTCAACTACATGTTGGTATTCCAAGCCGAACATAACATTCTCATGCACCCGTT 20046 |||| ||||||| |||| | |||||| | || || ||||| ||||| ||||| | Sbjct 3008 TTGTACTTTCAACTTCATGATTGTATTCTAGGCTGAGCATAATATTCTTATGCA-----T 3062 Query 20047 CCACATGCTTGGTGTGGCTGGTGTATTCGGTGGGTCACTATTCAGTGCGATGCACGGTTC 20106 || ||| || || || |||||||||| || || ||||||||||| ||||| ||||| Sbjct 3063 TCATATGTGAGGCGTAGCGGGTGTATTCGACGGCTCCCTATTCAGTGCTATGCATGGTTC 3122 Query 20107 GCTTGTTACGTCCTCGCTTGTGCGTG-AGACTACTGAACAGGAAAGTCAGAACTATGGTT 20165 |||| || | || | ||| | | | || || ||| | |||| | || | |||| Sbjct 3123 -CTTGGTAACTTCTAGTTTGATCAGGTAAACCACAGAAAATGAAACTGCTAATGAAGGTT 3181 Query 20166 ACAAGTTTGGGCAAGAAGAAGAGACCTATAACATCGTAGCCGCTCATGGTTACTTTGGAC 20225 |||| || || || | | |||| | ||||| |||||||| || ||||||||||||| | Sbjct 3182 ACAAATTCGGTCAGGGA-AAGAAGCTTATAATATCGTAGCTGCATATGGTTACTTTGGCC 3240 Query 20226 GTTTGATCT 20234 | ||||||| Sbjct 3241 GATTGATCT 3249 >seq71831 Length=3823 Score = 145 bits (160), Expect = 2e-30 Identities = 220/308 (71%), Gaps = 4/308 (1%) Strand=Plus/Minus Query 19928 TTTCTCG-TCTACCCGTTTGGTCAGGGTAGCTTCTCCGATGCTATGCCTTTGGGTATCTC 19986 ||||| | | ||||| ||||||| || || || | |||| ||||||| | || || || Sbjct 975 TTTCTTGATTTACCCAATTGGTCAAGGAAGTTTTTTTGATGGTATGCCTCTAGGAATTTC 916 Query 19987 GGGTACGTTCAACTACATGTTGGTATTCCAAGCCGAACATAACATTCTCATGCACCCGTT 20046 |||| ||||||| |||| | ||||| | || || || | |||||| ||| |||| || Sbjct 915 TTGTACTTTCAACTTCATGATTGTATTTTAGGCTGAGCACA-CATTCTTATGTACCCATT 857 Query 20047 CCACATGCTTGGTGTGGCTGGTGTATTCGGTGGGTCACTATTCAGTGCGATGCACGGTTC 20106 || ||| | | || ||| |||||| || || || |||||||||| ||||| ||||| Sbjct 856 TCATATGTTAAGCGTAGCTAGTGTATACGACGGCTCCCTATTCAGTGTTATGCATGGTTC 797 Query 20107 GCTTGTTACGTCCTCGCTTGTGCGTG-AGACTACTGAACAGGAAAGTCAGAACTATGGTT 20165 |||| | | || | ||| | | | || || ||| | ||| | || | || | Sbjct 796 -CTTGGCAACTTCTAGTTTGATCAGGTAAACCACAGAAAATGAATCTGCTAATGAAGGAT 738 Query 20166 ACAAGTTTGGGCAAGAAGAAGAGACCTATAACATCGTAGCCGCTCATGGTTACTTTGGAC 20225 ||| ||| | ||||| |||| || ||||| |||| | ||||||||||||||||||| | Sbjct 737 ACAGATTTAGTCAAGAGAAAGAAACTTATAATATCGCATCCGCTCATGGTTACTTTGGCC 678 Query 20226 GTTTGATC 20233 | |||||| Sbjct 677 GATTGATC 670 >seq85463 Length=6098 Score = 118 bits (130), Expect = 3e-22 Identities = 127/165 (77%), Gaps = 6/165 (4%) Strand=Plus/Plus Query 20209 TCATGGTTACTTTGGACGTTTGATCTTCCAATACGCTTCTTTCAACAATAGCCGTTCTCT 20268 ||||||||||||||| || |||||||||||||| ||| |||| |||| ||||| | Sbjct 4019 TCATGGTTACTTTGGCCGATTGATCTTCCAATATGCTAGTTTCCACAACTCTCGTTCGTT 4078 Query 20269 ACACTTCTTCCTTGCTGCCTGGCCGGTGGTAGGGATTTGGTTCGCTGCCTTGGGCGTTTC 20328 ||||||| |||| ||||| ||||| || || || ||||||||| ||| || | || || Sbjct 4079 ACACTTCGTCCTAGCTGCTTGGCCTGTAGTGGGTATTTGGTTCACTG-CTAG---GTATC 4134 Query 20329 TAC--AATGGCGTTTAATCTGAACGGTTTCAACTTTAACCAGTCC 20371 | ||||| || ||||| || |||||||| |||||| | ||| Sbjct 4135 AGCGTCATGGCCTTCAATCTAAATGGTTTCAATTTTAACAAATCC 4179 >seq110764 Length=2751 Score = 84.2 bits (92), Expect = 6e-12 Identities = 85/109 (78%), Gaps = 4/109 (4%) Strand=Plus/Plus Query 20261 CGTTCTCTACACTTCTTCCTTGCTGCCTGGCCGGTGGTAGGGATTTGGTTCGCTGCCTTG 20320 ||||| ||||||||||||| ||||| ||||| || || || || |||||| |||| || Sbjct 1540 CGTTCGTTACACTTCTTCCTAGCTGCTTGGCCTGTAGTGGGTATCTGGTTCACTGCTTTA 1599 Query 20321 GGCGTTTCTACA--ATGGCGTTTAATCTGAACGGTTTCAACTTTAACCA 20367 | || || ||| ||||| || || || ||||||||||| || ||||| Sbjct 1600 G--GTATCAACACCATGGCTTTCAACCTAAACGGTTTCAATTTCAACCA 1646 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 148613196647394