Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ocimum_20tenuiflorum_20[genbank_20GCA_5F001278415.1_202015-09-02] 121,993 sequences; 332,616,730 total letters Query= NC_025461.1 Length=45871 Score E Sequences producing significant alignments: (Bits) Value seq31467 159 1e-34 seq71831 129 2e-25 seq85463 116 1e-21 >seq31467 Length=18065 Score = 159 bits (176), Expect = 1e-34 Identities = 181/239 (76%), Gaps = 3/239 (1%) Strand=Plus/Minus Query 29181 GCTG-GGCGTTGCTGGAGTGTTCGGTGGCTCGCTATTTAGTGCAATGCACGGTTCGCTTG 29239 |||| ||||| ||||| || ||||| ||||| ||||| ||||| ||||| ||||| | | Sbjct 5483 GCTGCGGCGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTCCTTGG 5424 Query 29240 TCACGTCCTCGCTTGTGCGTG-AGACGACTGAAGACATCTCTCAGAACTATGGTTACAAG 29298 | || || | | ||| || | | || || ||| | ||| || | ||||||| Sbjct 5423 TAACTTC-TAGTTTGATCGGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGA 5365 Query 29299 TTTGGACAAGAAGAAGAGACTTATAACATCGTAGCCGCTCACGGTTACTTTGGACGTTTG 29358 | || ||||| ||||| |||||||| |||||||||||||| ||||||||| |||| ||| Sbjct 5364 TCCGGTCAAGAGGAAGAAACTTATAATATCGTAGCCGCTCATGGTTACTTTAGACGATTG 5305 Query 29359 ATCTTCCAATATGCTTCTTTCAATAATAGCCGTTCTCTACACTTCTTCCTTGCTGCCTG 29417 ||||||||||||||| |||||| || ||||| |||||||||| || ||||| || Sbjct 5304 ATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCGTTACACTTCTTTCTAGCTGCTTG 5246 >seq71831 Length=3823 Score = 129 bits (142), Expect = 2e-25 Identities = 217/310 (70%), Gaps = 3/310 (1%) Strand=Plus/Minus Query 29053 GTTTTCCTCGTCTACCCATTCGGTCAAGGTTCTTTTAGCGACGCGATGCCTTTGGGTATT 29112 |||||| | | |||||| | |||||||| |||| || | |||||| | || ||| Sbjct 977 GTTTTCTTGATTTACCCAATTGGTCAAGGAAGTTTTTTTGATGGTATGCCTCTAGGAATT 918 Query 29113 TCAGGCACCTTCAACTACATGCTGGTGTTCCAAGCCGAACATAACATTCTCATGCACCCG 29172 || | || ||||||| |||| | || || | || || || | |||||| ||| |||| Sbjct 917 TCTTGTACTTTCAACTTCATGATTGTATTTTAGGCTGAGCACA-CATTCTTATGTACCCA 859 Query 29173 TTCCACATGCTGGGCGTTGCTGGAGTGTTCGGTGGCTCGCTATTTAGTGCAATGCACGGT 29232 || || ||| | |||| ||| | || | || ||||| ||||| |||| ||||| ||| Sbjct 858 TTTCATATGTTAAGCGTAGCTAGTGTATACGACGGCTCCCTATTCAGTGTTATGCATGGT 799 Query 29233 TCGCTTGTCACGTCCTCGCTTGTGCGTG-AGACGACTGAAGACATCTCTCAGAACTATGG 29291 || |||| || | || | ||| | | | || || ||| | ||| || | || Sbjct 798 TC-CTTGGCAACTTCTAGTTTGATCAGGTAAACCACAGAAAATGAATCTGCTAATGAAGG 740 Query 29292 TTACAAGTTTGGACAAGAAGAAGAGACTTATAACATCGTAGCCGCTCACGGTTACTTTGG 29351 |||| ||| | ||||| |||| |||||||| |||| | ||||||| ||||||||||| Sbjct 739 ATACAGATTTAGTCAAGAGAAAGAAACTTATAATATCGCATCCGCTCATGGTTACTTTGG 680 Query 29352 ACGTTTGATC 29361 || |||||| Sbjct 679 CCGATTGATC 670 >seq85463 Length=6098 Score = 116 bits (128), Expect = 1e-21 Identities = 186/261 (71%), Gaps = 16/261 (6%) Strand=Plus/Plus Query 29337 TCACGGTTACTTTGGACGTTTGATCTTCCAATATGCTTCTTTCAATAATAGCCGTTCTCT 29396 ||| ||||||||||| || |||||||||||||||||| |||| | || ||||| | Sbjct 4019 TCATGGTTACTTTGGCCGATTGATCTTCCAATATGCTAGTTTCCACAACTCTCGTTCGTT 4078 Query 29397 ACACTTCTTCCTTGCTGCCTGGCCGGTGGTAGGGATTTGGTTCGCTGCCTTGGGCGTTTC 29456 ||||||| |||| ||||| ||||| || || || ||||||||| ||| || | || || Sbjct 4079 ACACTTCGTCCTAGCTGCTTGGCCTGTAGTGGGTATTTGGTTCACTG-CTAG---GTATC 4134 Query 29457 TAC--AATGGCGTTTAATCTGAACGGTTTTAACTTTAACCAGTCGCTTCTCGACAACAAT 29514 | ||||| || ||||| || ||||| || |||||| | || | | | || Sbjct 4135 AGCGTCATGGCCTTCAATCTAAATGGTTTCAATTTTAACAAATCCGTAGTTG------AT 4188 Query 29515 GGTC-GTGTCATTAATACTTGGGCTGATGTTCTCAATCGCGCTAACCTCGGCTTTGAAGT 29573 ||| |||| || | |||| |||| | |||| || |||||||| || | ||||| Sbjct 4189 AGTCAAAGTCA--AAGTCGTGGGTTGATATCATCAACCGTGCTAACCTTGGTATAGAAGT 4246 Query 29574 AATGCATGAGCGT-AATGCTC 29593 ||||||| | | ||||||| Sbjct 4247 TATGCATGCTCATAAATGCTC 4267 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146453130403578