Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ocimum_20tenuiflorum_20[genbank_20GCA_5F001278415.1_202015-09-02] 121,993 sequences; 332,616,730 total letters Query= NC_025464.1 Length=44147 Score E Sequences producing significant alignments: (Bits) Value seq46960 89.7 1e-13 seq85463 82.4 2e-11 >seq46960 Length=374 Score = 89.7 bits (98), Expect = 1e-13 Identities = 119/160 (74%), Gaps = 4/160 (3%) Strand=Plus/Plus Query 18756 TCTTTATATCGGCTGGTTTGGAACACTGATGATTCCGTGTCTCCTTG-CAGCTACTATTT 18814 |||||| || | ||||| || ||||||| || | ||| ||| | || ||| | | Sbjct 9 TCTTTACATTAGATGGTTCGGTGTTTTGATGATCCC-TACCTCATTGACCGCAACT-TCT 66 Query 18815 GT-TTCATTATTGCCTTCATTGCTGCACCTCCTGTAGACATTGATGGCATCCGCGAGCCT 18873 || || |||||| ||||||||||||| ||||| ||||| |||||||| || || || | | Sbjct 67 GTATTTATTATTACCTTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGAACTT 126 Query 18874 GTTGCAGGCAGTCTTCTTTATGGAAACAACATCATATCGG 18913 ||| | || ||| |||||||| |||||||| | || || Sbjct 127 GTTTCTGGATATCTACTTTATGGGAACAACATTAGATAGG 166 >seq85463 Length=6098 Score = 82.4 bits (90), Expect = 2e-11 Identities = 176/259 (68%), Gaps = 12/259 (5%) Strand=Plus/Plus Query 19428 TCATGGGTATTTTGGTCGGCTTATTTTCCAGTACGCATCCTTCAACAATAGCCGTTCTCT 19487 |||||| || ||||| || | || ||||| || || ||| |||| ||||| | Sbjct 4019 TCATGGTTACTTTGGCCGATTGATCTTCCAATATGCTAGTTTCCACAACTCTCGTTCGTT 4078 Query 19488 ACATTTCTTTTTGGCTGCTTGGCCTGTGGTTGGCATTTGGTTTGCCGCCCTTGGGGTAAG 19547 ||| ||| | | |||||||||||||| || || |||||||| | || | || | || Sbjct 4079 ACACTTCGTCCTAGCTGCTTGGCCTGTAGTGGGTATTTGGTTCACTGC--TAGGTATCAG 4136 Query 19548 CACCATGGCATTCAACTTGAATGGCTTTAACTTTAACCAGTCCCTTCTTGACAA-CAATG 19606 | |||||| ||||| | ||||| || || |||||| | ||| | |||| | ||| | Sbjct 4137 CGTCATGGCCTTCAATCTAAATGGTTTCAATTTTAACAAATCCGTAGTTGATAGTCAAAG 4196 Query 19607 GTCGTGTCATTGATACTTGGGCTGACATTCTCAATCGTGCTAACCTCGGCTTTGAGGTAA 19666 ||| | | |||| ||| || |||| ||||||||||| || | || || | Sbjct 4197 ------TCAAAGT--CGTGGGTTGATATCATCAACCGTGCTAACCTTGGTATAGAAGTTA 4248 Query 19667 TGCACGAACGT-AATGCTC 19684 |||| | | | ||||||| Sbjct 4249 TGCATGCTCATAAATGCTC 4267 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 140944322408994