Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ocimum_20tenuiflorum_20[genbank_20GCA_5F001278415.1_202015-09-02] 121,993 sequences; 332,616,730 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq55416 89.7 5e-13 seq66988 86.0 6e-12 seq69221 82.4 7e-11 >seq55416 Length=9261 Score = 89.7 bits (98), Expect = 5e-13 Identities = 110/147 (75%), Gaps = 5/147 (3%) Strand=Plus/Minus Query 25268 GATAAAGAGGGTATACCGCCCGATCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAA 25327 || ||||| || ||||| || |||||||| || || || | | ||| |||||| | ||| Sbjct 4043 GACAAAGAAGGCATACCTCCTGATCAGCAGAGGCTAATATTTGCCGGTAAACAATTGGAA 3984 Query 25328 GATGATAGAAA--TGTCAGCGATTACAATATTCAAAAAGAATCCACCATTCATTTAGTGT 25385 |||| ||||| || ||| |||||||||| || |||||||| || |||| | || | Sbjct 3983 GATGGTAGAACCTTGGCAG--ATTACAATATCCAGAAAGAATCAACACTTCACCTTGTTT 3926 Query 25386 TAAGATTGAGAGGAGG-AAAATGATCA 25411 ||||| | || ||||| | ||||||| Sbjct 3925 TAAGACTTAGGGGAGGTACTATGATCA 3899 >seq66988 Length=1372 Score = 86.0 bits (94), Expect = 6e-12 Identities = 143/207 (69%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 25172 AACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCC 25231 || ||||| | || || ||||| |||||||||| ||||||| |||| ||||| Sbjct 371 AAGATGCAGATCTTCGTGAAAACCCTAACCGGAAAGACGATCACTCTCGAGGTCGAGAGT 312 Query 25232 AACGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGAT 25291 ||||| ||||| | || || || || ||||| || || || ||||||||| Sbjct 311 TCTGATACCATCGACAACGTCAAGGCGAAGATCCAAGATAAGGAAGGAATTCCGCCCGAT 252 Query 25292 CAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTAC 25351 ||||| | || || | || ||| || || |||||||| | ||| | |||||| Sbjct 251 CAGCAGCGCCTGATCTTCGCCGGAAAGCAGCTCGAAGACGGACGAACCCTTGCGGATTAC 192 Query 25352 AATATTCAAAAAGAATCCACCATTCAT 25378 |||||||| || ||||| || ||||| Sbjct 191 AATATTCAGAAGGAATCGACTCTTCAT 165 >seq69221 Length=10640 Score = 82.4 bits (90), Expect = 7e-11 Identities = 106/145 (73%), Gaps = 1/145 (1%) Strand=Plus/Plus Query 25268 GATAAAGAGGGTATACCGCCCGATCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAA 25327 |||||||| ||||| || || || ||||| || || || | | || |||||||| ||| Sbjct 5878 GATAAAGAAGGTATCCCCCCTGACCAGCAGAGGCTTATATTTGCTGGTAAACAACTGGAA 5937 Query 25328 GATGATAGAAATGTCAGCGATTACAATATTCAAAAAGAATCCACCATTCATTTAGTGTTA 25387 |||| ||||| | | || || || || ||||||||||| || |||| | || || Sbjct 5938 GATGGTAGAACTTTGGCAGACTATAACATCCAAAAAGAATCAACACTTCACCTTGTTTTG 5997 Query 25388 AGATTGAGAGGAGGAA-AATGATCA 25411 || | || ||||||| |||||||| Sbjct 5998 AGGCTTAGGGGAGGAACAATGATCA 6022 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 444415669985760