Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ocimum_20tenuiflorum_20[genbank_20GCA_5F001278415.1_202015-09-02] 121,993 sequences; 332,616,730 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq109031 154 1e-32 seq111813 132 4e-26 seq95628 127 2e-24 seq70367 122 8e-23 seq117762 113 4e-20 seq99159 109 5e-19 seq9178 91.5 1e-13 seq109834 87.8 2e-12 seq4809 84.2 2e-11 >seq109031 Length=8095 Score = 154 bits (170), Expect = 1e-32 Identities = 174/232 (75%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 35508 TTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGG 35567 |||||||||| | ||| | ||||| ||| || || |||||||||||||||||| || | Sbjct 305 TTCCACCACGCAGCCTAAGCACCAGATGCAAAGTCGACTCCTTTTGAATGTTGTAGTCCG 246 Query 35568 CCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAG 35627 |||| || | | || || ||||| || || ||||| |||| || ||||||||||| | Sbjct 245 CCAAAGTCCTACCATCTTCTAGCTGTTTGCCGGCAAAAATCAGCCTCTGCTGGTCCGGTG 186 Query 35628 GAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTC---GCTCGATT 35684 | | | |||||||||| ||||| ||||| | | | | |||||| |||| | Sbjct 185 GGATTCCCTCCTTGTCCTGTATCTTAGCCTTCACATTATCGATCGTGTCCGAGCTC---T 129 Query 35685 CCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 |||| |||| ||||||||| || || |||||||| || ||||| |||||||| Sbjct 128 CCACTTCCAGCGTGATCGTCTTGCCGGTCAAAGTCTTGACAAAGATCTGCAT 77 Score = 131 bits (144), Expect = 2e-25 Identities = 148/197 (75%), Gaps = 6/197 (3%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| ||||| || ||||| || | ||| | | || || |||||||| || ||||| Sbjct 496 CTCCTTCTGAATATTATAATCAGCAAGGGTCCTTCCATCCTCGAGCTGCTTCCCAGCAAA 437 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || |||| ||||||||||| |||| || |||||||| |||||| ||||| | | Sbjct 436 GATTAACCTCTGCTGGTCCGGCGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTCACATT 377 Query 35665 TGCCACCGTGTC---GCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTT 35721 | | ||||| |||| |||||||||| |||||||| || ||||||| ||| || Sbjct 376 ATCAATGGTGTCCGAGCTC---TCCACCTCCAAAGTGATCGTCTTCCCCGTCAGAGTCTT 320 Query 35722 CACAAATATCTGCATTC 35738 |||||| |||||||||| Sbjct 319 CACAAAGATCTGCATTC 303 >seq111813 Length=4153 Score = 132 bits (146), Expect = 4e-26 Identities = 161/218 (74%), Gaps = 6/218 (3%) Strand=Plus/Plus Query 35524 CAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTC 35583 || ||||| ||| | || |||||| || |||||||| ||||| | || | | || Sbjct 1115 CAGCACCAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGCTAGCGTCCAGCCATC 1174 Query 35584 GTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTC 35643 || |||||||||||||||||||||| |||||||||||||| ||||| || |||||||| Sbjct 1175 TTCGAGCTGCTTACCCGCAAATATCAGCCGCTGCTGGTCCGGAGGAATGCCTTCCTTGTC 1234 Query 35644 CATGATCTTTTGCTTCAGAGTTGCCACCGTGTC---GCTCGATTCCACCTCCACCGTGAT 35700 | ||||| |||| | | | | ||||| |||| |||||||||| ||||| Sbjct 1235 CTGAATCTTGGCTTTCACATTGTCAATTGTGTCGGAGCTC---TCCACCTCCAAAGTGAT 1291 Query 35701 CGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATTC 35738 || || || |||||||| || | || |||||||||| Sbjct 1292 GGTCTTTCCAGTCAAAGTCTTGATGAAAATCTGCATTC 1329 >seq95628 Length=1400 Score = 127 bits (140), Expect = 2e-24 Identities = 167/230 (73%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 || || | |||||||| |||||| || | || |||||| || ||||||||||||||| Sbjct 233 CCTCCTCTTAACCTCAGCACCAAGTGCAGGGTGGACTCCTTCTGGATGTTGTAATCGGCC 174 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 || || || | || || |||||||| || ||||| || |||| |||||| |||| ||| Sbjct 173 AACGTACGACCATCCTCGAGCTGCTTCCCGGCAAAGATTAACCTCTGCTGATCCGGGGGA 114 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTC---GCTCGATTCC 35686 | | |||||||||| ||||| ||||| | | | | |||||| ||| ||| Sbjct 113 ATCCCCTCCTTGTCCTGAATCTTCGCCTTCACATTGTCGATCGTGTCAGAGCT---TTCA 57 Query 35687 ACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 ||||||| ||||| || || || |||| || || || || || ||||| Sbjct 56 ACCTCCAAGGTGATGGTCTTCCCGGTCAGTGTCTTGACGAAGATTTGCAT 7 Score = 96.9 bits (106), Expect = 3e-15 Identities = 139/195 (71%), Gaps = 6/195 (3%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 ||| || || |||||||| || || | ||| | | || |||| |||||| || ||||| Sbjct 426 CTCTTTCTGGATGTTGTAGTCAGCAAGGGTCCTTCCATCCTCCAACTGCTTCCCAGCAAA 367 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 ||||||| ||||||||||| || | | |||||||||| ||||| ||| | | | Sbjct 366 GATCAACCTCTGCTGGTCCGGTGGGATACCCTCCTTGTCCTGAATCTTAGCCTTGACATT 307 Query 35665 TGCCACCGTGTC---GCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTT 35721 | | || || |||| |||||||||| ||||| || || || |||| || || Sbjct 306 GTCAATGGTATCCGAGCTC---TCCACCTCCAAGGTGATGGTCTTCCCTGTCAGTGTCTT 250 Query 35722 CACAAATATCTGCAT 35736 ||||| |||||||| Sbjct 249 GACAAAAATCTGCAT 235 >seq70367 Length=2979 Score = 122 bits (134), Expect = 8e-23 Identities = 168/231 (73%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | ||||| ||||| || || || ||| || ||||||||||| || ||| Sbjct 284 CCACCACGGAGCCTCAGGACCAAGTGCAAGGTCGACTCTTTCTGAATGTTGTAGTCCGCC 225 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 ||||| || | || || |||||||| || ||||| || | || |||||| |||| ||| Sbjct 224 AAGGTGCGGCCATCCTCAAGCTGCTTTCCGGCAAAGATAAGCCTCTGCTGATCCGGTGGA 165 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTG-CCACCGTGTC---GCTCGATTC 35685 | || ||||||||| |||||| ||||| |||| | | ||||| |||| || Sbjct 164 ATGCCTTCCTTGTCCTGGATCTTGGCCTTCA-CGTTGTCAATAGTGTCGGAGCTC---TC 109 Query 35686 CACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 ||||| | ||||| || || || || | || || ||||| |||||||| Sbjct 108 GACCTCAAGGGTGATGGTCTTCCCTGTAAGGGTCTTGACAAAGATCTGCAT 58 Score = 122 bits (134), Expect = 8e-23 Identities = 142/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || ||||||||||| |||||||| || | || ||||||||||| || ||||| Sbjct 477 CTCCTTCTGGATGTTGTAATCAGCCAAGGTACGGCCATCTTCCAGCTGCTTCCCAGCAAA 418 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 ||||||| |||||| |||| || | | |||||||||| ||||| ||| | | | Sbjct 417 GATCAACCTCTGCTGATCCGGTGGGATACCCTCCTTGTCCTGAATCTTGGCCTTTACATT 358 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | |||||| ||| ||||| | ||||| ||||| || || | || ||||| Sbjct 357 GTCAATTGTGTCGGAGCTTTCAACCTCTAGGGTGATGGTTTTCCCGGTAAGGGTCTTCAC 298 Query 35725 AAATATCTGCAT 35736 ||| |||||||| Sbjct 297 AAAAATCTGCAT 286 >seq117762 Length=309 Score = 113 bits (124), Expect = 4e-20 Identities = 166/231 (72%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | | |||||||| | || ||||| || ||||||||||| ||| Sbjct 28 CCACCACGGAGACGGAGGACCAAATGGAGGGTGGATTCCTTCTGGATGTTGTAATCAGCC 87 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 ||||| || | || || |||||||| || ||||| ||||||| ||||||||||| ||| Sbjct 88 AAGGTGCGTCCATCCTCGAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCCGGGGGA 147 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTG-CCACCGTGTC---GCTCGATTC 35685 | || |||||||||| |||||| ||| | |||| | | |||||| |||| || Sbjct 148 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGA-CGTTGTCAATCGTGTCCGAGCTC---TC 203 Query 35686 CACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || || | ||||| || || || || | || || || || || ||||| Sbjct 204 GACTTCAAGAGTGATGGTCTTGCCGGTAAGGGTCTTGACGAAGATTTGCAT 254 >seq99159 Length=5808 Score = 109 bits (120), Expect = 5e-19 Identities = 142/195 (73%), Gaps = 6/195 (3%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 ||| || || ||||||||||| || | || | | || |||| ||||||||| ||||| Sbjct 1386 CTCTTTCTGGATGTTGTAATCTGCAAGAGTCCTTCCATCTTCCAACTGCTTACCAGCAAA 1445 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 ||||| || ||| ||||||| || | | |||||| ||| ||||| ||||| | | Sbjct 1446 TATCAGCCTCTGTTGGTCCGGTGGGATACCCTCCTTATCCTGTATCTTCGCCTTCACATT 1505 Query 35665 TGCCACCGTGTCGCTCGA---TTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTT 35721 | | ||||| ||| |||||||||| |||||||| || || |||| || || Sbjct 1506 GTCGATTGTGTC---CGAACTCTCCACCTCCAATGTGATCGTCTTCCCAGTCAGCGTCTT 1562 Query 35722 CACAAATATCTGCAT 35736 ||||||||||||||| Sbjct 1563 CACAAATATCTGCAT 1577 Score = 105 bits (116), Expect = 6e-18 Identities = 141/195 (72%), Gaps = 6/195 (3%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 ||| || |||||||||||||| || | || || | || || |||||||| || ||||| Sbjct 2070 CTCTTTCTGAATGTTGTAATCAGCAAGAGTGCGGCCATCTTCGAGCTGCTTTCCAGCAAA 2129 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 ||||| | ||||||||| | |||| || |||||||||| ||||| ||| | | | Sbjct 2130 GATCAATCTCTGCTGGTCTGGGGGAATGCCCTCCTTGTCCTGAATCTTGGCCTTAACATT 2189 Query 35665 TGCCACCGTGTCG---CTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTT 35721 | | |||||| ||| ||||| || | |||||| || || ||||| || || || Sbjct 2190 GTCGATGGTGTCGGAACTC---TCCACTTCGAGCGTGATTGTCTTGCCCGTTAAGGTCTT 2246 Query 35722 CACAAATATCTGCAT 35736 ||||| || ||||| Sbjct 2247 AACAAAGATTTGCAT 2261 Score = 104 bits (114), Expect = 2e-17 Identities = 163/232 (70%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 || || || |||| |||||||| ||| | || |||||| ||||| ||||| || || Sbjct 1579 CCTCCTCGCAACCGCAACACCAGATGAAGAGTCGACTCCTTCTGAATATTGTAGTCCGCT 1638 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | || || | || || |||||||| || ||||| ||||||| ||||||||||| || Sbjct 1639 AGAGTGCGTCCATCCTCGAGCTGCTTGCCAGCAAAAATCAACCTCTGCTGGTCCGGGGGT 1698 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGA---TTCC 35686 | | |||||||| ||||| |||| | | | | ||||| ||| || Sbjct 1699 ATCCCTTCCTTGTCTTGAATCTTAGCTTTCACATTATCAATTGTGTC---CGAACTCTCA 1755 Query 35687 ACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATTC 35738 ||||||| || || ||||| ||||| | || || ||||| |||||||||| Sbjct 1756 ACCTCCAGGGTTATGGTTTTGCCCGTGAGGGTCTTGACAAAGATCTGCATTC 1807 >seq9178 Length=1540 Score = 91.5 bits (100), Expect = 1e-13 Identities = 100/133 (75%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || ||||| ||||| || | || ||| | || |||||||||||||| ||||| Sbjct 147 CTCCTTCTGGATGTTATAATCAGCAAGTGTACGCCCATCTTCCAGCTGCTTACCAGCAAA 88 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 ||||||| ||||||||| | |||| || ||||| || |||||| ||||| | | Sbjct 87 GATCAACCTCTGCTGGTCAGGCGGAATGCCTTCCTTATCTTGAATCTTTGCCTTCACATT 28 Query 35665 TGCCACCGTGTCG 35677 | || |||||| Sbjct 27 ATCAACGGTGTCG 15 >seq109834 Length=6695 Score = 87.8 bits (96), Expect = 2e-12 Identities = 120/165 (73%), Gaps = 7/165 (4%) Strand=Plus/Plus Query 35580 CGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCT 35639 |||| || |||||||| || || || |||| || ||||||||||| ||||| | ||||| Sbjct 3 CGTCCTCGAGCTGCTTGCCGGCGAAGATCAGCCTCTGCTGGTCCGGAGGAATTCCCTCCT 62 Query 35640 TGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTC---GCTCGATTCCACCTCCACCG 35696 ||||| |||||| ||| | | | | ||||| |||| |||||||| | | Sbjct 63 TGTCCTGGATCTTAGCCTTGACGTTATCTATGGTGTCCGAGCTC---TCCACCTCGAGGG 119 Query 35697 TGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATTCTGT 35741 |||| || || || || | |||||||| || ||||||| ||||| Sbjct 120 TGATGGTCTTGCCGGTGAGGGTTTTCACGAAGATCTGCA-TCTGT 163 >seq4809 Length=1103 Score = 84.2 bits (92), Expect = 2e-11 Identities = 126/174 (72%), Gaps = 9/174 (5%) Strand=Plus/Plus Query 35572 GGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAAC 35631 ||| || |||| || |||||||| || || || ||||||| ||||||||| | |||| Sbjct 2 GGTACGGCCGTCCTCAAGCTGCTTTCCGGCGAAGATCAACCTCTGCTGGTCTGGGGGAAT 61 Query 35632 GCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCC-ACCGTGTCG---CTCGATTCCA 35687 | |||||||| |||||| ||| | |||| | | |||||| ||| || | Sbjct 62 TCCTTCCTTGTCTTGGATCTTAGCCTTGAC-GTTGTCGATGGTGTCGGAGCTC---TCGA 117 Query 35688 CCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATTCTGT 35741 |||| | ||||| || ||||| || | ||||||||||| ||||||| ||||| Sbjct 118 CCTCAAGGGTGATGGTCTTACCGGTGAGGGTTTTCACAAAGATCTGCA-TCTGT 170 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450106179204440