Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ocimum_20tenuiflorum_20[genbank_20GCA_5F001278415.1_202015-09-02] 121,993 sequences; 332,616,730 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq99159 138 1e-27 seq111813 127 2e-24 seq66988 127 2e-24 seq117762 113 5e-20 seq109031 89.7 5e-13 >seq99159 Length=5808 Score = 138 bits (152), Expect = 1e-27 Identities = 168/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 134485 TTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGC 134544 |||| || || || | | ||| | ||| || ||| ||||||||| |||||||||||| Sbjct 1805 TTCCACCCCTTAGCCTGAGCACCAAGTGGAGAGTGCTTTCCTTTTGGATGTTGTAGTCGG 1864 Query 134545 CAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCG 134604 ||| || | || |||||||| ||||| || |||||||| | ||||||||| || | Sbjct 1865 CAAGTGTTCGTCCATCATCGAGCTGCTTGCCAGCGAAAATCAACCTCTGCTGATCTGGAG 1924 Query 134605 GTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCA 134664 | ||||| || || ||||| || || ||||| ||| | || ||||| || | Sbjct 1925 GAATGCCCTCCTTATCTTGGATCTTGGCCTTGACATTGTCTATGGTATCGGAGCTCTCAA 1984 Query 134665 CGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 | || ||||||||||| || || ||||| |||||||| || |||||||| Sbjct 1985 CCTCAAGAGTAATGGTCTTTCCAGTTAAGGTTTTAACAAAGATTTGCAT 2033 Score = 123 bits (136), Expect = 3e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 ||||||| | |||||||| || || || || || ||||| ||||| |||||||| | Sbjct 1579 CCTCCTCGCAACCGCAACACCAGATGAAGAGTCGACTCCTTCTGAATATTGTAGTCCGCT 1638 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| | || |||||||| ||||| ||||||||||| | |||||| || || ||| Sbjct 1639 AGAGTGCGTCCATCCTCGAGCTGCTTGCCAGCAAAAATCAACCTCTGCTGGTCCGGGGGT 1698 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || ||||| || |||||||| || ||| || || | |||||| || || || Sbjct 1699 ATCCCTTCCTTGTCTTGAATCTTAGCTTTCACATTATCAATTGTGTCCGAACTCTCAACC 1758 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATT 134714 || || || |||||||| || || | || || || || || |||||| Sbjct 1759 TCCAGGGTTATGGTTTTGCCCGTGAGGGTCTTGACAAAGATCTGCATT 1806 Score = 122 bits (134), Expect = 9e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || |||||||| || | || | || || || || ||||| || ||||||||||| || Sbjct 2491 CCACCTCTGAGACGAAGGACCAAATGGAGGGTAGACTCCTTCTGTATGTTGTAGTCTGCA 2550 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| || || ||||| |||||||| ||||| ||||| | ||||| || || || Sbjct 2551 AGGGTGCGACCATCTTCGAGTTGTTTGCCCGCAAAGATCAACCTTTGCTGGTCCGGAGGG 2610 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || ||||| || || || ||||| || || || | |||||| || |||||| Sbjct 2611 ATCCCTTCCTTGTCCTGGATTTTAGCCTTTACGTTATCGATTGTGTCTGAGCTTTCCACC 2670 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||||| || || || || || |||| ||||| ||||| || ||||| Sbjct 2671 TCGAGGGTGATTGTCTTGCCTGTTAGGGTTTTCACGAAGATCTGCAT 2717 Score = 113 bits (124), Expect = 5e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || | ||| || | || ||||| || || || || || ||||||||||| || || Sbjct 2035 CCACCACGGAGGCGAAGGACCAGGTGGAGAGTAGACTCTTTCTGAATGTTGTAATCAGCA 2094 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| | || |||||||| || || ||||| ||||| | |||||| || || || Sbjct 2095 AGAGTGCGGCCATCTTCGAGCTGCTTTCCAGCAAAGATCAATCTCTGCTGGTCTGGGGGA 2154 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 ||||| || || || ||||| || || || ||| | |||||||| ||||| Sbjct 2155 ATGCCCTCCTTGTCCTGAATCTTGGCCTTAACATTGTCGATGGTGTCGGAACTCTCCACT 2214 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||||| || || || || || ||||| || ||||| || |||||||| Sbjct 2215 TCGAGCGTGATTGTCTTGCCCGTTAAGGTCTTAACAAAGATTTGCAT 2261 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || | ||| || | || | ||| || || || ||||| || ||||||||||| || Sbjct 2263 CCACCACGGAGGCGGAGGACCAAGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCCGCA 2322 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| | ||| || ||||| || || || || ||||| | |||||||| || || Sbjct 2323 AGAGTGCGGCCGTCCTCAAGCTGCTTTCCCGCGAAGATCAACCTTTGCTGATCTGGGGGA 2382 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 ||||| || || ||||| || || || || ||| | |||||||| || || Sbjct 2383 ATGCCCTCCTTGTCTTGGATCTTAGCCTTTACGTTGTCGATGGTGTCGGAACTCTCAACT 2442 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || ||||| || || || |||| || |||||||| || ||||| Sbjct 2443 TCAAGGGTAATTGTCTTCCCAGTTAGGGTCTTAACGAAGATCTGCAT 2489 >seq111813 Length=4153 Score = 127 bits (140), Expect = 2e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 |||||||| | |||| ||| || || || || || ||||| || |||||||||||| | Sbjct 1101 CCTCCTCTCAAACGCAGCACCAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGCT 1160 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | || || |||||||| || || ||||| |||| |||||||| || || || Sbjct 1161 AGCGTCCAGCCATCTTCGAGCTGCTTACCCGCAAATATCAGCCGCTGCTGGTCCGGAGGA 1220 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 |||||||| || || ||||| || ||| || ||| | ||||||||| ||||| Sbjct 1221 ATGCCTTCCTTGTCCTGAATCTTGGCTTTCACATTGTCAATTGTGTCGGAGCTCTCCACC 1280 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATT 134714 || | ||| ||||| || || || ||||| || | |||||| |||||| Sbjct 1281 TCCAAAGTGATGGTCTTTCCAGTCAAAGTCTTGATGAAAATCTGCATT 1328 Score = 111 bits (122), Expect = 2e-19 Identities = 166/232 (72%), Gaps = 3/232 (1%) Strand=Plus/Plus Query 134485 TTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-G 134543 |||| || | || |||| |||||| || || |||||||||||||||||| |||| || | Sbjct 1327 TTCCACCACGAAGACGCAGCACGAGATGAAGGGTGGATTCCTTTTGAATGCTGTAATCTG 1386 Query 134544 CC-AACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGG 134602 || | | | || | || || || || || || ||||| | || || ||||| ||||| Sbjct 1387 CCTAGTGTTCTGCCA-TCTTCCAGTTGCTTCCCAGCAAAGAAAAATCGTTGCTGCTCGGG 1445 Query 134603 CGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTC 134662 || || |||||||| |||| ||||| ||||| ||| | ||||| || ||| Sbjct 1446 GGGGATCCCTTCTTTATCTTAGATTTTGGCCTTGACGTTGTCGATAGTGTCTGAGCTTTC 1505 Query 134663 CACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATT 134714 || || || || || || || || | | |||||| |||||||| |||||| Sbjct 1506 AACTTCAAGGGTTATCGTCTTGCCAGCAAGAGTTTTCACGAAAATCTGCATT 1557 >seq66988 Length=1372 Score = 127 bits (140), Expect = 2e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || | ||| || | ||||| || || || |||||||| ||||| ||||| || || Sbjct 142 CCGCCACGGAGACGAAGAACGAGATGAAGAGTCGATTCCTTCTGAATATTGTAATCCGCA 201 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| | ||| |||||||| || || || || |||| ||||||||||||||||| Sbjct 202 AGGGTTCGTCCGTCTTCGAGCTGCTTTCCGGCGAAGATCAGGCGCTGCTGATCGGGCGGA 261 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || ||||| || ||||| || || ||||| ||| | || || || || || Sbjct 262 ATTCCTTCCTTATCTTGGATCTTCGCCTTGACGTTGTCGATGGTATCAGAACTCTCGACC 321 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTT 134716 |||||||| || || || ||||||| ||||| ||||| || ||||| || Sbjct 322 TCGAGAGTGATCGTCTTTCCGGTTAGGGTTTTCACGAAGATCTGCATCTT 371 Score = 100 bits (110), Expect = 3e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 134574 CCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGT 134633 || || || ||||||||||||||||| ||||| || || ||||| || ||||| ||| Sbjct 1 CCGGCGAAGATCAAACGCTGCTGATCCGGCGGAATCCCCTCTTTATCCTGAATCTTTGCC 60 Query 134634 TTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAA 134693 ||||| || | ||||||||| || || |||||||| || || || || |||| Sbjct 61 TTGACGTTATCGATTGTGTCGGAGCTCTCGACCTCGAGAGTGATTGTCTTCCCCGTTAGT 120 Query 134694 GTTTTAACGAAAATTTGCAT 134713 ||||||||||| || ||||| Sbjct 121 GTTTTAACGAAGATCTGCAT 140 >seq117762 Length=309 Score = 113 bits (124), Expect = 5e-20 Identities = 149/204 (73%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 134511 TGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCCAACGGTGTGAGAGTCGTCGAGCTG 134569 || || ||||||||||| || |||||||| || ||||| |||| | || |||||||| Sbjct 52 TGGAGGGTGGATTCCTTCTGGATGTTGTAATCAGCCAA-GGTGCGTCCATCCTCGAGCTG 110 Query 134570 TTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTT 134629 ||||| ||||| ||||| | |||||| || || || ||||| || || || || || || Sbjct 111 CTTGCCGGCAAAGATCAACCTCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTT 170 Query 134630 TTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGT 134689 ||||| ||| | ||||| || || || || ||||| ||||| || ||||| Sbjct 171 GGCCTTGACGTTGTCAATCGTGTCCGAGCTCTCGACTTCAAGAGTGATGGTCTTGCCGGT 230 Query 134690 TAAAGTTTTAACGAAAATTTGCAT 134713 | || || ||||| |||||||| Sbjct 231 AAGGGTCTTGACGAAGATTTGCAT 254 >seq109031 Length=8095 Score = 89.7 bits (98), Expect = 5e-13 Identities = 148/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 134504 CACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCCAACGGTGTGAGAGTCGT 134562 ||| || || | || || |||||||||||||||||||| ||||| | | | || | Sbjct 286 CACCAGATGCAAAGTCGACTCCTTTTGAATGTTGTAGTCCGCCAAAGTCCTACCA-TCTT 228 Query 134563 CGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTT 134622 | ||||||||||| |||||||||| | |||||| || || || || || || || || | Sbjct 227 CTAGCTGTTTGCCGGCAAAAATCAGCCTCTGCTGGTCCGGTGGGATTCCCTCCTTGTCCT 168 Query 134623 GAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTT 134682 | || || || || || | ||||| || ||||| || || || || || | Sbjct 167 GTATCTTAGCCTTCACATTATCGATCGTGTCCGAGCTCTCCACTTCCAGCGTGATCGTCT 108 Query 134683 TACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 | ||||| ||||| || || || || ||||| Sbjct 107 TGCCGGTCAAAGTCTTGACAAAGATCTGCAT 77 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 504627711662360