Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ocimum_20tenuiflorum_20[genbank_20GCA_5F001278415.1_202015-09-02] 121,993 sequences; 332,616,730 total letters Query= NC_026923.1 Length=179110 Score E Sequences producing significant alignments: (Bits) Value seq115592 161 1e-34 seq85463 145 9e-30 seq31467 132 6e-26 seq99465 116 4e-21 seq110764 105 8e-18 seq33420 86.0 7e-12 seq100051 84.2 3e-11 >seq115592 Length=218 Score = 161 bits (178), Expect = 1e-34 Identities = 166/217 (76%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 159935 GAGTTGCTGGTATACTAGGTGGAGCACTGTTGTGTGCAATCCATGGTGCTACTGTAGAGA 159994 ||||||||||| || | || | || || | || || || ||||||||||| ||||| | Sbjct 218 GAGTTGCTGGTGTATTGGGGGCTGCTTTGCTATGCGCTATTCATGGTGCTACCGTAGAAA 159 Query 159995 ACACATTGTTTGAAGATGGAGAACAAGCAAACACATTTAAGGCGTTTGAGCCTACTCAAG 160054 | || || ||||||||||| || ||||| ||||| || ||| | || ||||||| Sbjct 158 ATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCTTTTAACCCAACTCAAG 99 Query 160055 AAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGTGTTG 160114 ||||| |||||||| ||||||||||| |||||||| ||||| || ||||| || |||| Sbjct 98 CCGAAGAAACTTATTCCATGGTCACTGCTAACCGCTTTTGGTCCCAAATCTTTGGGGTTG 39 Query 160115 CATTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTT 160151 | ||||| || || || ||| | ||||| || ||||| Sbjct 38 CTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTT 2 >seq85463 Length=6098 Score = 145 bits (160), Expect = 9e-30 Identities = 181/246 (74%), Gaps = 13/246 (5%) Strand=Plus/Plus Query 158381 CATGGCTACTTCGGTCGTTTGATCTTCCAATACGCTTCATTCAACAACTCCCGTTCCTTG 158440 ||||| ||||| || || |||||||||||||| ||| ||| ||||||| ||||| || Sbjct 4020 CATGGTTACTTTGGCCGATTGATCTTCCAATATGCTAGTTTCCACAACTCTCGTTCGTTA 4079 Query 158441 CACTTCTTCCTTGCTGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGTGTCA 158500 |||||| |||| ||||| |||||||| || || || |||||||| | || | || ||| Sbjct 4080 CACTTCGTCCTAGCTGCTTGGCCTGTAGTGGGTATTTGGTTCACTG--CTAG--GTATCA 4135 Query 158501 AC--CATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGG 158558 | |||||| ||||| || || |||||||| || ||| | ||| | ||||| |||| Sbjct 4136 GCGTCATGGCCTTCAATCTAAATGGTTTCAATTTTAACAAATCCGTAGTTGATAGTCAAA 4195 Query 158559 GTCGTGTGTTGAACACCTGGGCAGATGTACTGAACCGCGCTGGTCTTGGTATGGAAGTTA 158618 ||| || | |||| ||| | | ||||| ||| |||||||| ||||||| Sbjct 4196 GTC-------AAAGTCGTGGGTTGATATCATCAACCGTGCTAACCTTGGTATAGAAGTTA 4248 Query 158619 TGCATG 158624 |||||| Sbjct 4249 TGCATG 4254 >seq31467 Length=18065 Score = 132 bits (146), Expect = 6e-26 Identities = 172/235 (73%), Gaps = 2/235 (1%) Strand=Plus/Minus Query 158227 CGGTGTTGCTGGGGTATTCGGTGGATCTCTTTTCTCTGCTATGCATGGAAGTCTCGTTAC 158286 ||| || ||||| |||||||| || || || ||| |||||||||||| | || || Sbjct 5479 CGGCGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAAC 5420 Query 158287 TTCCTCACTCGTTCGTG-AAACGACTGAAACAGAGTCACAGAACTACGGTTATAAGTTCG 158345 ||| | | | ||| | |||| || |||| || || || | ||||| | | || Sbjct 5419 TTC-TAGTTTGATCGGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATCCG 5361 Query 158346 GTCAAGAAGAAGAGACCTACAACATCGTTGCAGCCCATGGCTACTTCGGTCGTTTGATCT 158405 ||||||| ||||| || || || ||||| || || ||||| ||||| | || ||||||| Sbjct 5360 GTCAAGAGGAAGAAACTTATAATATCGTAGCCGCTCATGGTTACTTTAGACGATTGATCT 5301 Query 158406 TCCAATACGCTTCATTCAACAACTCCCGTTCCTTGCACTTCTTCCTTGCTGCATG 158460 ||||||| ||| ||||||||||| ||||| || |||||||| || ||||| || Sbjct 5300 TCCAATATGCTAGTTTCAACAACTCTCGTTCGTTACACTTCTTTCTAGCTGCTTG 5246 >seq99465 Length=4513 Score = 116 bits (128), Expect = 4e-21 Identities = 202/290 (70%), Gaps = 8/290 (3%) Strand=Plus/Plus Query 158117 GGTCAAGGTTCTTTCTCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATG 158176 |||||||| ||| || |||| |||||||| || || ||| ||||||| |||| |||| Sbjct 2967 GGTCAAGGAAGTTTTTCTGATGGTATGCCTCCAGGAATTTCTTGTACTTTCAACTTCATG 3026 Query 158177 CTTGTATTCCAAGCAGAACACAACATCCTTATGCACCCGTTCCATATGCTCGGTGTTGCT 158236 |||||||| | || || || || || |||||||| | |||||| || || || Sbjct 3027 ATTGTATTCTAGGCTGAGCATAATATTCTTATGCA-----TTCATATGTGAGGCGTAGCG 3081 Query 158237 GGGGTATTCGGTGGATCTCTTTTCTCTGCTATGCATGGAAGTCTCGTTACTTCCTCACTC 158296 || ||||||| || || || ||| |||||||||||| | || |||| || | Sbjct 3082 GGTGTATTCGACGGCTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACTT-CTAGTTT 3140 Query 158297 GTTC-GTGAAACGACTGAAACAGAGTCACAGAACTACGGTTATAAGTTCGGTCAAGAAGA 158355 | || | |||| || |||| || | || | ||||| || |||||||| | | | Sbjct 3141 GATCAGGTAAACCACAGAAAATGAAACTGCTAATGAAGGTTACAAATTCGGTCAGGGA-A 3199 Query 158356 AGAGACCTACAACATCGTTGCAGCCCATGGCTACTTCGGTCGTTTGATCT 158405 ||| | || || ||||| || || |||| ||||| || || ||||||| Sbjct 3200 AGAAGCTTATAATATCGTAGCTGCATATGGTTACTTTGGCCGATTGATCT 3249 >seq110764 Length=2751 Score = 105 bits (116), Expect = 8e-18 Identities = 90/109 (83%), Gaps = 4/109 (4%) Strand=Plus/Plus Query 158432 CGTTCCTTGCACTTCTTCCTTGCTGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTT 158491 ||||| || ||||||||||| ||||| |||||||| || || ||||||||||| | ||| Sbjct 1540 CGTTCGTTACACTTCTTCCTAGCTGCTTGGCCTGTAGTGGGTATCTGGTTCACTG--CTT 1597 Query 158492 GGCGTGTCA--ACCATGGCATTCAACCTGAACGGTTTCAACTTCAACCA 158538 || ||| |||||||| |||||||| ||||||||||| |||||||| Sbjct 1598 TAGGTATCAACACCATGGCTTTCAACCTAAACGGTTTCAATTTCAACCA 1646 >seq33420 Length=1148 Score = 86.0 bits (94), Expect = 7e-12 Identities = 91/119 (76%), Gaps = 1/119 (1%) Strand=Plus/Minus Query 160273 ACCTTCTACACCAAGAACATCCTATTGAATGAAGGACTTCGTGCTTGGATGGCACCTGCT 160332 || ||||||||||| || || ||||| || |||| ||| |||||||||||| || Sbjct 1097 ACTTTCTACACCAAAAATATTCTATTAAACAAAGGTATTCATGCTTGGATGGCGGCTCAA 1038 Query 160333 GATCAACCACATGAAAACTTTATCTTCCCTGAGGAAGTACTACCTAGAGGTAACGCACT 160391 ||||| || ||||||| |||| ||||||||||| || ||||| | || ||||| || Sbjct 1037 GATCAGCC-TATGAAAATCTTATATTCCCTGAGGAGGTTCTACCATGTGGAAACGCTCT 980 >seq100051 Length=9184 Score = 84.2 bits (92), Expect = 3e-11 Identities = 70/86 (81%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 158399 TTGATCTTCCAATACGCTTCATTCAACAACTCCCGTTCCTTGCACTTCTTCCTTGCTGCA 158458 ||||||||| |||| ||| |||||||| || ||||| || ||||||||||| |||| Sbjct 2493 TTGATCTTCTAATATGCTAGTTTCAACAATTCTCGTTCGTTACACTTCTTCCTAACTGCT 2434 Query 158459 TGGCCTGTTGTCGGCATCTGGTTCAC 158484 |||||||| | || ||||||||||| Sbjct 2433 TGGCCTGTAATGGGTATCTGGTTCAC 2408 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 572150188539600