Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ocimum_20tenuiflorum_20[genbank_20GCA_5F001278415.1_202015-09-02] 121,993 sequences; 332,616,730 total letters Query= NC_026924.1 Length=174885 Score E Sequences producing significant alignments: (Bits) Value seq85463 156 5e-33 seq31467 129 7e-25 seq115592 125 8e-24 seq110764 122 1e-22 seq96029 93.3 5e-14 >seq85463 Length=6098 Score = 156 bits (172), Expect = 5e-33 Identities = 181/244 (74%), Gaps = 9/244 (4%) Strand=Plus/Plus Query 160665 CATGGTTACTTCGGTCGTTTGATCTTCCAATATGCATCATTCAACAACTCCCGTTCACTT 160724 ||||||||||| || || ||||||||||||||||| ||| ||||||| ||||| | Sbjct 4020 CATGGTTACTTTGGCCGATTGATCTTCCAATATGCTAGTTTCCACAACTCTCGTTCGTTA 4079 Query 160725 CACTTCTTCCTGGCAGCATGGCCTGTAGTCGGAATCTGGTTCACTGCTCTTGGTGTTAGC 160784 |||||| |||| || || ||||||||||| || || |||||||||| || ||| | ||| Sbjct 4080 CACTTCGTCCTAGCTGCTTGGCCTGTAGTGGGTATTTGGTTCACTG--CTAGGTATCAGC 4137 Query 160785 ACCATGGCATTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCCTCGATGGTCAAGGT 160844 |||||| ||||| || || |||||||| || ||| | ||| | | ||| ||||| || Sbjct 4138 GTCATGGCCTTCAATCTAAATGGTTTCAATTTTAACAAATCCGTAGTTGATAGTCAAAGT 4197 Query 160845 CGTGTACTGAACACCTGGGCAGACGTACTGAATCGTGCTGGTCTTGGTATGGAAGTTATG 160904 | || | |||| || | | || |||||| |||||||| ||||||||| Sbjct 4198 C-------AAAGTCGTGGGTTGATATCATCAACCGTGCTAACCTTGGTATAGAAGTTATG 4250 Query 160905 CATG 160908 |||| Sbjct 4251 CATG 4254 >seq31467 Length=18065 Score = 129 bits (142), Expect = 7e-25 Identities = 171/235 (73%), Gaps = 2/235 (1%) Strand=Plus/Minus Query 160511 CGGCGTTGCTGGGGTATTCGGTGGATCTTTGTTCTCTGCTATGCACGGAAGTCTCGTTAC 160570 |||||| ||||| |||||||| || || | ||| ||||||||| || | || || Sbjct 5479 CGGCGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAAC 5420 Query 160571 TTCCTCACTCGTTCGTG-AAACGACTGAAACAGAGTCACAGAACTACGGTTATAAGTTCG 160629 ||| | | | ||| | |||| || |||| || || || | ||||| | | || Sbjct 5419 TTC-TAGTTTGATCGGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATCCG 5361 Query 160630 GTCAAGAGGAAGAGACCTACAACATCGTCGCAGCCCATGGTTACTTCGGTCGTTTGATCT 160689 ||||||||||||| || || || ||||| || || ||||||||||| | || ||||||| Sbjct 5360 GTCAAGAGGAAGAAACTTATAATATCGTAGCCGCTCATGGTTACTTTAGACGATTGATCT 5301 Query 160690 TCCAATATGCATCATTCAACAACTCCCGTTCACTTCACTTCTTCCTGGCAGCATG 160744 |||||||||| ||||||||||| ||||| | |||||||| || || || || Sbjct 5300 TCCAATATGCTAGTTTCAACAACTCTCGTTCGTTACACTTCTTTCTAGCTGCTTG 5246 >seq115592 Length=218 Score = 125 bits (138), Expect = 8e-24 Identities = 158/217 (73%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 162244 GAGTTGCTGGTATACTAGGTGGAGCACTTCTATCTGCTATTCACGGAGTCACAGTTGAAA 162303 ||||||||||| || | || | || | |||| |||||||| || | || || |||| Sbjct 218 GAGTTGCTGGTGTATTGGGGGCTGCTTTGCTATGCGCTATTCATGGTGCTACCGTAGAAA 159 Query 162304 ATACATTATACGAGGATGGAGAACAAGCAAACACCTTTAAGGCGTTTGATTCGACACAGG 162363 |||| |||| || ||||| || ||||| || || || ||| | | || || | Sbjct 158 ATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCTTTTAACCCAACTCAAG 99 Query 162364 AGGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGTATTG 162423 ||||| |||||||| ||||||||||| |||||||| ||||| || ||||| || ||| Sbjct 98 CCGAAGAAACTTATTCCATGGTCACTGCTAACCGCTTTTGGTCCCAAATCTTTGGGGTTG 39 Query 162424 CGTTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTT 162460 | ||||| || || || ||| | ||||| || ||||| Sbjct 38 CTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTT 2 >seq110764 Length=2751 Score = 122 bits (134), Expect = 1e-22 Identities = 91/107 (85%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 160716 CGTTCACTTCACTTCTTCCTGGCAGCATGGCCTGTAGTCGGAATCTGGTTCACTGCTCTT 160775 ||||| | ||||||||||| || || ||||||||||| || ||||||||||||||| | Sbjct 1540 CGTTCGTTACACTTCTTCCTAGCTGCTTGGCCTGTAGTGGGTATCTGGTTCACTGCTTTA 1599 Query 160776 GGTGTTAGCACCATGGCATTCAACCTCAACGGTTTCAACTTCAACCA 160822 ||| | | ||||||||| |||||||| ||||||||||| |||||||| Sbjct 1600 GGTATCAACACCATGGCTTTCAACCTAAACGGTTTCAATTTCAACCA 1646 >seq96029 Length=8464 Score = 93.3 bits (102), Expect = 5e-14 Identities = 210/308 (68%), Gaps = 7/308 (2%) Strand=Plus/Plus Query 161730 TTTGTTGGCTGGTCTGGACTTCTTCTTCTTCCCACTGCTTATCTTGCTATTGGCGGTTGG 161789 |||| |||||| |||| || | || || | ||| ||| ||||||| || |||||| Sbjct 1615 TTTGGAGGCTGGACTGGCCTATTACTCTTTACTTGTGCCTATTTTGCTATAGG-GGTTGG 1673 Query 161790 CTTACTGGCACAACTTTCGCAACGAGCTGGTATACCCATGGTCTCGCTAGTTCCTATCTT 161849 | | || |||||||| | ||| |||||||||||| | || ||||||||| | Sbjct 1674 TTCGCAGGTACAACTTTTGTAACTTCATGGTATACCCATAAATTAGCAAGTTCCTATTTG 1733 Query 161850 G-AGGGTGCAAACTTTCTT-ACAGCGTCAGTTAGCACTCCAGCTGACGCTATGGGTCATT 161907 | ||| || || |||||| ||| | ||||| | || ||| | | | | |||| Sbjct 1734 GAAGGCTGTAA--TTTCTTAACAACTGCAGTTTCTAGTCTTGCTAATAGTTTAGCGCATT 1791 Query 161908 CTCTTCTTCTT-CTCTGGGGTCCTGAGGCTCAAGGGGATTTCGTCCGCTGGGTCCAACTT 161966 || || || || || ||| ||||||| | ||||| ||||| | ||| ||| | Sbjct 1792 CT-TTATTGTTACTGTGGAGTCCTGAAGTACAAGGAGATTTTACTTGTTGGTGTCAATTG 1850 Query 161967 GGGGGACTCTGGAATTTTGTGGCACTCCATGGTGCCTTCGCCCTAATTGGATTCATGCTC 162026 ||||| || |||| ||| || || || ||||| | |||| ||||| || |||||| | Sbjct 1851 GGGGGTCTGTGGACTTTGGTTGCTCTGCATGGCACTTTCGGACTAATAGGTTTCATGTTA 1910 Query 162027 CGTCAGTT 162034 | ||| || Sbjct 1911 CATCAATT 1918 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 558650805356600