Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ocimum_20tenuiflorum_20[genbank_20GCA_5F001278415.1_202015-09-02] 121,993 sequences; 332,616,730 total letters Query= NC_026926.1 Length=192108 Score E Sequences producing significant alignments: (Bits) Value seq31467 154 2e-32 seq115592 149 8e-31 seq99465 134 2e-26 seq85463 125 9e-24 seq71831 120 4e-22 seq110764 96.9 4e-15 seq100051 84.2 3e-11 >seq31467 Length=18065 Score = 154 bits (170), Expect = 2e-32 Identities = 174/233 (75%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 181533 GGTGTCGCAGGTGTATTTGGTGGTTCACTGTTCAGTGCAATGCACGGTTCTTTGGTTACA 181592 || || || |||||||| || || || || |||||||| ||||| ||||| ||||| || Sbjct 5478 GGCGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACT 5419 Query 181593 TCTTCACTCGTCCGTGAGACGACTGAAACTGAGTCACAGAACTATGGTTACAAGTTCGGA 181652 ||| | || | || || || |||| ||| || || | ||||||| | ||| Sbjct 5418 TCTAGTTTGATCGGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATCCGGT 5359 Query 181653 CAAGAAGAAGAGACATACAACATCGTCGCCGCCCACGGTTACTTTGGTCGCTTGATCTTC 181712 ||||| ||||| || || || ||||| ||||| || ||||||||| | || ||||||||| Sbjct 5358 CAAGAGGAAGAAACTTATAATATCGTAGCCGCTCATGGTTACTTTAGACGATTGATCTTC 5299 Query 181713 CAATATGCTTCATTCAACAACTCACGTTCACTGCACTTCTTCCTCGCAGCATG 181765 ||||||||| ||||||||||| ||||| | |||||||| || || || || Sbjct 5298 CAATATGCTAGTTTCAACAACTCTCGTTCGTTACACTTCTTTCTAGCTGCTTG 5246 >seq115592 Length=218 Score = 149 bits (164), Expect = 8e-31 Identities = 163/217 (75%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 182917 GAGTTGCTGGTATACTGGGTGGAGCACTGCTCAGTGCTATCCATGGTGTCACAGTAGAGA 182976 ||||||||||| || |||| | || |||| | ||||| ||||||| || ||||| | Sbjct 218 GAGTTGCTGGTGTATTGGGGGCTGCTTTGCTATGCGCTATTCATGGTGCTACCGTAGAAA 159 Query 182977 ATACCTTGTATGAAGATGGAGAACAGGCAAACACATTTAAAGCGTTCGATTCCACTCAGG 183036 |||| || | ||||||||| || ||||| ||||| || || | | ||||| | Sbjct 158 ATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCTTTTAACCCAACTCAAG 99 Query 183037 AGGAGGAGACCTATTCGATGGTTACAGCGAATCGTTTTTGGTCACAAATCTTCGGGGTTG 183096 || || || ||||| ||||| || || || || |||||||| |||||||| ||||||| Sbjct 98 CCGAAGAAACTTATTCCATGGTCACTGCTAACCGCTTTTGGTCCCAAATCTTTGGGGTTG 39 Query 183097 CGTTTAGCAATAAGCGTTGGTTGCACTTCTTTATGTT 183133 | ||| |||||| |||||||| || ||||||||||| Sbjct 38 CTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTT 2 >seq99465 Length=4513 Score = 134 bits (148), Expect = 2e-26 Identities = 204/289 (71%), Gaps = 6/289 (2%) Strand=Plus/Plus Query 181422 GGTCAAGGTTCTTTCTCTGACGCAATGCCACTTGGCATCTCTGGTACATTCAACTACATG 181481 |||||||| ||| ||||| | ||||| | || || ||| |||| ||||||| |||| Sbjct 2967 GGTCAAGGAAGTTTTTCTGATGGTATGCCTCCAGGAATTTCTTGTACTTTCAACTTCATG 3026 Query 181482 CTTGTTTTCCAAGCAGAGCACAACATTCTGATGCATCCCTTCCACATGTTGGGTGTCGCA 181541 |||| ||| | || ||||| || ||||| |||||| | | |||| || || || Sbjct 3027 ATTGTATTCTAGGCTGAGCATAATATTCTTATGCATTCAT-----ATGTGAGGCGTAGCG 3081 Query 181542 GGTGTATTTGGTGGTTCACTGTTCAGTGCAATGCACGGTTCTTTGGTTACATCTTCACTC 181601 |||||||| | || || || |||||||| ||||| ||||| ||||| || ||| | Sbjct 3082 GGTGTATTCGACGGCTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACTTCTAGTTTG 3141 Query 181602 GTCCGTGAGACGACTGAAACTGAGTCACAGAACTATGGTTACAAGTTCGGACAAGAAGAA 181661 || | | || || |||| ||| | || | |||||||| ||||| || | | || Sbjct 3142 ATCAGGTAAACCACAGAAAATGAAACTGCTAATGAAGGTTACAAATTCGGTCAGGGA-AA 3200 Query 181662 GAGACATACAACATCGTCGCCGCCCACGGTTACTTTGGTCGCTTGATCT 181710 || | || || ||||| || || | ||||||||||| || ||||||| Sbjct 3201 GAAGCTTATAATATCGTAGCTGCATATGGTTACTTTGGCCGATTGATCT 3249 >seq85463 Length=6098 Score = 125 bits (138), Expect = 9e-24 Identities = 122/156 (78%), Gaps = 2/156 (1%) Strand=Plus/Plus Query 181686 CACGGTTACTTTGGTCGCTTGATCTTCCAATATGCTTCATTCAACAACTCACGTTCACTG 181745 || ||||||||||| || |||||||||||||||||| ||| ||||||| ||||| | Sbjct 4020 CATGGTTACTTTGGCCGATTGATCTTCCAATATGCTAGTTTCCACAACTCTCGTTCGTTA 4079 Query 181746 CACTTCTTCCTCGCAGCATGGCCTGTAGTTGGAATCTGGTTCACCGCACTGGGCGTAAGC 181805 |||||| |||| || || ||||||||||| || || |||||||| | || || | ||| Sbjct 4080 CACTTCGTCCTAGCTGCTTGGCCTGTAGTGGGTATTTGGTTCACTG--CTAGGTATCAGC 4137 Query 181806 ACCATGGCATTTAACCTCAATGGATTCAACTTCAAC 181841 |||||| || || || ||||| ||||| || ||| Sbjct 4138 GTCATGGCCTTCAATCTAAATGGTTTCAATTTTAAC 4173 >seq71831 Length=3823 Score = 120 bits (132), Expect = 4e-22 Identities = 200/288 (69%), Gaps = 1/288 (0%) Strand=Plus/Minus Query 181422 GGTCAAGGTTCTTTCTCTGACGCAATGCCACTTGGCATCTCTGGTACATTCAACTACATG 181481 |||||||| ||| | ||| | ||||| || || || ||| |||| ||||||| |||| Sbjct 956 GGTCAAGGAAGTTTTTTTGATGGTATGCCTCTAGGAATTTCTTGTACTTTCAACTTCATG 897 Query 181482 CTTGTTTTCCAAGCAGAGCACAACATTCTGATGCATCCCTTCCACATGTTGGGTGTCGCA 181541 |||| || | || ||||||| |||||| ||| | || || || ||||| | || || Sbjct 896 ATTGTATTTTAGGCTGAGCACA-CATTCTTATGTACCCATTTCATATGTTAAGCGTAGCT 838 Query 181542 GGTGTATTTGGTGGTTCACTGTTCAGTGCAATGCACGGTTCTTTGGTTACATCTTCACTC 181601 |||||| | || || || ||||||| ||||| ||||| |||| || ||| | Sbjct 837 AGTGTATACGACGGCTCCCTATTCAGTGTTATGCATGGTTCCTTGGCAACTTCTAGTTTG 778 Query 181602 GTCCGTGAGACGACTGAAACTGAGTCACAGAACTATGGTTACAAGTTCGGACAAGAAGAA 181661 || | | || || |||| ||| || || | || |||| || | ||||| || Sbjct 777 ATCAGGTAAACCACAGAAAATGAATCTGCTAATGAAGGATACAGATTTAGTCAAGAGAAA 718 Query 181662 GAGACATACAACATCGTCGCCGCCCACGGTTACTTTGGTCGCTTGATC 181709 || || || || |||| |||| || ||||||||||| || |||||| Sbjct 717 GAAACTTATAATATCGCATCCGCTCATGGTTACTTTGGCCGATTGATC 670 >seq110764 Length=2751 Score = 96.9 bits (106), Expect = 4e-15 Identities = 86/108 (80%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 181736 ACGTTCACTGCACTTCTTCCTCGCAGCATGGCCTGTAGTTGGAATCTGGTTCACCGCACT 181795 |||||| | ||||||||||| || || ||||||||||| || ||||||||||| || | Sbjct 1539 ACGTTCGTTACACTTCTTCCTAGCTGCTTGGCCTGTAGTGGGTATCTGGTTCACTGCTTT 1598 Query 181796 GGGCGTAAGCACCATGGCATTTAACCTCAATGGATTCAACTTCAACCA 181843 || | | ||||||||| || ||||| || || ||||| |||||||| Sbjct 1599 AGGTATCAACACCATGGCTTTCAACCTAAACGGTTTCAATTTCAACCA 1646 >seq100051 Length=9184 Score = 84.2 bits (92), Expect = 3e-11 Identities = 70/86 (81%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 181704 TTGATCTTCCAATATGCTTCATTCAACAACTCACGTTCACTGCACTTCTTCCTCGCAGCA 181763 ||||||||| |||||||| |||||||| || ||||| | ||||||||||| | || Sbjct 2493 TTGATCTTCTAATATGCTAGTTTCAACAATTCTCGTTCGTTACACTTCTTCCTAACTGCT 2434 Query 181764 TGGCCTGTAGTTGGAATCTGGTTCAC 181789 ||||||||| | || ||||||||||| Sbjct 2433 TGGCCTGTAATGGGTATCTGGTTCAC 2408 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613680361939040