Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ocimum_20tenuiflorum_20[genbank_20GCA_5F001278415.1_202015-09-02] 121,993 sequences; 332,616,730 total letters Query= NC_026927.1 Length=228143 Score E Sequences producing significant alignments: (Bits) Value seq115592 131 2e-25 seq31467 122 1e-22 seq85463 114 2e-20 seq110764 98.7 1e-15 seq46960 89.7 7e-13 seq99465 84.2 3e-11 >seq115592 Length=218 Score = 131 bits (144), Expect = 2e-25 Identities = 159/217 (73%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 176407 GAGTTGCTGGTATACTAGGTGGAGCACTACTATCTGCAATCCATGGCGTTACTGTTGAAA 176466 ||||||||||| || | || | || | |||| || || ||||| | ||| || |||| Sbjct 218 GAGTTGCTGGTGTATTGGGGGCTGCTTTGCTATGCGCTATTCATGGTGCTACCGTAGAAA 159 Query 176467 ATACCCTATATGAAGATGGAGAACAGAACAACACCTTCACTGCGTTCGATTCCACGCAGG 176526 |||| ||| ||||||||| || || || ||| ||| || | | || || | Sbjct 158 ATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCTTTTAACCCAACTCAAG 99 Query 176527 AGGAAGAGACCTATTCGATGGTTACTGCGAACCGCTTCTGGTCGCAAATCTTCGGGGTTG 176586 ||||| || ||||| ||||| ||||| |||||||| ||||| |||||||| ||||||| Sbjct 98 CCGAAGAAACTTATTCCATGGTCACTGCTAACCGCTTTTGGTCCCAAATCTTTGGGGTTG 39 Query 176587 CGTTTAGTAATAAGCGTTGGCTTCACTTCTTTATGTT 176623 | ||| ||||| |||||| | || ||||||||||| Sbjct 38 CTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTT 2 >seq31467 Length=18065 Score = 122 bits (134), Expect = 1e-22 Identities = 169/234 (72%), Gaps = 2/234 (1%) Strand=Plus/Minus Query 175020 GGAGTCGCAGGTGTCTTCGGTGGTTCATTGTTCTCAGCGATGCATGGTTCACTTGTTACC 175079 || || || ||||| ||||| || || | ||| || ||||||||||| |||| || | Sbjct 5478 GGCGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTC-CTTGGTAAC 5420 Query 175080 TCTTCACTTG-TCCGTGAGACAACTGAAACTGAGTCACAGAACTATGGTTACAAGTTCGG 175138 | | ||| || | || || || |||| ||| || || | ||||||| | ||| Sbjct 5419 TTCTAGTTTGATCGGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATCCGG 5360 Query 175139 CCAAGAAGAAGAGACCTATAACATCGTGGCAGCCCATGGCTACTTCGGTCGTTTGATCTT 175198 ||||| ||||| || ||||| ||||| || || ||||| ||||| | || |||||||| Sbjct 5359 TCAAGAGGAAGAAACTTATAATATCGTAGCCGCTCATGGTTACTTTAGACGATTGATCTT 5300 Query 175199 CCAATACGCTTCATTCAACAACTCACGCTCACTCCACTTCTTCTTAGCCGCATG 175252 |||||| ||| ||||||||||| || || | |||||||| |||| || || Sbjct 5299 CCAATATGCTAGTTTCAACAACTCTCGTTCGTTACACTTCTTTCTAGCTGCTTG 5246 >seq85463 Length=6098 Score = 114 bits (126), Expect = 2e-20 Identities = 173/245 (71%), Gaps = 11/245 (4%) Strand=Plus/Plus Query 175173 CATGGCTACTTCGGTCGTTTGATCTTCCAATACGCTTCATTCAACAACTCACGCTCACTC 175232 ||||| ||||| || || |||||||||||||| ||| ||| ||||||| || || | Sbjct 4020 CATGGTTACTTTGGCCGATTGATCTTCCAATATGCTAGTTTCCACAACTCTCGTTCGTTA 4079 Query 175233 CACTTCTTCTTAGCCGCATGGCCAGTTGTGGGTATCTGGTTCACCGCACTTGGTGTTTCC 175292 |||||| || |||| || ||||| || |||||||| |||||||| | || ||| | | Sbjct 4080 CACTTCGTCCTAGCTGCTTGGCCTGTAGTGGGTATTTGGTTCACTG--CTAGGTATCAGC 4137 Query 175293 ACAATGGCATTCAACCTCAATGGTTTCAACTTCAACCAGTCTGTTATCGACGGACAAGGT 175352 ||||| ||||| || ||||||||||| || ||| | || || | || | ||| || Sbjct 4138 GTCATGGCCTTCAATCTAAATGGTTTCAATTTTAACAAATCCGTAGTTGATAGTCAAAGT 4197 Query 175353 -AGAGTATTGAACACCTGGGCGGATGTTCTTAACAGAGCTGGTCTTGGGATGGAAGTAAT 175411 | ||| | |||| ||| | | ||| | ||| ||||| || ||||| || Sbjct 4198 CAAAGT--------CGTGGGTTGATATCATCAACCGTGCTAACCTTGGTATAGAAGTTAT 4249 Query 175412 GCATG 175416 ||||| Sbjct 4250 GCATG 4254 >seq110764 Length=2751 Score = 98.7 bits (108), Expect = 1e-15 Identities = 84/104 (81%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 175233 CACTTCTTCTTAGCCGCATGGCCAGTTGTGGGTATCTGGTTCACCGCACTTGGTGTTTCC 175292 ||||||||| |||| || ||||| || ||||||||||||||||| || | ||| | | Sbjct 1549 CACTTCTTCCTAGCTGCTTGGCCTGTAGTGGGTATCTGGTTCACTGCTTTAGGTATCAAC 1608 Query 175293 ACAATGGCATTCAACCTCAATGGTTTCAACTTCAACCAGTCTGT 175336 || ||||| |||||||| || |||||||| |||||||| | ||| Sbjct 1609 ACCATGGCTTTCAACCTAAACGGTTTCAATTTCAACCAATTTGT 1652 >seq46960 Length=374 Score = 89.7 bits (98), Expect = 7e-13 Identities = 115/156 (74%), Gaps = 2/156 (1%) Strand=Plus/Plus Query 174495 AATCGTCTTTACGTCGGTTGGTTCGGTGTTCTAATGATTCCTACATTGTTAGCCGCAACT 174554 |||| ||||||| | | |||||||||||| | ||||| ||||| | || |||||||| Sbjct 4 AATCATCTTTACATTAGATGGTTCGGTGTTTTGATGATCCCTACCTCATTGACCGCAACT 63 Query 174555 GTATGT-TTCATTATCGCTTTCGTGGGTGCTCCCCCAGTGGACATCGACGGAATCCGTGA 174613 | ||| || ||||| | ||| | | |||||| ||||| || || || || || ||||| Sbjct 64 -TCTGTATTTATTATTACCTTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGA 122 Query 174614 ACCAGTAGCTGGTTCACTCATGTATGGAAACAACAT 174649 || || |||| | || | ||||| |||||||| Sbjct 123 ACTTGTTTCTGGATATCTACTTTATGGGAACAACAT 158 >seq99465 Length=4513 Score = 84.2 bits (92), Expect = 3e-11 Identities = 195/290 (67%), Gaps = 8/290 (3%) Strand=Plus/Plus Query 174909 GGTCAAGGTTCATTCTCAGACGCGATGCCCTTGGGTATCTCTGGAACATTCAACTACATG 174968 |||||||| || || || | ||||| || || ||| | || ||||||| |||| Sbjct 2967 GGTCAAGGAAGTTTTTCTGATGGTATGCCTCCAGGAATTTCTTGTACTTTCAACTTCATG 3026 Query 174969 TTGGTCTTCCAAGCAGAACATAACATCTTGATGCACCCCTTCCACATGTTGGGAGTCGCA 175028 | || ||| | || || ||||| || | ||||| | || |||| || || || Sbjct 3027 ATTGTATTCTAGGCTGAGCATAATATTCTTATGCA-----TTCATATGTGAGGCGTAGCG 3081 Query 175029 GGTGTCTTCGGTGGTTCATTGTTCTCAGCGATGCATGGTTCACTTGTTACCTCTTCACTT 175088 ||||| |||| || || | ||| || ||||||||||| |||| || || | || Sbjct 3082 GGTGTATTCGACGGCTCCCTATTCAGTGCTATGCATGGTTC-CTTGGTAACTTCTAGTTT 3140 Query 175089 G-TCCGTGAGACAACTGAAACTGAGTCACAGAACTATGGTTACAAGTTCGGCCAAGAAGA 175147 | || | | || || |||| ||| | || | |||||||| ||||| || | | | Sbjct 3141 GATCAGGTAAACCACAGAAAATGAAACTGCTAATGAAGGTTACAAATTCGGTCAGGGA-A 3199 Query 175148 AGAGACCTATAACATCGTGGCAGCCCATGGCTACTTCGGTCGTTTGATCT 175197 ||| | ||||| ||||| || || |||| ||||| || || ||||||| Sbjct 3200 AGAAGCTTATAATATCGTAGCTGCATATGGTTACTTTGGCCGATTGATCT 3249 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 728816521228840