Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ocimum_20tenuiflorum_20[genbank_20GCA_5F001278415.1_202015-09-02] 121,993 sequences; 332,616,730 total letters Query= NC_026928.1 Length=189418 Score E Sequences producing significant alignments: (Bits) Value seq31467 145 9e-30 seq115592 140 4e-28 seq85463 123 3e-23 seq110764 96.9 4e-15 seq100051 84.2 3e-11 >seq31467 Length=18065 Score = 145 bits (160), Expect = 9e-30 Identities = 172/233 (74%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 178401 GGTGTCGCAGGTGTATTCGGTGGTTCACTGTTCAGTGCAATGCACGGTTCTTTGGTTACA 178460 || || || ||||||||||| || || || |||||||| ||||| ||||| ||||| || Sbjct 5478 GGCGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACT 5419 Query 178461 TCTTCACTCGTTCGTGAAACGACTGAAACAGAATCACAGAACTATGGTTATAAGTTCGGA 178520 ||| | | | ||||| || |||| ||||| || | ||||| | | ||| Sbjct 5418 TCTAGTTTGATCGGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATCCGGT 5359 Query 178521 CAAGAAGAAGAGACATACAACATCGTTGCAGCACATGGCTACTTCGGTCGTTTGATCTTC 178580 ||||| ||||| || || || ||||| || || ||||| ||||| | || ||||||||| Sbjct 5358 CAAGAGGAAGAAACTTATAATATCGTAGCCGCTCATGGTTACTTTAGACGATTGATCTTC 5299 Query 178581 CAATATGCTTCATTCAACAACTCACGTTCACTGCACTTCTTCCTCGCAGCATG 178633 ||||||||| ||||||||||| ||||| | |||||||| || || || || Sbjct 5298 CAATATGCTAGTTTCAACAACTCTCGTTCGTTACACTTCTTTCTAGCTGCTTG 5246 >seq115592 Length=218 Score = 140 bits (154), Expect = 4e-28 Identities = 161/217 (74%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 179779 GAGTTGCTGGTATACTAGGAGGAGCACTGCTCAGTGCTATCCATGGAGTTACTGTAGAGA 179838 ||||||||||| || | || | || |||| | ||||| ||||| | ||| ||||| | Sbjct 218 GAGTTGCTGGTGTATTGGGGGCTGCTTTGCTATGCGCTATTCATGGTGCTACCGTAGAAA 159 Query 179839 ATACATTGTATGAAGATGGAGAACAAGCAAATACCTTTAAGGCGTTTGATTCGACACAGG 179898 |||| || | ||||||||| || |||||||| || || ||| | | || || | Sbjct 158 ATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCTTTTAACCCAACTCAAG 99 Query 179899 AAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGTATTG 179958 ||||| |||||||| ||||||||||| |||||||| ||||| || ||||| || ||| Sbjct 98 CCGAAGAAACTTATTCCATGGTCACTGCTAACCGCTTTTGGTCCCAAATCTTTGGGGTTG 39 Query 179959 CATTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTT 179995 | ||||| || || || ||| | ||||| || ||||| Sbjct 38 CTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTT 2 >seq85463 Length=6098 Score = 123 bits (136), Expect = 3e-23 Identities = 125/162 (77%), Gaps = 2/162 (1%) Strand=Plus/Plus Query 178554 CATGGCTACTTCGGTCGTTTGATCTTCCAATATGCTTCATTCAACAACTCACGTTCACTG 178613 ||||| ||||| || || |||||||||||||||||| ||| ||||||| ||||| | Sbjct 4020 CATGGTTACTTTGGCCGATTGATCTTCCAATATGCTAGTTTCCACAACTCTCGTTCGTTA 4079 Query 178614 CACTTCTTCCTCGCAGCATGGCCTGTAGTTGGAATCTGGTTCACCGCACTGGGCGTAAGC 178673 |||||| |||| || || ||||||||||| || || |||||||| | || || | ||| Sbjct 4080 CACTTCGTCCTAGCTGCTTGGCCTGTAGTGGGTATTTGGTTCACTG--CTAGGTATCAGC 4137 Query 178674 ACCATGGCATTTAACCTCAATGGATTCAACTTCAACCAGTCC 178715 |||||| || || || ||||| ||||| || ||| | ||| Sbjct 4138 GTCATGGCCTTCAATCTAAATGGTTTCAATTTTAACAAATCC 4179 >seq110764 Length=2751 Score = 96.9 bits (106), Expect = 4e-15 Identities = 86/108 (80%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 178604 ACGTTCACTGCACTTCTTCCTCGCAGCATGGCCTGTAGTTGGAATCTGGTTCACCGCACT 178663 |||||| | ||||||||||| || || ||||||||||| || ||||||||||| || | Sbjct 1539 ACGTTCGTTACACTTCTTCCTAGCTGCTTGGCCTGTAGTGGGTATCTGGTTCACTGCTTT 1598 Query 178664 GGGCGTAAGCACCATGGCATTTAACCTCAATGGATTCAACTTCAACCA 178711 || | | ||||||||| || ||||| || || ||||| |||||||| Sbjct 1599 AGGTATCAACACCATGGCTTTCAACCTAAACGGTTTCAATTTCAACCA 1646 >seq100051 Length=9184 Score = 84.2 bits (92), Expect = 3e-11 Identities = 70/86 (81%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 178572 TTGATCTTCCAATATGCTTCATTCAACAACTCACGTTCACTGCACTTCTTCCTCGCAGCA 178631 ||||||||| |||||||| |||||||| || ||||| | ||||||||||| | || Sbjct 2493 TTGATCTTCTAATATGCTAGTTTCAACAATTCTCGTTCGTTACACTTCTTCCTAACTGCT 2434 Query 178632 TGGCCTGTAGTTGGAATCTGGTTCAC 178657 ||||||||| | || ||||||||||| Sbjct 2433 TGGCCTGTAATGGGTATCTGGTTCAC 2408 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 605085488385840