Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ocimum_20tenuiflorum_20[genbank_20GCA_5F001278415.1_202015-09-02] 121,993 sequences; 332,616,730 total letters Query= NC_027130.1 Length=172688 Score E Sequences producing significant alignments: (Bits) Value seq31467 150 2e-31 seq85463 145 8e-30 seq99465 134 2e-26 seq115592 125 8e-24 seq110764 105 7e-18 seq96029 98.7 1e-15 seq110392 84.2 2e-11 seq100051 84.2 2e-11 >seq31467 Length=18065 Score = 150 bits (166), Expect = 2e-31 Identities = 176/235 (75%), Gaps = 2/235 (1%) Strand=Plus/Minus Query 158930 CGGTGTTGCTGGGGTATTCGGTGGATCTCTTTTCTCTGCTATGCATGGAAGTCTCGTTAC 158989 ||| || ||||| |||||||| || || || ||| |||||||||||| | || || Sbjct 5479 CGGCGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAAC 5420 Query 158990 TTCCTCACTCGTTCGTG-AAACGACTGAAACAGAGTCACAGAACTATGGTTACAAGTTCG 159048 ||| | | | ||| | |||| || |||| || || || | ||||||| | || Sbjct 5419 TTC-TAGTTTGATCGGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATCCG 5361 Query 159049 GACAAGAAGAAGAAACATATAATATCGTCGCAGCCCATGGTTACTTCGGTCGTTTGATCT 159108 | ||||| |||||||| ||||||||||| || || ||||||||||| | || ||||||| Sbjct 5360 GTCAAGAGGAAGAAACTTATAATATCGTAGCCGCTCATGGTTACTTTAGACGATTGATCT 5301 Query 159109 TCCAATACGCTTCATTCAACAACTCCCGTTCCTTGCACTTCTTCCTTGCTGCATG 159163 ||||||| ||| ||||||||||| ||||| || |||||||| || ||||| || Sbjct 5300 TCCAATATGCTAGTTTCAACAACTCTCGTTCGTTACACTTCTTTCTAGCTGCTTG 5246 >seq85463 Length=6098 Score = 145 bits (160), Expect = 8e-30 Identities = 181/246 (74%), Gaps = 13/246 (5%) Strand=Plus/Plus Query 159084 CATGGTTACTTCGGTCGTTTGATCTTCCAATACGCTTCATTCAACAACTCCCGTTCCTTG 159143 ||||||||||| || || |||||||||||||| ||| ||| ||||||| ||||| || Sbjct 4020 CATGGTTACTTTGGCCGATTGATCTTCCAATATGCTAGTTTCCACAACTCTCGTTCGTTA 4079 Query 159144 CACTTCTTCCTTGCTGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGTGTCA 159203 |||||| |||| ||||| |||||||| || || || |||||||| | || | || ||| Sbjct 4080 CACTTCGTCCTAGCTGCTTGGCCTGTAGTGGGTATTTGGTTCACTG--CTAG--GTATCA 4135 Query 159204 AC--CATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGG 159261 | |||||| ||||| || || |||||||| || ||| | ||| | ||||| |||| Sbjct 4136 GCGTCATGGCCTTCAATCTAAATGGTTTCAATTTTAACAAATCCGTAGTTGATAGTCAAA 4195 Query 159262 GTCGTGTGTTGAACACCTGGGCAGATGTACTGAACCGTGCAGGTCTGGGTATGGAAGTTA 159321 ||| || | |||| ||| | | |||||||| || ||||| ||||||| Sbjct 4196 GTC-------AAAGTCGTGGGTTGATATCATCAACCGTGCTAACCTTGGTATAGAAGTTA 4248 Query 159322 TGCATG 159327 |||||| Sbjct 4249 TGCATG 4254 >seq99465 Length=4513 Score = 134 bits (148), Expect = 2e-26 Identities = 206/290 (71%), Gaps = 8/290 (3%) Strand=Plus/Plus Query 158820 GGTCAAGGTTCTTTCTCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATG 158879 |||||||| ||| || |||| |||||||| || || ||| ||||||| |||| |||| Sbjct 2967 GGTCAAGGAAGTTTTTCTGATGGTATGCCTCCAGGAATTTCTTGTACTTTCAACTTCATG 3026 Query 158880 CTTGTATTCCAAGCAGAACACAACATCCTTATGCACCCGTTCCATATGCTCGGTGTTGCT 158939 |||||||| | || || || || || |||||||| | |||||| || || || Sbjct 3027 ATTGTATTCTAGGCTGAGCATAATATTCTTATGCA-----TTCATATGTGAGGCGTAGCG 3081 Query 158940 GGGGTATTCGGTGGATCTCTTTTCTCTGCTATGCATGGAAGTCTCGTTACTTCCTCACTC 158999 || ||||||| || || || ||| |||||||||||| | || |||| || | Sbjct 3082 GGTGTATTCGACGGCTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACTT-CTAGTTT 3140 Query 159000 GTTC-GTGAAACGACTGAAACAGAGTCACAGAACTATGGTTACAAGTTCGGACAAGAAGA 159058 | || | |||| || |||| || | || | |||||||| ||||| || | | | Sbjct 3141 GATCAGGTAAACCACAGAAAATGAAACTGCTAATGAAGGTTACAAATTCGGTCAGGGA-A 3199 Query 159059 AGAAACATATAATATCGTCGCAGCCCATGGTTACTTCGGTCGTTTGATCT 159108 |||| | ||||||||||| || || |||||||||| || || ||||||| Sbjct 3200 AGAAGCTTATAATATCGTAGCTGCATATGGTTACTTTGGCCGATTGATCT 3249 >seq115592 Length=218 Score = 125 bits (138), Expect = 8e-24 Identities = 158/217 (73%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 160455 GAGTTGCTGGTATACTAGGAGGAGCACTGCTCAGTGCCATCCATGGCGTTACTGTAGAGA 160514 ||||||||||| || | || | || |||| | || || ||||| | ||| ||||| | Sbjct 218 GAGTTGCTGGTGTATTGGGGGCTGCTTTGCTATGCGCTATTCATGGTGCTACCGTAGAAA 159 Query 160515 ACACACTGTATGAAGATGGAGAACAAGCAAATACCTTTAAGGCGTTTGATTCGACACAGG 160574 | || | | ||||||||| || |||||||| || || ||| | | || || | Sbjct 158 ATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCTTTTAACCCAACTCAAG 99 Query 160575 AAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGTATTG 160634 ||||| |||||||| ||||||||||| |||||||| ||||| || ||||| || ||| Sbjct 98 CCGAAGAAACTTATTCCATGGTCACTGCTAACCGCTTTTGGTCCCAAATCTTTGGGGTTG 39 Query 160635 CGTTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTT 160671 | ||||| || || || ||| | ||||| || ||||| Sbjct 38 CTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTT 2 >seq110764 Length=2751 Score = 105 bits (116), Expect = 7e-18 Identities = 90/109 (83%), Gaps = 4/109 (4%) Strand=Plus/Plus Query 159135 CGTTCCTTGCACTTCTTCCTTGCTGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTT 159194 ||||| || ||||||||||| ||||| |||||||| || || ||||||||||| | ||| Sbjct 1540 CGTTCGTTACACTTCTTCCTAGCTGCTTGGCCTGTAGTGGGTATCTGGTTCACTG--CTT 1597 Query 159195 GGCGTGTCA--ACCATGGCATTCAACCTGAACGGTTTCAACTTCAACCA 159241 || ||| |||||||| |||||||| ||||||||||| |||||||| Sbjct 1598 TAGGTATCAACACCATGGCTTTCAACCTAAACGGTTTCAATTTCAACCA 1646 >seq96029 Length=8464 Score = 98.7 bits (108), Expect = 1e-15 Identities = 211/308 (69%), Gaps = 7/308 (2%) Strand=Plus/Plus Query 159941 TTTGTTGGCTGGTCTGGACTTCTTCTTCTTCCCACTGCTTATCTTGCTATTGGCGGTTGG 160000 |||| |||||| |||| || | || || | ||| ||| ||||||| || |||||| Sbjct 1615 TTTGGAGGCTGGACTGGCCTATTACTCTTTACTTGTGCCTATTTTGCTATAGG-GGTTGG 1673 Query 160001 CTTACTGGAACAACTTTCGCAACGAGCTGGTATACCCATGGACTCGCTAGTTCCTATCTT 160060 | | || |||||||| | ||| |||||||||||| | | || ||||||||| | Sbjct 1674 TTCGCAGGTACAACTTTTGTAACTTCATGGTATACCCATAAATTAGCAAGTTCCTATTTG 1733 Query 160061 G-AGGGTGCAAACTTTCTT-ACAGCGTCAGTTAGCACTCCAGCTGACGCTATGGGTCATT 160118 | ||| || || |||||| ||| | ||||| | || ||| | | | | |||| Sbjct 1734 GAAGGCTGTAA--TTTCTTAACAACTGCAGTTTCTAGTCTTGCTAATAGTTTAGCGCATT 1791 Query 160119 CTCTTCTTCTT-CTCTGGGGTCCTGAGGCTCAAGGGGATTTCGTCAGGTGGATCCAACTT 160177 || || || || || ||| ||||||| | ||||| ||||| | ||| ||| | Sbjct 1792 CT-TTATTGTTACTGTGGAGTCCTGAAGTACAAGGAGATTTTACTTGTTGGTGTCAATTG 1850 Query 160178 GGGGGACTCTGGAATTTTGTGGCACTCCATGGTGCCTTCGCCCTAATTGGATTCATGCTC 160237 ||||| || |||| ||| || || || ||||| | |||| ||||| || |||||| | Sbjct 1851 GGGGGTCTGTGGACTTTGGTTGCTCTGCATGGCACTTTCGGACTAATAGGTTTCATGTTA 1910 Query 160238 CGTCAGTT 160245 | ||| || Sbjct 1911 CATCAATT 1918 >seq110392 Length=2942 Score = 84.2 bits (92), Expect = 2e-11 Identities = 172/248 (69%), Gaps = 7/248 (3%) Strand=Plus/Minus Query 159899 TTTGACATACTCGACGACTGGCTTAAACGGGATCGTTTCGTTTTTGTTGGCTGGTCTGGA 159958 ||||| || | || |||||| | | ||| | |||||||||||| | |||| |||| Sbjct 548 TTTGATATTATGGATGACTGGTTACGAAGGGGCCATTTCGTTTTTGTAGCCTGGCCTGGC 489 Query 159959 CTTCTTCTTCTTCCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGAACAACTTTC 160018 || | || ||| ||| ||| ||| | | || |||||| | || | ||||| || Sbjct 488 CTATTGCTCTCTCCTTGTGCCTATTTTG-TGTAGGGGGTTGGTTCACAAGTACAACCTTT 430 Query 160019 GCAACGAGCTGGTATACCCATGGACTCGCTAGTTCCTATCTTG-AGGGTGCAAACTTTCT 160077 | ||| ||||||||||||||| | || ||||||||| | | ||| || || ||||| Sbjct 429 GTAACTTCATGGTATACCCATGGATTGGCGAGTTCCTATTTGGAAGGCTGTAA--TTTCT 372 Query 160078 T-ACAGCGTCAGTTAGCACTCCAGCTGACGCTATGGGTCATTCTCTTCTTCTT-CTCTGG 160135 | ||| | ||||| ||||| ||| | | | | |||||| || || || || ||| Sbjct 371 TAACAACCGCAGTTTCTACTCCTGCTAATAGTTTAGTGCATTCT-TTATTGTTACTGTGG 313 Query 160136 GGTCCTGA 160143 ||||||| Sbjct 312 AGTCCTGA 305 >seq100051 Length=9184 Score = 84.2 bits (92), Expect = 2e-11 Identities = 70/86 (81%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 159102 TTGATCTTCCAATACGCTTCATTCAACAACTCCCGTTCCTTGCACTTCTTCCTTGCTGCA 159161 ||||||||| |||| ||| |||||||| || ||||| || ||||||||||| |||| Sbjct 2493 TTGATCTTCTAATATGCTAGTTTCAACAATTCTCGTTCGTTACACTTCTTCCTAACTGCT 2434 Query 159162 TGGCCTGTTGTCGGCATCTGGTTCAC 159187 |||||||| | || ||||||||||| Sbjct 2433 TGGCCTGTAATGGGTATCTGGTTCAC 2408 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 551631126101440