Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ocimum_20tenuiflorum_20[genbank_20GCA_5F001278415.1_202015-09-02] 121,993 sequences; 332,616,730 total letters Query= NC_027132.1 Length=190768 Score E Sequences producing significant alignments: (Bits) Value seq115592 125 9e-24 seq31467 123 3e-23 seq85463 118 1e-21 seq110764 107 2e-18 >seq115592 Length=218 Score = 125 bits (138), Expect = 9e-24 Identities = 158/217 (73%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 180577 GAGTTGCTGGTATACTAGGTGGAGCATTGCTATCAGCAATCCATGGCGTAACTGTGGAGA 180636 ||||||||||| || | || | || ||||||| || || ||||| | || || || | Sbjct 218 GAGTTGCTGGTGTATTGGGGGCTGCTTTGCTATGCGCTATTCATGGTGCTACCGTAGAAA 159 Query 180637 ACACACTGTATGAAGATGGAGAACAAGCAAACACCTTTAAGGCATTTGATTCAACGCAAG 180696 | || | | ||||||||| || ||||| || || || ||| | |||| |||| Sbjct 158 ATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCTTTTAACCCAACTCAAG 99 Query 180697 AGGAGGAAACTTACTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGTATTG 180756 || |||||||| || ||||||||||| |||||||| ||||| || ||||| || ||| Sbjct 98 CCGAAGAAACTTATTCCATGGTCACTGCTAACCGCTTTTGGTCCCAAATCTTTGGGGTTG 39 Query 180757 CATTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTT 180793 | ||||| || || || ||| | ||||| || ||||| Sbjct 38 CTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTT 2 >seq31467 Length=18065 Score = 123 bits (136), Expect = 3e-23 Identities = 170/235 (72%), Gaps = 2/235 (1%) Strand=Plus/Minus Query 179412 CGGTGTTGCTGGGGTATTCGGTGGATCTCTTTTCTCTGCTATGCACGGAAGTCTCGTTAC 179471 ||| || ||||| |||||||| || || || ||| ||||||||| || | || || Sbjct 5479 CGGCGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAAC 5420 Query 179472 TTCCTCGCTTGTTCGTG-AAACAACTGAGACAGAGTCACAGAACTATGGTTATAAGTTCG 179530 ||| | | ||| ||| | |||| || || | || || || | ||||| | | || Sbjct 5419 TTC-TAGTTTGATCGGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATCCG 5361 Query 179531 GACAAGAAGAAGAGACCTATAACATCGTCGCAGCACATGGCTACTTCGGTCGTTTGATCT 179590 | ||||| ||||| || ||||| ||||| || || ||||| ||||| | || ||||||| Sbjct 5360 GTCAAGAGGAAGAAACTTATAATATCGTAGCCGCTCATGGTTACTTTAGACGATTGATCT 5301 Query 179591 TCCAATATGCATCCTTTAACAACTCACGCTCTTTGCACTTCTTCCTTGCTGCGTG 179645 |||||||||| || |||||||| || || || |||||||| || ||||| || Sbjct 5300 TCCAATATGCTAGTTTCAACAACTCTCGTTCGTTACACTTCTTTCTAGCTGCTTG 5246 >seq85463 Length=6098 Score = 118 bits (130), Expect = 1e-21 Identities = 174/246 (71%), Gaps = 13/246 (5%) Strand=Plus/Plus Query 179566 CATGGCTACTTCGGTCGTTTGATCTTCCAATATGCATCCTTTAACAACTCACGCTCTTTG 179625 ||||| ||||| || || ||||||||||||||||| || ||||||| || || || Sbjct 4020 CATGGTTACTTTGGCCGATTGATCTTCCAATATGCTAGTTTCCACAACTCTCGTTCGTTA 4079 Query 179626 CACTTCTTCCTTGCTGCGTGGCCGGTTGTCGGCATCTGGTTCACTGCTCTTGGCGTGTCA 179685 |||||| |||| ||||| ||||| || || || || |||||||||||| || ||| Sbjct 4080 CACTTCGTCCTAGCTGCTTGGCCTGTAGTGGGTATTTGGTTCACTGCT----AGGTATCA 4135 Query 179686 AC--CATGGCGTTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCCTTGACGGTCAAG 179743 | |||||| ||||| || || |||||||| || ||| | ||| | |||| ||||| Sbjct 4136 GCGTCATGGCCTTCAATCTAAATGGTTTCAATTTTAACAAATCCGTAGTTGATAGTCAAA 4195 Query 179744 GACGTGTCCTTAACACATGGGCGGACGTATTGAACCGTGCAGGTTTGGGTATGGAAGTTA 179803 | | || | |||| || | | |||||||| | ||||| ||||||| Sbjct 4196 GTC-------AAAGTCGTGGGTTGATATCATCAACCGTGCTAACCTTGGTATAGAAGTTA 4248 Query 179804 TGCATG 179809 |||||| Sbjct 4249 TGCATG 4254 >seq110764 Length=2751 Score = 107 bits (118), Expect = 2e-18 Identities = 91/110 (83%), Gaps = 4/110 (4%) Strand=Plus/Plus Query 179616 ACGCTCTTTGCACTTCTTCCTTGCTGCGTGGCCGGTTGTCGGCATCTGGTTCACTGCTCT 179675 ||| || || ||||||||||| ||||| ||||| || || || ||||||||||||||| | Sbjct 1539 ACGTTCGTTACACTTCTTCCTAGCTGCTTGGCCTGTAGTGGGTATCTGGTTCACTGCTTT 1598 Query 179676 TGGCGTGTCA--ACCATGGCGTTCAACCTCAACGGTTTCAACTTCAACCA 179723 | || ||| |||||||| |||||||| ||||||||||| |||||||| Sbjct 1599 AG--GTATCAACACCATGGCTTTCAACCTAAACGGTTTCAATTTCAACCA 1646 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 609398900763840