Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ocimum_20tenuiflorum_20[genbank_20GCA_5F001278415.1_202015-09-02] 121,993 sequences; 332,616,730 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq21024 122 1e-22 seq103549 109 8e-19 >seq21024 Length=7623 Score = 122 bits (134), Expect = 1e-22 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 69991 GTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTG 70050 ||||| |||||||| | |||||||| || || ||||||||| | || | |||| Sbjct 2794 GTTCCAGCATTAAAAAGAGTAGGAGAAGCATGTGTGAACCATCGCTGTGACAAAAGATGA 2735 Query 70051 TATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAAC 70110 ||||||| || || || || ||||| || || ||||| | || |||||||||||| Sbjct 2734 TATGTTTGTATCGCAGAATCAATATCATCCTTGTGGATTCCAACAGCAACACGCATCAAC 2675 Query 70111 ATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAGA 70170 || ||||| |||| |||||| || || || || ||||| || || |||| ||| Sbjct 2674 ATGTGCTGTGGTCTTTCTACAACCTTGCCTTTGATCTTTAACAGATAGGACCTTTCAAGA 2615 Query 70171 GTTTTAAACCCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAAT 70217 |||||||| |||||| | | || ||||||||| || || || || Sbjct 2614 GTTTTAAAACCAAAAAAATCATAGTCAAAGTCTCTGTCATATATGAT 2568 Score = 118 bits (130), Expect = 1e-21 Identities = 161/222 (73%), Gaps = 2/222 (1%) Strand=Plus/Minus Query 69751 CCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCA 69810 || ||||| || | |||| ||||||| ||| | |||| ||||| |||| ||| ||| Sbjct 3167 CCGCCCTGGTCCACATATCGAGCAGTGTCATTGAAAACTCGAAGCATTGGAACAATGCCA 3108 Query 69811 TTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGAT 69870 || ||| |||||||||||| |||||||||||| | || || |||||| || ||| Sbjct 3107 TTTGATAATCCATTTGTTCCACGTATATAACTTCCTGTGGCACGGATATTATGAACAGAC 3048 Query 69871 AGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATA 69930 | ||| || ||||| || ||| |||| |||||| || | ||| || ||||| Sbjct 3047 ACACCAATACCTCCAGCTGATTTGCTAATTACAGCACATTCCTTAAGTGTATCGTATATG 2988 Query 69931 CCCTCTATGCTATCATCTATCATG-TTAAGAAGAAAACAGCT 69971 ||||| || |||||||| ||||| || ||| |||||||| Sbjct 2987 CCCTCAATACTATCATCCTTCATGCATATCAAG-AAACAGCT 2947 >seq103549 Length=14649 Score = 109 bits (120), Expect = 8e-19 Identities = 159/222 (72%), Gaps = 2/222 (1%) Strand=Plus/Minus Query 69751 CCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCA 69810 || ||||| || | |||| ||||||| ||| | |||| ||||| |||| || ||| Sbjct 7883 CCACCCTGGTCAACATATCGAGCAGTGTCATTGAAAACTCGAAGCATTGGAACAACGCCA 7824 Query 69811 TTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGAT 69870 || || |||||||||||| |||||||||||| | || ||||||||| | || Sbjct 7823 TTTGACAATCCATTTGTTCCACGTATATAACTTCCTGTAGCACGAATATTATGGACGGAC 7764 Query 69871 AGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATA 69930 | ||| || ||||| || |||| || | |||||| || | ||| |||||||| Sbjct 7763 ACACCAATCCCTCCAGCTGATTTACTAATAACAGCACATTCCTTAAGTGTATCATATATG 7704 Query 69931 CCCTCTATGCTATCATCTATCATG-TTAAGAAGAAAACAGCT 69971 ||||| || |||||||| ||||| || ||| |||||||| Sbjct 7703 CCCTCAATACTATCATCCTTCATGCATATCAAG-AAACAGCT 7663 Score = 89.7 bits (98), Expect = 7e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 69991 GTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTG 70050 || || |||||||| | |||||||| || |||||||||||| || || || |||| Sbjct 7486 GTCCCAGCATTAAAAAGGGTAGGAGAAGCATGAGTGAACCATCGTTGCGACAGAAGATGA 7427 Query 70051 TATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAAC 70110 ||||||| || | || || ||||| || ||| ||||| | | || ||||| ||| Sbjct 7426 TATGTTTTTATCACAGAATCAATATCATCCTTATGGATTCCAACAGAAACTCGCATTAAC 7367 Query 70111 ATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAGA 70170 || || || || | ||| || || | | || ||||| || || |||| || Sbjct 7366 ATGTGTTGTGGCCTTTCAACAACCTTGCCTTGAACCTTTAACAGATAAGACCTTTCAAGC 7307 Query 70171 GTTTTAAACCCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAAT 70217 |||||||| |||||||| | || |||||||| || || || || Sbjct 7306 GTTTTAAAACCAAAATAATCATAGTCGAAGTCTCTGTCATATATGAT 7260 Score = 87.8 bits (96), Expect = 2e-12 Identities = 92/120 (77%), Gaps = 1/120 (1%) Strand=Plus/Minus Query 69516 TTCGAATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACACATCAATGA 69575 ||| ||||| || |||||| |||| |||||||||| ||||||||||| | || ||| Sbjct 8373 TTCAAATTCTTCACCCCAACAATCAGCCAATCCAGGGGCCTCATTTGGACAGAACAGTGA 8314 Query 69576 CCACACATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATAAA 69635 ||| ||| | || ||||| || |||||| ||||| || ||||||||||| ||||| Sbjct 8313 CCATTGTCCATTAGACTGAACTCTTTGCATAAAGAGATCAGGTATCCAAAGAGC-ATAAA 8255 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 685861324184520