Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ocimum_20tenuiflorum_20[genbank_20GCA_5F001278415.1_202015-09-02] 121,993 sequences; 332,616,730 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq50788 109 7e-19 seq103549 95.1 2e-14 >seq50788 Length=838 Score = 109 bits (120), Expect = 7e-19 Identities = 229/336 (68%), Gaps = 8/336 (2%) Strand=Plus/Plus Query 11483 TCAAGGATATCCACGCGATTAGTGGCCGCAATAACCACAATGCCAGTCTCATTGTCAAAG 11542 || || ||||| | || ||||| || |||| ||| | |||||||| | |||||| Sbjct 486 TCGAGAATATCTGCACGGTTAGTCGCTGCAACAACAATTATGCCAGTATTTCCTTCAAAG 545 Query 11543 CCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGCATA 11602 |||||||| || || | | || || | || || || || ||||| ||| || || Sbjct 546 CCATCCATTTCTGTCAAGAGCTGGTTCAAGGTCTGCTCCCTTTCATCGTTTCCTC-CAC- 603 Query 11603 CCA--CCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATACATG 11660 | | || | | | ||| || ||||||||||||||||||| || ||||| || | Sbjct 604 CGATTCCGGTTCCTCTTTGACGCCCAACCGCATCAATCTCATCAACAAACACAATGCAGG 663 Query 11661 GTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAACAA 11720 | |||||| ||| | | || || || || || | | |||||| || ||||||| Sbjct 664 GAGCATTTTCCTTGGCTTTCTTGAAAAGGTCACGGACTCGTGAGGCACCAACTCCAACAA 723 Query 11721 ACATCTCCACAAAGTTTGCGGCAGAGCACTG--GATGAATGGGACATTTGATTCACCCGC 11778 ||||||| ||||| | | | || | || || |||||| ||| || |||||| || Sbjct 724 ACATCTCAACAAACTCCGAACCTGA--AATGGAGAAGAATGGAACACCTGCTTCACCAGC 781 Query 11779 GATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGG 11814 || ||| ||| || |||||||| || ||||| || Sbjct 782 AATCGCTTTGGCTAGCAGGGTCTTCCCAGTACCGGG 817 >seq103549 Length=14649 Score = 95.1 bits (104), Expect = 2e-14 Identities = 111/150 (74%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 111020 GAATCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAGACCTTGAACACCCAAACCA 111079 ||||||||||| || ||| ||||| || ||||||||||| ||||| | || Sbjct 9243 GAATCAAATGCCATGCCTAGCAAGATAAAGGTGTCAGCGAGACCTTGTACACCAATTCCT 9184 Query 111080 ATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCAACGGGATAAAAATTTCTGTCA 111139 || ||||| || |||||||||||| || ||||| ||||| ||||||||||| ||| Sbjct 9183 ATTGGTCTATGACGCATATTAGACCTTTTTGCAGTTTCAACAGGATAAAAATTGACATCA 9124 Query 111140 ATGACTCGGTTTAGATTTTTGGTAACAATC 111169 || | | ||| || ||| | ||||||||| Sbjct 9123 ATTATTTTGTTAAGGTTTGTAGTAACAATC 9094 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627074306152800