Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ocimum_20tenuiflorum_20[genbank_20GCA_5F001278415.1_202015-09-02] 121,993 sequences; 332,616,730 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq53764 100 3e-16 seq103549 95.1 1e-14 >seq53764 Length=14654 Score = 100 bits (110), Expect = 3e-16 Identities = 228/335 (68%), Gaps = 6/335 (2%) Strand=Plus/Plus Query 9557 TCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGT-TTCATTATCAAA 9615 ||||| |||||| | || || || || || | |||| ||||| || ||| | ||||| Sbjct 10859 TCAAGAATATCAGCACGGTTAGTAGCTGCAACCACAATTATACCAGTATTCCCT-TCAAA 10917 Query 9616 ACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCAT 9675 ||||||||| |||||||| || || || | || ||||||| ||||||||| || Sbjct 10918 ACCATCCATTTCTGTCAACAGCTGATTTAGTGTCTGTTCCCTTTCATCATTTCCTCCACC 10977 Query 9676 ACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCATGG 9735 | ||| | | | ||| || || |||||||| ||||||| || | || ||||| Sbjct 10978 AATACCTGTTCCTCTTTGACGCCCAACAGCATCAATTTCATCAACAAATATAATACATGG 11037 Query 9736 TTGATTTTCGCGAG-CGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAA 9794 | |||||| | | ||| ||| ||||| || || || || || ||||| || | Sbjct 11038 TGCATTTTCCTTTGCCTTCTTGAAA-AGATCACGGACCCGAGAAGCACCAACACCGACGA 11096 Query 9795 ACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCGCA 9853 ||||||| ||||| | | | ||| || | || ||||| ||| | |||||| ||| Sbjct 11097 ACATCTCAACAAACTCGGAACCTGAA-ATAGAGAAAAAGGGAACACCTGCTTCACCAGCA 11155 Query 9854 ATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9888 || || ||| || | ||||| || || || || Sbjct 11156 ATAGCCTTGGCTAGCAAGGTCTTCCCAGTGCCAGG 11190 >seq103549 Length=14649 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 104138 AGAGACTACGACTTTGGTTATTTTGGTCTCAAAACCCTTGAGAAGAGCTATCT-TCAACG 104196 ||||||| ||||| || |||||||||| | ||||| ||||| | | ||||| | || | Sbjct 7272 AGAGACTTCGACTATGATTATTTTGGTTTTAAAACGCTTGAAAGGTCTTATCTGTTAAAG 7331 Query 104197 GCTCGATGGTGTCTTGATGGAAACCCCACAGTACATGTTCATGCGCGTGGCCATCGGTAT 104256 | || | | ||| || ||| ||||| ||||||| ||||| || | | || || Sbjct 7332 GTTCAAGGCAAGGTTGTTG-AAAGGCCACAACACATGTTAATGCGAGTTTCTGTTGGAAT 7390 Query 104257 TCATGGGGAAGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGTT 104316 ||| ||| || ||||||||||| | | ||||| | |||| ||| | ||| Sbjct 7391 CCATAAGGATGATATTGATTCTGTGATAAAAACATATCATCTTCTGTCGCAACGATGGTT 7450 Query 104317 CATTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCCCAA 104365 || ||| || | || ||||| || |||||||| |||||||| || ||| Sbjct 7451 CACTCATGCTTCTCCTACCCTTTTTAATGCTGGGACACCAAGGCCACAA 7499 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 582371378315320