Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ocimum_20tenuiflorum_20[genbank_20GCA_5F001278415.1_202015-09-02] 121,993 sequences; 332,616,730 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq109031 122 8e-23 seq111813 118 9e-22 seq117762 109 5e-19 seq99159 100 2e-16 seq70367 100 2e-16 seq95628 95.1 1e-14 >seq109031 Length=8095 Score = 122 bits (134), Expect = 8e-23 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || ||| ||||||||||| | || || || |||||||| || Sbjct 77 ATGCAGATCTTTGTCAAGACTTTGACCGGCAAGACGATCACGCTGGAAGTGGAGAGCTCG 136 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| |||| || | || || || || || ||||| || || || ||||| || || Sbjct 137 GACACGATCGATAATGTGAAGGCTAAGATACAGGACAAGGAGGGAATCCCACCGGACCAG 196 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | ||||||||||| | ||||| || ||| | | || |||||| Sbjct 197 CAGAGGCTGATTTTTGCCGGCAAACAGCTAGAAGATGGTAGGACTTTGGCGGACTACAAC 256 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||||||||||||||| || ||| |||| | | |||| ||||| || Sbjct 257 ATTCAAAAGGAGTCGACTTTGCATCTGGTGCTTAGGCTGCGTGGTGGAAT 306 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || |||||||| || ||| | || ||| | || ||||| || Sbjct 305 ATGCAGATCTTTGTGAAGACTCTGACGGGGAAGACGATCACTTTGGAGGTGGAGAGCTCG 364 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | || || ||| ||||||||||| |||||||| || || || || Sbjct 365 GACACCATTGATAATGTGAAGGCAAAGATTCAAGACAAGGAAGGCATTCCGCCGGACCAG 424 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | ||||| | || || || || | || || | |||| || | ||||| || Sbjct 425 CAGAGGTTAATCTTTGCTGGGAAGCAGCTCGAGGATGGAAGGACCCTTGCTGATTATAAT 484 Query 27168 ATTCAAAAGGAGTCGAC 27184 ||||| ||||||||||| Sbjct 485 ATTCAGAAGGAGTCGAC 501 >seq111813 Length=4153 Score = 118 bits (130), Expect = 9e-22 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || | || ||| |||| || ||| | || ||| | || ||||| ||| Sbjct 1327 ATGCAGATTTTCATCAAGACTTTGACTGGAAAGACCATCACTTTGGAGGTGGAGAGCTCC 1268 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | || ||| || ||||| ||||| |||||||| || || || || Sbjct 1267 GACACAATTGACAATGTGAAAGCCAAGATTCAGGACAAGGAAGGCATTCCTCCGGACCAG 1208 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| | |||| || || || || | ||||| | | ||| | |||| |||||| Sbjct 1207 CAGCGGCTGATATTTGCGGGTAAGCAGCTCGAAGATGGCTGGACGCTAGCCGACTACAAC 1148 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || |||||||||||| | ||| |||| |||||||| | || || || Sbjct 1147 ATCCAGAAGGAGTCGACCCTTCATCTGGTGCTGCGTTTGAGAGGAGGGAT 1098 Score = 102 bits (112), Expect = 7e-17 Identities = 162/231 (70%), Gaps = 1/231 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || |||||||| | |||||| | || || |||||||| ||| || Sbjct 1556 ATGCAGATTTTCGTGAAAACTCTTGCTGGCAAGACGATAACCCTTGAAGTTGAAAGCTCA 1497 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | ||||| ||||| |||| |||||||| || || ||||| || Sbjct 1496 GACACTATCGACAACGTCAAGGCCAAAATCTAAGATAAAGAAGGGATCCCCCCCGAGCAG 1437 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCC-GATTACAA 27166 || || || | | || || || ||| ||||||| | || | | ||||||| Sbjct 1436 CAACGATTTTTCTTTGCTGGGAAGCAACTGGAAGATGGCAGAACACTAGGCAGATTACAG 1377 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||||||||||| || ||| | ||| | || ||||| | || ||||| || Sbjct 1376 CATTCAAAAGGAATCCACCCTTCATCTCGTGCTGCGTCTTCGTGGTGGAAT 1326 >seq117762 Length=309 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || || || || ||||||||| | || ||||||||||| || || Sbjct 254 ATGCAAATCTTCGTCAAGACCCTTACCGGCAAGACCATCACTCTTGAAGTCGAGAGCTCG 195 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| ||||||| | ||||| || || || ||||| || ||||| || || || || Sbjct 194 GACACGATTGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAG 135 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | || || | |||||||| || | || || | ||| | | ||||||||| Sbjct 134 CAGAGGTTGATCTTTGCCGGCAAGCAGCTCGAGGATGGACGCACCTTGGCTGATTACAAC 75 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || ||||| || ||| | |||||||| | ||| | || ||||| || Sbjct 74 ATCCAGAAGGAATCCACCCTCCATTTGGTCCTCCGTCTCCGTGGTGGTAT 25 >seq99159 Length=5808 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || || || || ||||| | || || || || || || || Sbjct 1805 ATGCAGATCTTTGTCAAGACCCTCACGGGCAAAACCATAACCCTGGAGGTTGAGAGTTCG 1746 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | || ||| || ||||||||||| ||||| ||||| || || || Sbjct 1745 GACACAATTGATAATGTGAAAGCTAAGATTCAAGACAAGGAAGGGATACCCCCGGACCAG 1686 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | || || | || ||||| || | || || | || | | || ||||| Sbjct 1685 CAGAGGTTGATTTTTGCTGGCAAGCAGCTCGAGGATGGACGCACTCTAGCGGACTACAAT 1626 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||| ||||||||||| | ||| |||| ||||| ||||| || || || Sbjct 1625 ATTCAGAAGGAGTCGACTCTTCATCTGGTGTTGCGGTTGCGAGGAGGGAT 1576 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||||||||| || || ||||| || ||| | || || | || ||||| || Sbjct 1577 ATGCAGATATTTGTGAAGACGCTGACTGGGAAGACGATCACATTGGAGGTGGAGAGTTCG 1518 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | || || || || || || || || || || ||||| || ||| Sbjct 1517 GACACAATCGACAATGTGAAGGCGAAGATACAGGATAAGGAGGGTATCCCACCGGACCAA 1458 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | |||| || || || || |||||||| | ||| || | ||||||||| Sbjct 1457 CAGAGGCTGATATTTGCTGGTAAGCAGTTGGAAGATGGAAGGACTCTTGCAGATTACAAC 1398 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 || || || ||||||||| | || | || | || |||| ||||| Sbjct 1397 ATCCAGAAAGAGTCGACCCTGCACCTTGTCCTCCGCCTGCGTGGTGG 1351 Score = 86.0 bits (94), Expect = 5e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 |||||| || ||||| ||||| | || || ||| | ||||||||||| || || || Sbjct 2034 CATGCAAATCTTTGTTAAAACCTTAACTGGAAAGACCATTACTCTTGAGGTTGAGAGCTC 1975 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | || || | ||||| || || ||||| || || ||||| || || ||||| Sbjct 1974 CGATACCATAGACAATGTCAAGGCCAAGATCCAAGATAAGGAGGGCATTCCTCCAGATCA 1915 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||| | || || | ||| ||||| || | || || | || || |||| ||||| Sbjct 1914 GCAGAGGTTGATTTTCGCTGGCAAGCAGCTCGATGATGGACGAACACTTGCCGACTACAA 1855 Query 27167 CATTCAAAAGGA 27178 ||| |||||||| Sbjct 1854 CATCCAAAAGGA 1843 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 |||||| || ||||| || || | || |||||| | || || || |||||||| || Sbjct 2262 CATGCAAATCTTTGTTAAGACCTTAACGGGCAAGACAATCACGCTCGAAGTGGAGAGTTC 2203 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 |||| | || || | || || || ||||| ||||| || ||||| || || || || Sbjct 2202 CGACACCATCGACAATGTTAAGGCCAAGATTCAGGACAAGGAGGGCATTCCCCCAGACCA 2143 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||| | || || | || || || || | ||||| | || || | |||||||| Sbjct 2142 GCAGAGATTGATCTTTGCTGGAAAGCAGCTCGAAGATGGCCGCACTCTTGCTGATTACAA 2083 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||||| || ||||| || | || |||| | || | || |||||||| Sbjct 2082 CATTCAGAAAGAGTCTACTCTCCACCTGGTCCTTCGCCTCCGTGGTGGCAT 2032 >seq70367 Length=2979 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || || || || || ||| | || || ||||| || || ||| Sbjct 58 ATGCAGATCTTTGTCAAGACCCTTACAGGGAAGACCATCACCCTTGAGGTCGAGAGCTCC 117 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | || || || || || ||||| |||||||| ||||| ||||| Sbjct 118 GACACTATTGACAACGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCACCGGATCAG 177 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | ||||| || || | || || | ||| | | || |||||| Sbjct 178 CAGAGGCTTATCTTTGCCGGAAAGCAGCTTGAGGATGGCCGCACCTTGGCGGACTACAAC 237 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||| || ||||||||||| || ||||| || | | || ||||| || Sbjct 238 ATTCAGAAAGAGTCGACCTTGCACTTGGTCCTGAGGCTCCGTGGTGGTAT 287 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || || || ||||| || | || || || || || ||| ||| Sbjct 286 ATGCAGATTTTTGTGAAGACCCTTACCGGGAAAACCATCACCCTAGAGGTTGAAAGCTCC 345 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | || || || ||||| ||||| || || || ||||| ||||| Sbjct 346 GACACAATTGACAATGTAAAGGCCAAGATTCAGGACAAGGAGGGTATCCCACCGGATCAG 405 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | || || | || || || || ||||||| | ||| | | ||||||||| Sbjct 406 CAGAGGTTGATCTTTGCTGGGAAGCAGCTGGAAGATGGCCGTACCTTGGCTGATTACAAC 465 Query 27168 ATTCAAAAGGAGTCGACC 27185 || || |||||||| ||| Sbjct 466 ATCCAGAAGGAGTCCACC 483 >seq95628 Length=1400 Score = 95.1 bits (104), Expect = 1e-14 Identities = 161/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || || || |||||||| ||| | || || | || || ||| || Sbjct 7 ATGCAAATCTTCGTCAAGACACTGACCGGGAAGACCATCACCTTGGAGGTTGAAAGCTCT 66 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| |||| || | || || || ||||| ||||| || || || || || ||||| Sbjct 67 GACACGATCGACAATGTGAAGGCGAAGATTCAGGACAAGGAGGGGATTCCCCCGGATCAG 126 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTT-CCGATTACAA 27166 ||| | ||||| | ||||| || || | || || || || |||| |||||||||| Sbjct 127 CAGAGGTTAATCTTTGCCGGGAAGCAGCTCGAGGATGGT-CGTACGTTGGCCGATTACAA 185 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||| || |||||||| ||| | || ||||| || | || | || ||||| Sbjct 186 CATCCAGAAGGAGTCCACCCTGCACTTGGTGCTGAGGTTAAGAGGAGGCAT 236 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434255187495360