Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ocimum_20tenuiflorum_20[genbank_20GCA_5F001278415.1_202015-09-02] 121,993 sequences; 332,616,730 total letters Query= NC_028663.1 Length=188632 Score E Sequences producing significant alignments: (Bits) Value seq99465 145 9e-30 seq71831 127 2e-24 >seq99465 Length=4513 Score = 145 bits (160), Expect = 9e-30 Identities = 219/310 (71%), Gaps = 6/310 (2%) Strand=Plus/Plus Query 176533 GTTTTCCTCGTCTATCCATTCGGTCAAGGATCTTTCTCTGATGGTATGCCTCTTGGCATT 176592 |||||| | |||| | | | ||||||||| ||| |||||||||||||||| || ||| Sbjct 2946 GTTTTCTTGATCTACCAAATTGGTCAAGGAAGTTTTTCTGATGGTATGCCTCCAGGAATT 3005 Query 176593 TCAGGTACATTCAACTTTATGTTTGTATTCCAAGCAGAGCACAACATTCTAATGCACCCA 176652 || |||| |||||||| ||| |||||||| | || ||||| || ||||| ||||| Sbjct 3006 TCTTGTACTTTCAACTTCATGATTGTATTCTAGGCTGAGCATAATATTCTTATGCA---- 3061 Query 176653 TTCCATATGCTTGGAGTAGCAGGTGTGTTTGGTGGATCTCTTTTCTCAGCAATGCACGGA 176712 | |||||| || ||||| ||||| || | || || || ||| || ||||| || Sbjct 3062 -TTCATATGTGAGGCGTAGCGGGTGTATTCGACGGCTCCCTATTCAGTGCTATGCATGGT 3120 Query 176713 AGTCTTGTTACTTCTTCACTTGTTAGAGAGACAACCGAAAACGAATCACAAAACTACGGT 176772 | || |||||| | | || | || || ||||| ||| | || | ||| Sbjct 3121 TCCTTGGTAACTTCTAGTTTGATCAGGTAAACCACAGAAAATGAAACTGCTAATGAAGGT 3180 Query 176773 TACAAATTCGGACAAGAAGAAGAGACATACAACATTGTAGCTGCACACGGTTACTTTGGT 176832 ||||||||||| || | | |||| | || || || ||||||||| | ||||||||||| Sbjct 3181 TACAAATTCGGTCAGGGA-AAGAAGCTTATAATATCGTAGCTGCATATGGTTACTTTGGC 3239 Query 176833 CGTCTTATCT 176842 || | |||| Sbjct 3240 CGATTGATCT 3249 >seq71831 Length=3823 Score = 127 bits (140), Expect = 2e-24 Identities = 210/302 (70%), Gaps = 1/302 (0%) Strand=Plus/Minus Query 176533 GTTTTCCTCGTCTATCCATTCGGTCAAGGATCTTTCTCTGATGGTATGCCTCTTGGCATT 176592 |||||| | | || ||| | ||||||||| ||| | ||||||||||||||| || ||| Sbjct 977 GTTTTCTTGATTTACCCAATTGGTCAAGGAAGTTTTTTTGATGGTATGCCTCTAGGAATT 918 Query 176593 TCAGGTACATTCAACTTTATGTTTGTATTCCAAGCAGAGCACAACATTCTAATGCACCCA 176652 || |||| |||||||| ||| ||||||| | || |||||| ||||||| ||| ||||| Sbjct 917 TCTTGTACTTTCAACTTCATGATTGTATTTTAGGCTGAGCAC-ACATTCTTATGTACCCA 859 Query 176653 TTCCATATGCTTGGAGTAGCAGGTGTGTTTGGTGGATCTCTTTTCTCAGCAATGCACGGA 176712 || |||||| | | ||||| |||| | | || || || ||| | ||||| || Sbjct 858 TTTCATATGTTAAGCGTAGCTAGTGTATACGACGGCTCCCTATTCAGTGTTATGCATGGT 799 Query 176713 AGTCTTGTTACTTCTTCACTTGTTAGAGAGACAACCGAAAACGAATCACAAAACTACGGT 176772 | | |||||| | | || | || || ||||| ||||| || | || Sbjct 798 TCCTTGGCAACTTCTAGTTTGATCAGGTAAACCACAGAAAATGAATCTGCTAATGAAGGA 739 Query 176773 TACAAATTCGGACAAGAAGAAGAGACATACAACATTGTAGCTGCACACGGTTACTTTGGT 176832 |||| ||| | ||||| |||| || || || || | | | || || ||||||||||| Sbjct 738 TACAGATTTAGTCAAGAGAAAGAAACTTATAATATCGCATCCGCTCATGGTTACTTTGGC 679 Query 176833 CG 176834 || Sbjct 678 CG 677 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 602574123845760