Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ocimum_20tenuiflorum_20[genbank_20GCA_5F001278415.1_202015-09-02] 121,993 sequences; 332,616,730 total letters Query= NC_028955.1 Length=197361 Score E Sequences producing significant alignments: (Bits) Value seq6994 188 9e-43 seq55338 154 2e-32 seq99465 147 3e-30 seq115809 138 1e-27 seq71831 127 3e-24 seq85463 125 9e-24 seq31467 113 6e-20 seq81183 93.3 5e-14 seq106760 84.2 3e-11 seq31546 82.4 1e-10 >seq6994 Length=7142 Score = 188 bits (208), Expect = 9e-43 Identities = 396/587 (67%), Gaps = 19/587 (3%) Strand=Plus/Plus Query 183644 GATATAGCACATCATCACCTAGCAATAGCAGTTATGTTTATCATTGCAGGTCATATGTAT 183703 ||||| |||||||||| | || | | || ||||| | | | |||| |||||| Sbjct 1536 GATATTACACATCATCATTTCGCGAATGATATTCTGTTTCTGGTAGT-GGTCCCATGTAT 1594 Query 183704 CGCACAAACTGGGGTATTGGTCAATCAATGAAAGAGATATTAGATGGTCAGAATGGT--- 183760 | || |||||||| |||||||| ||||||| || ||||| | ||| || ||| Sbjct 1595 AGAACCAACTGGGGCATTGGTCACAGGCTGAAAGATATTTTAGAAGCTCATAAAGGTCCA 1654 Query 183761 TTCCCA---CAGGGTGTCACACACAGAGGATTATATGAATTTCTAGCAGAATCAAGACAT 183817 || || ||||| |||| | | ||||||| | ||| | ||| | ||| Sbjct 1655 TTTACAGGCCAGGGC------CACAAAAGCCTATATGAGATCCTAAAAACTTCATGGCAT 1708 Query 183818 GCACAACTATCACTGAATCTGGCAATGCTAGGATCTATCAGTATCATAGTTTCACATCAT 183877 || ||| |||| || || | || || |||| ||| | | || || || | || ||| Sbjct 1709 GCTCAATTATCTCTTAACTTAGCTGTGTTAGGCTCTTTAACCATTATTGTAGCTCACCAT 1768 Query 183878 ATGTATGCAATGCCACCTTATCCATATCTTGGTATTGAATATCCAACAGTAGTAGGATTA 183937 |||||| | ||||| |||||||||||| | | || ||| ||| ||| | ||| Sbjct 1769 ATGTATTCCATGCCCCCTTATCCATATGTAGCTACTGATTATGGTACACAACCGTCATTG 1828 Query 183938 TTCACCCATCATATGTGGATAGGTGGTTTTCTTATTGTGGGTGCATCAGCACATGCTTCA 183997 ||||| |||| || ||||| ||||| ||||| || || ||||| | || ||||| | Sbjct 1829 TTCACATATCACATATGGATTGGTGGATTTCTCATAGTTGGTGCTGCTGCGCATGCAACC 1888 Query 183998 ATTGCTATGATAAGAGACTATAATC---CTGTTCAACATATGGGAAATGTATTAGATAGA 184054 ||| |||| ||||||||||| ||| || || | | || | || |||||||| | Sbjct 1889 ATTTTTATGGTAAGAGACTATGATCTAACTACTCGATACATCG---ATTTATTAGATTGT 1945 Query 184055 ATACTTAAATCTAGAGATGCAATCATCAGTCACTTGAACTGGGTATGCATCTTTTTAGGT 184114 | |||| | | ||||||||||| | | ||||| ||| || ||| | || Sbjct 1946 GTCCTTAGACATCATGATGCAATCATATCATATCTCAACTGTAAATGTATATTTATGGGC 2005 Query 184115 TTTCATAGTTTTGGTCTTTATATTCACAATGATATTATGAGAGCATTGGGTAGACCTAAT 184174 ||||||||||||||| | | |||||| || |||| ||||| || || || ||| | Sbjct 2006 TTTCATAGTTTTGGTTTGTGTATTCATAACGATACCATGAGTGCCTTAGGGCTTCCTCAA 2065 Query 184175 GATCTATTCAGTGATACAGCAATACAATTACAACCTGTATTTGCACA 184221 ||| | || ||||| || || ||||||||||| || ||||| || Sbjct 2066 GATATGTTTTTAGATACTGCTATTCAATTACAACCCGTTTTTGCCCA 2112 Score = 168 bits (186), Expect = 8e-37 Identities = 431/649 (66%), Gaps = 48/649 (7%) Strand=Plus/Plus Query 184334 GACTTTATGATACATCACATACACGCTTTCCAGATTCATGTTTGTGTATTAATTCTTCTC 184393 || ||| || ||||||| || || || | ||||||||| |||| || || || Sbjct 2255 GATTTTTTGGTACATCATATCCATGCCGTTATGATTCATGTCAAAGTATAGATACTCCTG 2314 Query 184394 AAGGGTGTTTTATACTCTAGAAACTCACAATTAATACCAGATAAGAGTAAGTTAGGATTC 184453 | |||||| ||| ||| | | ||| | || ||||||||||| || || | | | || Sbjct 2315 ATAGGTGTTCTATTTTCTCGTAGCTCTCGGTTGATACCAGATAA-AGCAAATCATGGTTT 2373 Query 184454 AGATTC-CCTTGTGATGGTCCTGGTAGAGGAGGCACTTGTCAGGTATCAGGATGGGATCA 184512 ||| ||||||||||| ||||| ||||| || || | |||| | |||| || Sbjct 2374 TCATTTTCCTTGTGATGGGCCTGGAAGAGGGGGTACATA----GTATTGGCTAGGGACCA 2429 Query 184513 TGTATTCCTTGGTTTATTCTGGATGTATAATTGCATCTCTATAGTAATCTTCCACTTTAG 184572 ||| ||| | || | ||||||||||| |||| || | ||||||| ||||| || || Sbjct 2430 TGTCTTCTTAGGACTTTTCTGGATGTACAATTCTATTTTGGTAGTAATATTCCATTTCAG 2489 Query 184573 TTGGAGAATGCA---AGATGTATGGGG----------------------------TCTAT 184601 |||| |||||| |||||| || || | ||| Sbjct 2490 CTGGAAAATGCAGTTAGATGTTTGAGGCAGTATAAGTGATCAAGGGGTAGTAACTTATAT 2549 Query 184602 CA--GGAGGTAACTTTGCTCAGAGTTCAATTACAATCAATGGATGGTTGAGAGACTTCTT 184659 || ||||| ||||| || ||| | ||||| || ||||| ||| | | ||||| Sbjct 2550 CACGGGAGGAAACTTCATGCAAAGTCCTATTACTATTAATGGGTGGCTCCATTATTTCTT 2609 Query 184660 ATGGTCACAGTCAAGTCAAGTTCTCAATAGTTATGGA-CAAGAC-ATCAGCATGTATGGT 184717 |||| |||| || | || | | |||||| | | ||| |||| |||| Sbjct 2610 ATGGGCACACGCATCCTAGGTAATTCAGTCTTATGGTTCTTCATTATCTGCAT--ATGGC 2667 Query 184718 TTGCTATTTCTT-GGAGCACATTTTGTATGGGCATTCAGTTTGATGTTCCTATGGAGTGG 184776 || | |||||| || || |||||| ||||||| || ||||| ||||| |||| | || Sbjct 2668 TTTTT-TTTCTTAGGTGCTCATTTTATATGGGCTTTTAGTTTAATGTTTCTATTCAACGG 2726 Query 184777 TAGAGGA-TACTGGCAAGAGTTGATAGAGTCTATTGCTTGGGCACATAACAAATTAAAAC 184835 | | || || |||||||| | || || || |||| |||||| ||||| ||||||||| Sbjct 2727 -ACATGACTATTGGCAAGAACTTATTGAATCCATTGTTTGGGCTCATAATAAATTAAAAT 2785 Query 184836 TTGCACCTACCATTCAACCAAGAGCAATGTCAATTACACAAGGACGTGCTGTTGGAGTTG 184895 |||| || || | ||| || ||||| || ||| ||||||||||||||| ||||| Sbjct 2786 TTGCTCCAACTACTCAGCCGAGAGCCTTGAGCATTGTACAAGGACGTGCTGTAGGAGTAA 2845 Query 184896 CACACTTCTTACTTGGAGGTATTGCCACAACATGGGCATTCTTCTTTGC 184944 | || | | | | || || ||||||| ||||| || ||||||| || Sbjct 2846 CCCATTACCTTATGGGTGGAATTGCCATAACATCGG-TGTCTTCTTAGC 2893 >seq55338 Length=4731 Score = 154 bits (170), Expect = 2e-32 Identities = 184/247 (74%), Gaps = 2/247 (1%) Strand=Plus/Plus Query 182484 TAATGTCTCACGCCGTTAAAATATATGATACTTGCATTGGATGCACACAATGTGTGAAGG 182543 ||||| | || | || || || |||||||| || || ||||| || |||||||| || Sbjct 2231 TAATGCCACATTCAGTAAAGATTTATGATACATGTATAGGATGTACCCAATGTGTTCGGG 2290 Query 182544 CTTGTCCATTGGATGTATTAGAAATGGTTCCTTGGGATGGGTGCAAAGCAAAGCAAATTG 182603 | || || ||||||||||||||| | ||||||||||| || ||| | || ||||| Sbjct 2291 CATGCCCCACCGATGTATTAGAAATGATACCTTGGGATGGATGTAAAACTAAACAAATAA 2350 Query 182604 CTTCCTCACCTAGAACTGAGGATTGTGTAGGATGTAAGAGATGTGAAACAGCATGTCCTA 182663 |||| | || || | || || ||||| || |||||||| |||||| | || ||||| | Sbjct 2351 CTTCTGCCCCAAGGATCGAAGACTGTGTTGGTTGTAAGAGGTGTGAATCCGCTTGTCCAA 2410 Query 182664 CAGACTTTTTAAGTATTCGTGTTTACTTGGGTGCA-GAAACCACAAGAAGCATGGGTCTA 182722 |||| ||||| ||| ||| ||||| || | ||| ||||| || | || ||||||||| Sbjct 2411 CAGATTTTTTGAGTGTTCTAGTTTATTTATG-GCATGAAACAACTCGTAGTATGGGTCTA 2469 Query 182723 GCATATT 182729 || |||| Sbjct 2470 GCTTATT 2476 >seq99465 Length=4513 Score = 147 bits (162), Expect = 3e-30 Identities = 219/308 (71%), Gaps = 7/308 (2%) Strand=Plus/Plus Query 190088 TTCCTTG-TATACCCATTTGGTCAGGGTTCATTCTCTGATGGTATGCCTTTAGGTATCTC 190146 || |||| | |||| | ||||||| || || ||||||||||||||| ||| || || Sbjct 2948 TTTCTTGATCTACCAAATTGGTCAAGGAAGTTTTTCTGATGGTATGCCTCCAGGAATTTC 3007 Query 190147 AGGTACATTCAACTTCATGTTTGTATTCCAAGCAGAACATAATATCCTTATGCACCCATT 190206 |||| |||||||||||| |||||||| | || || |||||||| |||||||| | Sbjct 3008 TTGTACTTTCAACTTCATGATTGTATTCTAGGCTGAGCATAATATTCTTATGCA-----T 3062 Query 190207 CCATATGGCAGGTGTAGCAGGTATGTTTGGTGGAGCATTATTCTCTGCAATGCATGGTTC 190266 |||||| ||| ||||| ||| | || | || | ||||| ||| ||||||||||| Sbjct 3063 TCATATGTGAGGCGTAGCGGGTGTATTCGACGGCTCCCTATTCAGTGCTATGCATGGTTC 3122 Query 190267 ACTTGTAACATCTTCTCTAATCAGAGAAACAACTGGTTTAGAGTCACAGAACTATGGTTA 190326 | ||||| ||| | | ||||| |||| || | || | || | ||||| Sbjct 3123 CTTGGTAACTTCTAGTTTGATCAGGTAAACCACAGAAAATGAAACTGCTAATGAAGGTTA 3182 Query 190327 CAAGTTTGGACAAGAAGAAGAAACATACAACATAGTAGCTGCTCATGGTTACTTTGGTAG 190386 ||| || || || | | ||||| | || || || |||||||| ||||||||||||| | Sbjct 3183 CAAATTCGGTCAGGGA-AAGAAGCTTATAATATCGTAGCTGCATATGGTTACTTTGGCCG 3241 Query 190387 ACTTATCT 190394 | | |||| Sbjct 3242 ATTGATCT 3249 >seq115809 Length=223 Score = 138 bits (152), Expect = 1e-27 Identities = 159/214 (74%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 186533 GTTCATCATGCTATTGCACTTGGATTACATACTACAACTTTAATCCTAGTCAAGGGTGCA 186592 || |||||||||||||| || || |||||||| || || || ||| |||| || ||||| Sbjct 223 GTCCATCATGCTATTGCTCTGGGTTTACATACAACTACATTGATCTTAGTAAAAGGTGCT 164 Query 186593 TTAGATGCTAGAGGTTCAAAACTCATACCAGATAAGAAAGATTTAGGATATTCATTCCCT 186652 |||||||| | ||||| || | || |||||||| || ||||| || ||| || || Sbjct 163 TTAGATGCACGTGGTTCCAAGTTAATGCCAGATAAAAAGGATTTCGGTTATAGTTTTCCA 104 Query 186653 TGTGATGGTCCAGGCAGAGGTGGTACTTGTGATAGTTCTGGTTGGGATGCTTTCTATCTC 186712 |||||||| || || |||| || |||||||||| ||| | ||||| || || ||| | Sbjct 103 TGTGATGGCCCTGGGCGAGGGGGCACTTGTGATATTTCGGCATGGGACGCATTTTATTTA 44 Query 186713 TCTGTGTTCTGGGCATTCAATACAATAGCATGGG 186746 | || || ||| || ||||| || | ||||| Sbjct 43 GCAGTTTTTTGGATGTTAAATACTATTGGATGGG 10 >seq71831 Length=3823 Score = 127 bits (140), Expect = 3e-24 Identities = 208/297 (70%), Gaps = 2/297 (1%) Strand=Plus/Minus Query 190088 TTCCTTG-TATACCCATTTGGTCAGGGTTCATTCTCTGATGGTATGCCTTTAGGTATCTC 190146 || |||| | |||||| ||||||| || || | ||||||||||||| |||| || || Sbjct 975 TTTCTTGATTTACCCAATTGGTCAAGGAAGTTTTTTTGATGGTATGCCTCTAGGAATTTC 916 Query 190147 AGGTACATTCAACTTCATGTTTGTATTCCAAGCAGAACATAATATCCTTATGCACCCATT 190206 |||| |||||||||||| ||||||| | || || || | || |||||| ||||||| Sbjct 915 TTGTACTTTCAACTTCATGATTGTATTTTAGGCTGAGCA-CACATTCTTATGTACCCATT 857 Query 190207 CCATATGGCAGGTGTAGCAGGTATGTTTGGTGGAGCATTATTCTCTGCAATGCATGGTTC 190266 |||||| | | ||||| || | | | || | ||||| || ||||||||||| Sbjct 856 TCATATGTTAAGCGTAGCTAGTGTATACGACGGCTCCCTATTCAGTGTTATGCATGGTTC 797 Query 190267 ACTTGTAACATCTTCTCTAATCAGAGAAACAACTGGTTTAGAGTCACAGAACTATGGTTA 190326 | | ||| ||| | | ||||| |||| || | || || || | || || Sbjct 796 CTTGGCAACTTCTAGTTTGATCAGGTAAACCACAGAAAATGAATCTGCTAATGAAGGATA 737 Query 190327 CAAGTTTGGACAAGAAGAAGAAACATACAACATAGTAGCTGCTCATGGTTACTTTGG 190383 || ||| | ||||| ||||||| || || || | | | ||||||||||||||||| Sbjct 736 CAGATTTAGTCAAGAGAAAGAAACTTATAATATCGCATCCGCTCATGGTTACTTTGG 680 >seq85463 Length=6098 Score = 125 bits (138), Expect = 9e-24 Identities = 206/298 (69%), Gaps = 18/298 (6%) Strand=Plus/Plus Query 190369 TCATGGTTACTTTGGTAGACTTATCTTCCAGTATGCTTCATTCAACAACTCAAGAAGTTT 190428 ||||||||||||||| || | |||||||| |||||| ||| ||||||| | || Sbjct 4019 TCATGGTTACTTTGGCCGATTGATCTTCCAATATGCTAGTTTCCACAACTCTCGTTCGTT 4078 Query 190429 ACACTTCTTCTTAGCAGTATTCCCTGTAACCTGTGTATGGTTAACATCAATGGGTATTTG 190488 ||||||| || |||| | | |||||| || | ||||| || | | ||||| | Sbjct 4079 ACACTTCGTCCTAGCTGCTTGGCCTGTAGTGGGTATTTGGTTCACTGC--TAGGTATCAG 4136 Query 190489 CACAATGGCATTCAACTTAAATGGTTTCAACTTTAACCAGTCTGTAGTTGATGCACAAGG 190548 | ||||| ||||| ||||||||||||| |||||| | || ||||||||| ||| | Sbjct 4137 CGTCATGGCCTTCAATCTAAATGGTTTCAATTTTAACAAATCCGTAGTTGATAGTCAAAG 4196 Query 190549 TAAAATTGTTCCAACATGGGGCGATGTTCTTAACAGAGCAAACCTTGGTATGGAAGTAAT 190608 | ||| | | |||| ||| | | ||| | || ||||||||||| ||||| || Sbjct 4197 TCAAAGT-------CGTGGGTTGATATCATCAACCGTGCTAACCTTGGTATAGAAGTTAT 4249 Query 190609 GCATGAAAGAAATGCACACAACTTCCCACTAGACCTAGCTTGTGCTGAGTCTACAACA 190666 || |||| || || | | | |||||||||||| || ||| || ||||| Sbjct 4250 GC---------ATGCTCATAAATGCTCTCTAGACCTAGCTGCTGTTGAAGCTCCAACA 4298 >seq31467 Length=18065 Score = 113 bits (124), Expect = 6e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 190217 GGTGTAGCAGGTATGTTTGGTGGAGCATTATTCTCTGCAATGCATGGTTCACTTGTAACA 190276 || ||||| ||| | || || || | ||||| ||| ||||||||||| | ||||| Sbjct 5478 GGCGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACT 5419 Query 190277 TCTTCTCTAATCAGAGAAACAACTGGTTTAGAGTCACAGAACTATGGTTACAAGTTTGGA 190336 ||| | | ||| | ||||| || | || || || | ||||||| | || Sbjct 5418 TCTAGTTTGATCGGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATCCGGT 5359 Query 190337 CAAGAAGAAGAAACATACAACATAGTAGCTGCTCATGGTTACTTTGGTAGACTTATCTTC 190396 ||||| |||||||| || || || ||||| ||||||||||||||| | || | |||||| Sbjct 5358 CAAGAGGAAGAAACTTATAATATCGTAGCCGCTCATGGTTACTTTAGACGATTGATCTTC 5299 Query 190397 CAGTATGCTTCATTCAACAACTCAAGAAGTTTACACTTCTTCTTAGC 190443 || |||||| ||||||||||| | ||||||||||| |||| Sbjct 5298 CAATATGCTAGTTTCAACAACTCTCGTTCGTTACACTTCTTTCTAGC 5252 >seq81183 Length=8907 Score = 93.3 bits (102), Expect = 5e-14 Identities = 167/245 (68%), Gaps = 7/245 (3%) Strand=Plus/Plus Query 182485 AATGTCTCACGCCGTTAAAATATATGATACTTGCATTGGATGCACACAATGTGTGAAGGC 182544 |||||| ||| | || || || ||| |||| || || ||||| | ||| | || Sbjct 3018 AATGTCACACTCAGTAAAGATTTATTATACATGTATAGGATGTA-------TGTCCAAGC 3070 Query 182545 TTGTCCATTGGATGTATTAGAAATGGTTCCTTGGGATGGGTGCAAAGCAAAGCAAATTGC 182604 || | |||||||||||||| | | | ||||||| || ||||| || ||||| || Sbjct 3071 ATGGACCCCCGATGTATTAGAAATTATACTTGGGGATGGATGTAAAGCTAAACAAATAGC 3130 Query 182605 TTCCTCACCTAGAACTGAGGATTGTGTAGGATGTAAGAGATGTGAAACAGCATGTCCTAC 182664 || | || || || || || ||||| || |||||| |||||| | || ||||| | Sbjct 3131 TTTTGCCCCAAGGACCGAAGACTGTGTTGGTCGTAAGAAGTGTGAATCCGCTTGTCCAAT 3190 Query 182665 AGACTTTTTAAGTATTCGTGTTTACTTGGGTGCAGAAACCACAAGAAGCATGGGTCTAGC 182724 || || || ||||||| ||||| | | |||| || | ||||| |||||||| Sbjct 3191 TGATTTCTTGAGTATTCAGGTTTATATATGGCTTTAAACAACTCGCAGCATAGGTCTAGC 3250 Query 182725 ATATT 182729 |||| Sbjct 3251 TTATT 3255 >seq106760 Length=5111 Score = 84.2 bits (92), Expect = 3e-11 Identities = 128/181 (71%), Gaps = 1/181 (1%) Strand=Plus/Plus Query 184041 ATGTATTAGATAGAATACTTAAATCTAGAGATGCAATCATCAGTCACTTGAACTGGGTAT 184100 || |||||||| | || ||| | | | ||||||| || || | |||||| || Sbjct 3206 ATCTATTAGATCGTATTTTTAGACATCGTAATGCAATTATATCACATCTCGACTGGGCAT 3265 Query 184101 GCATCTTTTTAGGTTTTCATAGTTTTGGTCTTTATATTCACAATGATATTATGAGAGCAT 184160 | || ||||| | ||||| | ||||||| | |||||||| || |||| ||||| || | Sbjct 3266 GTATATTTTTGGACTTTCACAATTTTGGTTTGTATATTCATAACGATACCATGAGTGCCT 3325 Query 184161 TGGGTAGACCTAATGATCTATTCAGTGATACAGCAATACAATTACAACCTGTATTTGCAC 184220 ||| | ||| | ||| | || ||||| || |||||||||||| |||| ||||| | Sbjct 3326 AGGGC-GTCCTCAAGATATGTTTTCAGATACTGCTATACAATTACAATCTGTTTTTGCCC 3384 Query 184221 A 184221 | Sbjct 3385 A 3385 >seq31546 Length=9209 Score = 82.4 bits (90), Expect = 1e-10 Identities = 80/103 (78%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 187056 GGAGAGATAAACCAGTGGCACTTTCTATTGTTCAAGCAAGACTAGTTGGTTTATCACATT 187115 |||||||||| || ||||| ||||||||||| ||||||||| | ||||| ||| | |||| Sbjct 1216 GGAGAGATAAGCCCGTGGCCCTTTCTATTGTGCAAGCAAGATTGGTTGGATTAGCCCATT 1157 Query 187116 TTGCCATAGGATTTGTGCTTACCTATGCACCATTCCTGATAGC 187158 || | |||| | | | | || |||||| | ||| |||| || Sbjct 1156 TTTCTGTAGGTTATATATTCACTTATGCAGCTTTCTTGATTGC 1114 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 630464328769880