Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ocimum_20tenuiflorum_20[genbank_20GCA_5F001278415.1_202015-09-02] 121,993 sequences; 332,616,730 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq117762 87.8 1e-12 seq70367 84.2 2e-11 >seq117762 Length=309 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| || || || || ||||| || || || || |||| ||||| ||| | Sbjct 254 ATGCAAATCTTCGTCAAGACCCTTACCGGCAAGACCATCACTCTTGAAGTCGAGAGCTCG 195 Query 27850 GAC--GATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| ||| |||| ||||| || || ||||| || || |||| ||| | Sbjct 194 GACACGATTGACAAC--GTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACC 137 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| |||| || |||||||| || || | || || | ||||| |||| | ||||||| Sbjct 136 AGCAGAGGTTGATCTTTGCCGGCAAGCAGCTCGAGGATGGACGCACCTTGGCTGATTACA 77 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||| || || ||| | |||||||| | ||| | ||||| || Sbjct 76 ACATCCAGAAGGAATCCACCCTCCATTTGGTCCTCCGTCTCCGTGGTGG 28 >seq70367 Length=2979 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || ||||| || || ||||| ||||| || || |||| ||||| ||| || Sbjct 58 ATGCAGATCTTTGTCAAGACCCTTACAGGGAAGACCATCACCCTTGAGGTCGAGAGCTCC 117 Query 27850 GACGATGT--ACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| | | |||| || || || || ||||| ||||| |||| ||| | Sbjct 118 GACACTATTGACAAC--GTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCACCGGATC 175 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| || | || ||||||||||| || | || || | |||| |||| | || |||| Sbjct 176 AGCAGAGGCTTATCTTTGCCGGAAAGCAGCTTGAGGATGGCCGCACCTTGGCGGACTACA 235 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||| || |||||| || ||||| ||||| || | | ||||| || Sbjct 236 ACATTCAGAAAGAGTCGACCTTGCACTTGGTCCTGAGGCTCCGTGGTGG 284 Score = 84.2 bits (92), Expect = 2e-11 Identities = 136/194 (70%), Gaps = 4/194 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| ||||||||||| || ||||| |||||| || || | || || |||||| || Sbjct 286 ATGCAGATTTTTGTGAAGACCCTTACCGGGAAAACCATCACCCTAGAGGTTGAAAGCTCC 345 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || ||||| || || || || ||||| || ||| | || ||| | Sbjct 346 GACACAATTGACAAT--GTAAAGGCCAAGATTCAGGACAAGGAGGGTATCCCACCGGATC 403 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| |||| || ||||| || || || |||| || | || | |||| | ||||||| Sbjct 404 AGCAGAGGTTGATCTTTGCTGGGAAGCAGCTGGAAGATGGCCGTACCTTGGCTGATTACA 463 Query 27968 ACATCCAAAAAGAG 27981 ||||||| || ||| Sbjct 464 ACATCCAGAAGGAG 477 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355333307453511