Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ocimum_20tenuiflorum_20[genbank_20GCA_5F001278415.1_202015-09-02] 121,993 sequences; 332,616,730 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq99159 95.1 1e-14 >seq99159 Length=5808 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 |||||| || || ||||| || ||||| || || || ||||||||||||||| | ||||| Sbjct 1824 CACCAAGTGGAGAGTGCTTTCCTTTTGGATGTTGTAGTCGGCAAGTGTTCGTCCATCATC 1883 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194 ||||| ||||| || || || | | |||||| || | || | || ||| || || Sbjct 1884 GAGCTGCTTGCCAGCGAAAATCAACCTCTGCTGATCTGGAGGAATGCCCTCCTTATCTTG 1943 Query 39195 GATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTT 39254 ||| || |||| | | | |||||| ||| || || | || || | || Sbjct 1944 GATCTTGGCCTTGACATTGTCTATGGTATCGGAGCTCTCAACCTCAAGAGTAATGGTCTT 2003 Query 39255 TCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 ||| || | |||||||||||||||||||| Sbjct 2004 TCCAGTTAAGGTTTTAACAAAGATTTGCAT 2033 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428906956031609