Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ocimum_20tenuiflorum_20[genbank_20GCA_5F001278415.1_202015-09-02] 121,993 sequences; 332,616,730 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq99159 127 1e-24 seq70367 107 1e-18 seq117762 98.7 7e-16 seq111813 95.1 8e-15 seq95628 93.3 3e-14 seq109031 91.5 1e-13 seq55416 89.7 3e-13 seq69221 82.4 5e-11 seq66988 82.4 5e-11 >seq99159 Length=5808 Score = 127 bits (140), Expect = 1e-24 Identities = 167/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||| || || || ||||||||||| ||||| || || || || ||||| | Sbjct 1806 AATGCAGATCTTTGTCAAGACCCTCACGGGCAAAACCATAACCCTGGAGGTTGAGAGTTC 1747 Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 |||||| |||| ||| | ||| | || | || ||||| ||||| |||| || || | Sbjct 1746 GGACACAATTGATAATGTGAAAGCTAAGA-TTCAAGACAAGGAAGGGATACCCCCGGACC 1688 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 | ||| | || || ||||| ||||| || || || || | ||||||| ||| || |||| Sbjct 1687 AGCAGAGGTTGATTTTTGCTGGCAAGCAGCTCGAGGATGGACGCACTCTAGCGGACTACA 1628 Query 23789 ACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 | || || || ||||| || | ||| | || || ||||||||||||| Sbjct 1627 ATATTCAGAAGGAGTCGACTCTTCATCTGGTGTTGCGGTTGCGAGGAGG 1579 Score = 102 bits (112), Expect = 6e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| |||||||| || || || || ||||| ||||| || || | | Sbjct 2717 ATGCAGATCTTCGTGAAAACCCTAACAGGCAAGACAATCACCCTCGAGGTGGAAAGCTCA 2658 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | |||| ||||| ||||| ||||| | || || || || Sbjct 2657 GACACAATCGATAACGTAAAGGCTAAAATCCAGGACAAGGAAGGGATCCCTCCGGACCAG 2598 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || | || || ||||| ||||||||||| ||||| | ||||| | | || |||||| Sbjct 2597 CAAAGGTTGATCTTTGCGGGCAAACAACTCGAAGATGGTCGCACCCTTGCAGACTACAAC 2538 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGT 23819 ||||| || ||||| || | ||||| || Sbjct 2537 ATACAGAAGGAGTCTACCCTCCATTTGGT 2509 Score = 93.3 bits (102), Expect = 3e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || || ||||| ||| | ||||| || || ||||| |||||||| || | Sbjct 2261 ATGCAAATCTTTGTTAAGACCTTAACGGGCAAGACAATCACGCTCGAAGTGGAGAGTTCC 2202 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| |||| | || | || ||||| || || | || ||||| || Sbjct 2201 GACACCATCGACAATGTTAAGGCCAAGA-TTCAGGACAAGGAGGGCATTCCCCCAGACCA 2143 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | || || ||||| || || || || ||||| | |||||| | | |||||||| Sbjct 2142 GCAGAGATTGATCTTTGCTGGAAAGCAGCTCGAAGATGGCCGCACTCTTGCTGATTACAA 2083 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || |||||||| || Sbjct 2082 CATTCAGAAAGAGTCTAC 2065 >seq70367 Length=2979 Score = 107 bits (118), Expect = 1e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||| || || ||||| || || ||||| ||||| || || ||||| | | Sbjct 286 ATGCAGATTTTTGTGAAGACCCTTACCGGGAAAACCATCACCCTAGAGGTTGAAAGCTCC 345 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||| | |||| || ||| ||||| || ||| | || || ||||| Sbjct 346 GACACAATTGACAATGTAAAGGCCAAGATTCAGGACAAGGAGGGTATCCCACCGGATCAG 405 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | || || ||||| || || || |||||||| | || || || | ||||||||| Sbjct 406 CAGAGGTTGATCTTTGCTGGGAAGCAGCTGGAAGATGGCCGTACCTTGGCTGATTACAAC 465 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || |||||||| Sbjct 466 ATCCAGAAGGAGTCCAC 482 >seq117762 Length=309 Score = 98.7 bits (108), Expect = 7e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || ||||| || ||||| || || || || |||||||| ||||| || | || Sbjct 254 ATGCAAATCTTCGTCAAGACCCTTACCGGCAAGACCATCACTCTTGAAGTCGAGAGCTCG 195 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||| | | || || || ||||| || || | || || || || Sbjct 194 GACACGATTGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAG 135 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | || || ||||||||||| || || || || | |||||| || | ||||||||| Sbjct 134 CAGAGGTTGATCTTTGCCGGCAAGCAGCTCGAGGATGGACGCACCTTGGCTGATTACAAC 75 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGT 23819 || || || || ||||| | ||||| || Sbjct 74 ATCCAGAAGGAATCCACCCTCCATTTGGT 46 >seq111813 Length=4153 Score = 95.1 bits (104), Expect = 8e-15 Identities = 141/199 (71%), Gaps = 1/199 (1%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||||||||| ||||| || | || || ||||| || || |||||||| | | Sbjct 1557 AATGCAGATTTTCGTGAAAACTCTTGCTGGCAAGACGATAACCCTTGAAGTTGAAAGCTC 1498 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 |||||| | || | | || ||||| || |||||||| | || || || || Sbjct 1497 AGACACTATCGACAACGTCAAGGCCAAAATCTAAGATAAAGAAGGGATCCCCCCCGAGCA 1438 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGC-GATTACA 23788 || || || | ||||| || || ||||||||||| | | || ||||| ||||||| Sbjct 1437 GCAACGATTTTTCTTTGCTGGGAAGCAACTGGAAGATGGCAGAACACTAGGCAGATTACA 1378 Query 23789 ACATACAAAAAGAGTCCAC 23807 ||| ||||| || ||||| Sbjct 1377 GCATTCAAAAGGAATCCAC 1359 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||||||| | || || | || ||||| || |||||| | || || || | | Sbjct 1328 AATGCAGATTTTCATCAAGACTTTGACTGGAAAGACCATCACTTTGGAGGTGGAGAGCTC 1269 Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 ||||| |||| ||| | ||| | || ||| ||||| ||||| | || || || | Sbjct 1268 CGACACAATTGACAATGTGAAAGC-CAAGATTCAGGACAAGGAAGGCATTCCTCCGGACC 1210 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 | ||||| | |||||||| || || || || ||||| | | || ||| ||| |||| Sbjct 1209 AGCAGCGGCTGATATTTGCGGGTAAGCAGCTCGAAGATGGCTGGACGCTAGCCGACTACA 1150 Query 23789 ACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 |||| || || ||||| || | ||| | || | | ||| ||||||| Sbjct 1149 ACATCCAGAAGGAGTCGACCCTTCATCTGGTGCTGCGTTTGAGAGGAGG 1101 >seq95628 Length=1400 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || ||||| || || || || || || || ||||| | || ||||| | | Sbjct 7 ATGCAAATCTTCGTCAAGACACTGACCGGGAAGACCATCACCTTGGAGGTTGAAAGCTCT 66 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| | || | || | || ||||| || || | || || ||||| Sbjct 67 GACACGATCGACAATGTGAAGGCGAAGA-TTCAGGACAAGGAGGGGATTCCCCCGGATCA 125 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | ||||| |||||||| || || || || || | || || || | ||||||||| Sbjct 126 GCAGAGGTTAATCTTTGCCGGGAAGCAGCTCGAGGATGGTCGTACGTTGGCCGATTACAA 185 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 ||| || || |||||||| | || || || | ||||| ||||||| Sbjct 186 CATCCAGAAGGAGTCCACCCTGCACTTGGTGCTGAGGTTAAGAGGAGG 233 >seq109031 Length=8095 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || || | || || || |||||||| || ||||| || | || Sbjct 77 ATGCAGATCTTTGTCAAGACTTTGACCGGCAAGACGATCACGCTGGAAGTGGAGAGCTCG 136 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| | || | || | | ||||| || || | || || || || Sbjct 137 GACACGATCGATAATGTGAAGGCTAAGA-TACAGGACAAGGAGGGAATCCCACCGGACCA 195 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | | || |||||||||||||| || ||||| | | ||||| | || ||||| Sbjct 196 GCAGAGGCTGATTTTTGCCGGCAAACAGCTAGAAGATGGTAGGACTTTGGCGGACTACAA 255 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 ||| ||||| ||||| || || ||| | || | ||| |||| || ||| Sbjct 256 CATTCAAAAGGAGTCGACTTTGCATCTGGTGCTTAGGCTGCGTGGTGGA 304 >seq55416 Length=9261 Score = 89.7 bits (98), Expect = 3e-13 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 23704 GACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAA 23763 ||||||||||| |||| || ||||| ||| | ||||||||||||| |||||| ||||| Sbjct 4043 GACAAAGAAGGCATACCTCCTGATCAGCAGAGGCTAATATTTGCCGGTAAACAATTGGAA 3984 Query 23764 GACGAACGCACTTTAGGCGATTACAACATACAAAAAGAGTCCACATTACATTTAGTTTTA 23823 || | | || || | |||||||| || || ||||| || ||| | || | |||||| Sbjct 3983 GATGGTAGAACCTTGGCAGATTACAATATCCAGAAAGAATCAACACTTCACCTTGTTTTA 3924 Query 23824 AG 23825 || Sbjct 3923 AG 3922 >seq69221 Length=10640 Score = 82.4 bits (90), Expect = 5e-11 Identities = 101/138 (73%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 23704 GACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAA 23763 || ||||||||| | || || || || ||| | | |||||||| || |||||||||||| Sbjct 5878 GATAAAGAAGGTATCCCCCCTGACCAGCAGAGGCTTATATTTGCTGGTAAACAACTGGAA 5937 Query 23764 GACGAACGCACTTTAGGCGATTACAACATACAAAAAGAGTCCACATTACATTTAGTTTTA 23823 || | | ||||| | || || ||||| |||||||| || ||| | || | ||||| Sbjct 5938 GATGGTAGAACTTTGGCAGACTATAACATCCAAAAAGAATCAACACTTCACCTTGTTTTG 5997 Query 23824 AGGTTGCGAGGAGGATCA 23841 ||| | | |||||| || Sbjct 5998 AGGCTTAGGGGAGGAACA 6015 >seq66988 Length=1372 Score = 82.4 bits (90), Expect = 5e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||||||||| || ||||| || || ||||||||||| || || | | Sbjct 140 ATGCAGATCTTCGTTAAAACACTAACGGGGAAGACAATCACTCTCGAGGTCGAGAGCTCC 81 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | | || ||| ||| || ||||| || | ||||| ||||| Sbjct 80 GACACAATCGATAACGTCAAGGCAAAGATTCAGGATAAAGAGGGGATTCCGCCGGATCAG 21 Query 23731 CAGCGTTTAATATTTGCCGG 23750 |||||||| || || ||||| Sbjct 20 CAGCGTTTGATCTTCGCCGG 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337507050812444