Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ocimum_20tenuiflorum_20[genbank_20GCA_5F001278415.1_202015-09-02] 121,993 sequences; 332,616,730 total letters Query= NC_030240.1 Length=128058 Score E Sequences producing significant alignments: (Bits) Value seq82767 98.7 8e-16 seq55416 96.9 3e-15 seq69221 86.0 5e-12 >seq82767 Length=6942 Score = 98.7 bits (108), Expect = 8e-16 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 101012 CCGCCTCGCAATCTTAACACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCC 101071 || |||| | |||||| || | ||| | ||||||||||| || ||||||||||| ||| Sbjct 3849 CCTCCTCTAAGTCTTAAAACAAGGTGAAGTGTTGATTCTTTCTGGATATTGTAATCTGCC 3908 Query 101072 ATAGTTTTGGAATCTTCCAATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGGGC 101131 | ||| | ||||||||| ||||| || ||| |||| ||||| || ||||| || Sbjct 3909 AAGGTTCTACCATCTTCCAACTGTTTACCAGCAAATATTAGCCTCTGCTGGTCAGGAGGT 3968 Query 101132 ACGCCTTCTTTGTC 101145 | |||||||||||| Sbjct 3969 ATGCCTTCTTTGTC 3982 >seq55416 Length=9261 Score = 96.9 bits (106), Expect = 3e-15 Identities = 95/123 (77%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 101023 TCTTAACACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCCATAGTTTTGGA 101082 |||||| || | ||| | ||||||||||| || ||||||||||| |||| ||| | Sbjct 3921 TCTTAAAACAAGGTGAAGTGTTGATTCTTTCTGGATATTGTAATCTGCCAAGGTTCTACC 3980 Query 101083 ATCTTCCAATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGGGCACGCCTTCTTT 101142 ||||||||||||||| || ||| |||| ||||| || || || || | ||||||||| Sbjct 3981 ATCTTCCAATTGTTTACCGGCAAATATTAGCCTCTGCTGATCAGGAGGTATGCCTTCTTT 4040 Query 101143 GTC 101145 ||| Sbjct 4041 GTC 4043 >seq69221 Length=10640 Score = 86.0 bits (94), Expect = 5e-12 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 101024 CTTAACACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCCATAGTTTTGGAA 101083 || || || | ||| | |||||||||||||| || || || || |||| |||| | | Sbjct 5999 CTCAAAACAAGGTGAAGTGTTGATTCTTTTTGGATGTTATAGTCTGCCAAAGTTCTACCA 5940 Query 101084 TCTTCCAATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGGGCACGCCTTCTTTG 101143 ||||||| |||||| || ||| |||||||||| || ||||| ||| | |||||||| Sbjct 5939 TCTTCCAGTTGTTTACCAGCAAATATAAGCCTCTGCTGGTCAGGGGGGATACCTTCTTTA 5880 Query 101144 TC 101145 || Sbjct 5879 TC 5878 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 409051720547187