Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ocimum_20tenuiflorum_20[genbank_20GCA_5F001278415.1_202015-09-02] 121,993 sequences; 332,616,730 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq21024 116 5e-21 seq103549 113 6e-20 >seq21024 Length=7623 Score = 116 bits (128), Expect = 5e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 78399 GTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTG 78458 ||||| |||||||| | || ||||| ||||| || |||||| | || | |||| Sbjct 2794 GTTCCAGCATTAAAAAGAGTAGGAGAAGCATGTGTGAACCATCGCTGTGACAAAAGATGA 2735 Query 78459 TATGTTTCAATAGCTGATTCTATGTCC-CATTGATGAATTCCTACCGCTACACGCATCAA 78517 ||||||| || || || || || || | ||| || ||||| || || ||||||||||| Sbjct 2734 TATGTTTGTATCGCAGAATCAATATCATCCTTG-TGGATTCCAACAGCAACACGCATCAA 2676 Query 78518 CATATGCTGAGGTCTTTCAACCGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAA 78577 ||| ||||| |||||||| || ||| || || || |||| || || |||| | Sbjct 2675 CATGTGCTGTGGTCTTTCTACAACCTTGCCTTTGATCTTTAACAGATAGGACCTTTCAAG 2616 Query 78578 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTCTCGTAAATAAT 78625 |||||||||||||||| | | || ||||||||| || || || || Sbjct 2615 AGTTTTAAAACCAAAAAAATCATAGTCAAAGTCTCTGTCATATATGAT 2568 Score = 109 bits (120), Expect = 8e-19 Identities = 159/222 (72%), Gaps = 2/222 (1%) Strand=Plus/Minus Query 78159 CCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCG 78218 || ||||| || | ||||| || |||| ||| |||||| | |||||||| ||| || Sbjct 3167 CCGCCCTGGTCCACATATCGAGCAGTGTCATTGAAAACTCGAAGCATTGGAACAATGCCA 3108 Query 78219 TTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGAT 78278 || ||| ||||||||||||| ||||||||||| | || || |||||| || || Sbjct 3107 TTTGATAATCCATTTGTTCCACGTATATAACTTCCTGTGGCACGGATATTATGAACAGAC 3048 Query 78279 ATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATA 78338 | || || ||||| || || |||| ||| || || | ||||||||| || Sbjct 3047 ACACCAATACCTCCAGCTGATTTGCTAATTACAGCACATTCCTTAAGTGTATCGTATATG 2988 Query 78339 CCCTCTATACTGTCATCCATCATG-TTAAGAAGAAAACAGCT 78379 ||||| ||||| |||||| ||||| || ||| |||||||| Sbjct 2987 CCCTCAATACTATCATCCTTCATGCATATCAAG-AAACAGCT 2947 >seq103549 Length=14649 Score = 113 bits (124), Expect = 6e-20 Identities = 114/147 (78%), Gaps = 1/147 (1%) Strand=Plus/Minus Query 77897 CTCTCTTTCATATTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCC 77956 |||||| || || | |||||| | ||||||||| || |||||| |||| ||||||| Sbjct 8400 CTCTCTCTCGTACTTAGTATACAAAGCTTCAAATTCTTCACCCCAACAATCAGCCAATCC 8341 Query 77957 AGGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATAAA 78016 |||| |||||||| || | || |||||| | |||| || ||||| || |||||| Sbjct 8340 AGGGGCCTCATTTGGACAGAACAGTGACCATTGTCCATTAGACTGAACTCTTTGCATAAA 8281 Query 78017 GAGATCAGGTATCCATAGAGCAATAAA 78043 ||||||||||||||| ||||| ||||| Sbjct 8280 GAGATCAGGTATCCAAAGAGC-ATAAA 8255 Score = 100 bits (110), Expect = 4e-16 Identities = 157/222 (71%), Gaps = 2/222 (1%) Strand=Plus/Minus Query 78159 CCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCG 78218 || ||||| || | ||||| || |||| ||| |||||| | |||||||| || || Sbjct 7883 CCACCCTGGTCAACATATCGAGCAGTGTCATTGAAAACTCGAAGCATTGGAACAACGCCA 7824 Query 78219 TTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGAT 78278 || || ||||||||||||| ||||||||||| | || ||||||||| | ||| Sbjct 7823 TTTGACAATCCATTTGTTCCACGTATATAACTTCCTGTAGCACGAATATTATGGACGGAC 7764 Query 78279 ATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATA 78338 | || || ||||| || ||| || | ||| || || | |||||| || || Sbjct 7763 ACACCAATCCCTCCAGCTGATTTACTAATAACAGCACATTCCTTAAGTGTATCATATATG 7704 Query 78339 CCCTCTATACTGTCATCCATCATG-TTAAGAAGAAAACAGCT 78379 ||||| ||||| |||||| ||||| || ||| |||||||| Sbjct 7703 CCCTCAATACTATCATCCTTCATGCATATCAAG-AAACAGCT 7663 Score = 86.0 bits (94), Expect = 9e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 78399 GTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTG 78458 || || |||||||| | || ||||| ||||| || |||||| || || || |||| Sbjct 7486 GTCCCAGCATTAAAAAGGGTAGGAGAAGCATGAGTGAACCATCGTTGCGACAGAAGATGA 7427 Query 78459 TATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAAC 78518 ||||||| || | || || || || | ||| ||||| || | || ||||| ||| Sbjct 7426 TATGTTTTTATCACAGAATCAATATCATCCTTATGGATTCCAACAGAAACTCGCATTAAC 7367 Query 78519 ATATGCTGAGGTCTTTCAACCGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAA 78578 || || || || |||||||| ||| | | || |||| || || |||| | Sbjct 7366 ATGTGTTGTGGCCTTTCAACAACCTTGCCTTGAACCTTTAACAGATAAGACCTTTCAAGC 7307 Query 78579 GTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTCTCGTAAATAAT 78625 ||||||||||||||||| | || |||||||| || || || || Sbjct 7306 GTTTTAAAACCAAAATAATCATAGTCGAAGTCTCTGTCATATATGAT 7260 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 693609490863520