Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ocimum_20tenuiflorum_20[genbank_20GCA_5F001278415.1_202015-09-02] 121,993 sequences; 332,616,730 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq21024 129 8e-25 seq103549 118 2e-21 >seq21024 Length=7623 Score = 129 bits (142), Expect = 8e-25 Identities = 167/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 76994 GTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTG 77053 ||||| |||||||| | |||||||| ||||| ||||||||| | || | |||| Sbjct 2794 GTTCCAGCATTAAAAAGAGTAGGAGAAGCATGTGTGAACCATCGCTGTGACAAAAGATGA 2735 Query 77054 TATGTTTCAATAACTGCTTCTATATCC-CATTGATGAATTCCTACAGCGACACGCATCAA 77112 ||||||| || | | || ||||| | ||| || ||||| ||||| ||||||||||| Sbjct 2734 TATGTTTGTATCGCAGAATCAATATCATCCTTG-TGGATTCCAACAGCAACACGCATCAA 2676 Query 77113 CATATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAA 77172 ||| ||||| |||| ||||||| ||| || || || |||| || || |||| | Sbjct 2675 CATGTGCTGTGGTCTTTCTACAACCTTGCCTTTGATCTTTAACAGATAGGACCTTTCAAG 2616 Query 77173 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAAT 77220 |||||||||||||||| | | || ||||||||| || || || || Sbjct 2615 AGTTTTAAAACCAAAAAAATCATAGTCAAAGTCTCTGTCATATATGAT 2568 Score = 127 bits (140), Expect = 3e-24 Identities = 163/222 (73%), Gaps = 2/222 (1%) Strand=Plus/Minus Query 76754 CCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCG 76813 || ||||| || | ||||| ||||||| ||| |||||| | |||||||| |||||| Sbjct 3167 CCGCCCTGGTCCACATATCGAGCAGTGTCATTGAAAACTCGAAGCATTGGAACAATGCCA 3108 Query 76814 TTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGAT 76873 || ||| |||||||||||| ||||||||||| ||||| |||||| || ||| Sbjct 3107 TTTGATAATCCATTTGTTCCACGTATATAACTTCCTGTGGCACGGATATTATGAACAGAC 3048 Query 76874 AGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATG 76933 | || || ||||| || ||| |||| |||||| || | ||| || || ||| Sbjct 3047 ACACCAATACCTCCAGCTGATTTGCTAATTACAGCACATTCCTTAAGTGTATCGTATATG 2988 Query 76934 CCCTCTATACTATCATCCATCATG-TTAAGAAGAAAACAGCT 76974 ||||| |||||||||||| ||||| || ||| |||||||| Sbjct 2987 CCCTCAATACTATCATCCTTCATGCATATCAAG-AAACAGCT 2947 >seq103549 Length=14649 Score = 118 bits (130), Expect = 2e-21 Identities = 161/222 (73%), Gaps = 2/222 (1%) Strand=Plus/Minus Query 76754 CCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCG 76813 || ||||| || | ||||| ||||||| ||| |||||| | |||||||| || ||| Sbjct 7883 CCACCCTGGTCAACATATCGAGCAGTGTCATTGAAAACTCGAAGCATTGGAACAACGCCA 7824 Query 76814 TTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGAT 76873 || || |||||||||||| ||||||||||| |||||||||||| | || Sbjct 7823 TTTGACAATCCATTTGTTCCACGTATATAACTTCCTGTAGCACGAATATTATGGACGGAC 7764 Query 76874 AGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATG 76933 | || || ||||| || |||| || | |||||| || | ||| ||||| ||| Sbjct 7763 ACACCAATCCCTCCAGCTGATTTACTAATAACAGCACATTCCTTAAGTGTATCATATATG 7704 Query 76934 CCCTCTATACTATCATCCATCATG-TTAAGAAGAAAACAGCT 76974 ||||| |||||||||||| ||||| || ||| |||||||| Sbjct 7703 CCCTCAATACTATCATCCTTCATGCATATCAAG-AAACAGCT 7663 Score = 104 bits (114), Expect = 3e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 76994 GTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTG 77053 || || |||||||| | |||||||| ||||||||||||||| || || || |||| Sbjct 7486 GTCCCAGCATTAAAAAGGGTAGGAGAAGCATGAGTGAACCATCGTTGCGACAGAAGATGA 7427 Query 77054 TATGTTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAAC 77113 ||||||| || || | || ||||| | ||| ||||| |||| || ||||| ||| Sbjct 7426 TATGTTTTTATCACAGAATCAATATCATCCTTATGGATTCCAACAGAAACTCGCATTAAC 7367 Query 77114 ATATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAA 77173 || || || || | ||| ||| ||| | | || |||| || || |||| | Sbjct 7366 ATGTGTTGTGGCCTTTCAACAACCTTGCCTTGAACCTTTAACAGATAAGACCTTTCAAGC 7307 Query 77174 GTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAAT 77220 ||||||||||||||||| | || |||||||| || || || || Sbjct 7306 GTTTTAAAACCAAAATAATCATAGTCGAAGTCTCTGTCATATATGAT 7260 Score = 100 bits (110), Expect = 4e-16 Identities = 111/147 (76%), Gaps = 1/147 (1%) Strand=Plus/Minus Query 76492 CTCTCTTTCATATTGTGTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACC 76551 |||||| || || | ||||| || ||||||||| || |||||| |||| |||| || Sbjct 8400 CTCTCTCTCGTACTTAGTATACAAAGCTTCAAATTCTTCACCCCAACAATCAGCCAATCC 8341 Query 76552 AGGACATTCATTCGGACACATCAATGACCACTCACCATCTTCCTTAACCCGTTTCATAAA 76611 ||| ||||| ||||| | || |||||| | |||| || ||| | || |||||| Sbjct 8340 AGGGGCCTCATTTGGACAGAACAGTGACCATTGTCCATTAGACTGAACTCTTTGCATAAA 8281 Query 76612 GAGATCAGGTATCCATAGAGCAATAAA 76638 ||||||||||||||| ||||| ||||| Sbjct 8280 GAGATCAGGTATCCAAAGAGC-ATAAA 8255 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 711847237421760