Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ocimum_20tenuiflorum_20[genbank_20GCA_5F001278415.1_202015-09-02] 121,993 sequences; 332,616,730 total letters Query= NC_031235.1 Length=194437 Score E Sequences producing significant alignments: (Bits) Value seq85463 149 8e-31 seq115592 138 1e-27 seq99465 114 2e-20 seq71831 109 7e-19 seq110764 98.7 1e-15 seq42107 84.2 3e-11 >seq85463 Length=6098 Score = 149 bits (164), Expect = 8e-31 Identities = 205/288 (71%), Gaps = 18/288 (6%) Strand=Plus/Plus Query 183900 TCATGGATACTTTGGTCGTCTGATCTTCCAGTATGCTTCGTTTAACAATTCTCGTTCTCT 183959 |||||| |||||||| || |||||||||| |||||| || |||| |||||||| | Sbjct 4019 TCATGGTTACTTTGGCCGATTGATCTTCCAATATGCTAGTTTCCACAACTCTCGTTCGTT 4078 Query 183960 TCACTTCTTCCTTGCTGCTTGGCCAGTGGTCGGCATCTGGTTTACTGCTCTTGGTGTTAG 184019 |||||| |||| ||||||||||| || || || || ||||| |||| || ||| | || Sbjct 4079 ACACTTCGTCCTAGCTGCTTGGCCTGTAGTGGGTATTTGGTTCACTG--CTAGGTATCAG 4136 Query 184020 CACTATGGCATTTAACCTGAATGGTTTTAACTTCAACCAGTCCATCATTGATGGTCAAGG 184079 | ||||| || || || |||||||| || || ||| | ||| | ||||| ||||| | Sbjct 4137 CGTCATGGCCTTCAATCTAAATGGTTTCAATTTTAACAAATCCGTAGTTGATAGTCAAAG 4196 Query 184080 TCGTGTCCTGAACACCTGGGCAGACGTTCTCAACCGTGCTGGTCTTGGCATGGAAGTGAT 184139 || || | |||| || | ||||||||||| ||||| || ||||| || Sbjct 4197 TC-------AAAGTCGTGGGTTGATATCATCAACCGTGCTAACCTTGGTATAGAAGTTAT 4249 Query 184140 GCACGAGCGTAATGCTCACAACTTCCCTCTCGACCTTGCTGCTGCTGA 184187 || ||||||| || | | |||| ||||| ||||||| ||| Sbjct 4250 GC---------ATGCTCATAAATGCTCTCTAGACCTAGCTGCTGTTGA 4288 >seq115592 Length=218 Score = 138 bits (152), Expect = 1e-27 Identities = 152/201 (76%), Gaps = 1/201 (0%) Strand=Plus/Minus Query 186532 TTGGTGG-TGCTCTGCTGTCAGCAATCCATGGTGTTACTGTAGAAAATACTCTTTATGAA 186590 |||| || |||| |||| | || || ||||||| ||| |||||||||||| | | |||| Sbjct 204 TTGGGGGCTGCTTTGCTATGCGCTATTCATGGTGCTACCGTAGAAAATACTTTATTTGAA 145 Query 186591 GATGGCGAACAAGCAAACACATTCAAAGCATTCGATACGACGCAAGAAGAAGAAACCTAT 186650 ||||| || ||||| |||||| || || | | || |||| |||||||| ||| Sbjct 144 GATGGTGATGGTGCAAATACATTCCGTGCTTTTAACCCAACTCAAGCCGAAGAAACTTAT 85 Query 186651 TCGATGGTCACTGCGAACAGATTCTGGTCACAGATCTTCGGAATTGCGTTTAGCAATAAG 186710 || ||||||||||| ||| | || ||||| || ||||| || |||| ||| |||||| Sbjct 84 TCCATGGTCACTGCTAACCGCTTTTGGTCCCAAATCTTTGGGGTTGCTTTTTCCAATAAA 25 Query 186711 CGTTGGCTTCATTTCTTCATG 186731 |||||| | |||||||| ||| Sbjct 24 CGTTGGTTACATTTCTTTATG 4 >seq99465 Length=4513 Score = 114 bits (126), Expect = 2e-20 Identities = 215/312 (69%), Gaps = 8/312 (3%) Strand=Plus/Plus Query 183615 TGTCTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTTAGTGATGGTATGCCCCTGGGTAT 183674 ||| ||| || |||| | | |||||||| |||| |||||||||||| | || || Sbjct 2945 TGTTTTCTTGATCTACCAAATTGGTCAAGGAAGTTTTTCTGATGGTATGCCTCCAGGAAT 3004 Query 183675 CAGTGGCACCTTTAACTATATGCTTGTCTTCCAAGCAGAGCACAACATCCTGATGCACCC 183734 | | || || |||| ||| |||| ||| | || ||||| || || || ||||| Sbjct 3005 TTCTTGTACTTTCAACTTCATGATTGTATTCTAGGCTGAGCATAATATTCTTATGCA--- 3061 Query 183735 CTTCCACATGCTGGGTGTCGCTGGTGTCTTCGGTGGTTCTCTGTTCAGTGCAATGCACGG 183794 | || ||| || || || ||||| |||| || || || |||||||| ||||| || Sbjct 3062 --TTCATATGTGAGGCGTAGCGGGTGTATTCGACGGCTCCCTATTCAGTGCTATGCATGG 3119 Query 183795 TTCTCTGGTTACTTCCTCGCTGGTTC-GTGAAACCACTGAGTCTGAGTCACAGAACTATG 183853 ||| |||| |||| || | | | || | ||||||| || ||| | || | | Sbjct 3120 TTCCTTGGTAACTT-CTAGTTTGATCAGGTAAACCACAGAAAATGAAACTGCTAATGAAG 3178 Query 183854 GTTACAAGTTCGGTCAAGAAGAAGAGACCTACAACATTGTCGCTGCTCATGGATACTTTG 183913 ||||||| |||||||| | | |||| | || || || || ||||| |||| ||||||| Sbjct 3179 GTTACAAATTCGGTCAGGGA-AAGAAGCTTATAATATCGTAGCTGCATATGGTTACTTTG 3237 Query 183914 GTCGTCTGATCT 183925 | || |||||| Sbjct 3238 GCCGATTGATCT 3249 >seq71831 Length=3823 Score = 109 bits (120), Expect = 7e-19 Identities = 213/311 (68%), Gaps = 3/311 (1%) Strand=Plus/Minus Query 183615 TGTCTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTTAGTGATGGTATGCCCCTGGGTAT 183674 ||| ||| || | || || | |||||||| |||| |||||||||||| || || || Sbjct 978 TGTTTTCTTGATTTACCCAATTGGTCAAGGAAGTTTTTTTGATGGTATGCCTCTAGGAAT 919 Query 183675 CAGTGGCACCTTTAACTATATGCTTGTCTTCCAAGCAGAGCACAACATCCTGATGCACCC 183734 | | || || |||| ||| |||| || | || |||||| |||| || ||| |||| Sbjct 918 TTCTTGTACTTTCAACTTCATGATTGTATTTTAGGCTGAGCAC-ACATTCTTATGTACCC 860 Query 183735 CTTCCACATGCTGGGTGTCGCTGGTGTCTTCGGTGGTTCTCTGTTCAGTGCAATGCACGG 183794 || || ||| | | || ||| |||| | || || || || ||||||| ||||| || Sbjct 859 ATTTCATATGTTAAGCGTAGCTAGTGTATACGACGGCTCCCTATTCAGTGTTATGCATGG 800 Query 183795 TTCTCTGGTTACTTCCTCGCTGGTTC-GTGAAACCACTGAGTCTGAGTCACAGAACTATG 183853 ||| ||| |||| || | | | || | ||||||| || ||| || || | | Sbjct 799 TTCCTTGGCAACTT-CTAGTTTGATCAGGTAAACCACAGAAAATGAATCTGCTAATGAAG 741 Query 183854 GTTACAAGTTCGGTCAAGAAGAAGAGACCTACAACATTGTCGCTGCTCATGGATACTTTG 183913 | |||| || ||||||| |||| || || || || | | |||||||| ||||||| Sbjct 740 GATACAGATTTAGTCAAGAGAAAGAAACTTATAATATCGCATCCGCTCATGGTTACTTTG 681 Query 183914 GTCGTCTGATC 183924 | || ||||| Sbjct 680 GCCGATTGATC 670 >seq110764 Length=2751 Score = 98.7 bits (108), Expect = 1e-15 Identities = 86/107 (80%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 183952 CGTTCTCTTCACTTCTTCCTTGCTGCTTGGCCAGTGGTCGGCATCTGGTTTACTGCTCTT 184011 ||||| | ||||||||||| ||||||||||| || || || |||||||| |||||| | Sbjct 1540 CGTTCGTTACACTTCTTCCTAGCTGCTTGGCCTGTAGTGGGTATCTGGTTCACTGCTTTA 1599 Query 184012 GGTGTTAGCACTATGGCATTTAACCTGAATGGTTTTAACTTCAACCA 184058 ||| | | ||| ||||| || ||||| || ||||| || |||||||| Sbjct 1600 GGTATCAACACCATGGCTTTCAACCTAAACGGTTTCAATTTCAACCA 1646 >seq42107 Length=2384 Score = 84.2 bits (92), Expect = 3e-11 Identities = 82/106 (77%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 183527 TGGGTCGTGAGTGGGAATTGTCTTACCGTCTCGGTATGCGTCCTTGGATCTGTGTTGCTT 183586 |||||||||||||||| | || |||| | |||||||| |||||||| |||||| | Sbjct 1375 TGGGTCGTGAGTGGGAGCTTAGTTTCCGTTTGGGTATGCGCCCTTGGATTGCTGTTGCAT 1434 Query 183587 ATAGCGCACCTGTTGCTGCTGCAACCGCTGTCTTCCTGGTCTATCC 183632 || || |||||||| |||| |||||||| ||| || |||| || Sbjct 1435 ATTCAGCTCCTGTTGCAGCTGTTACCGCTGTTTTCTTGATCTACCC 1480 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 621121797071160