Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ocimum_20tenuiflorum_20[genbank_20GCA_5F001278415.1_202015-09-02] 121,993 sequences; 332,616,730 total letters Query= NC_031242.1 Length=174307 Score E Sequences producing significant alignments: (Bits) Value seq31467 170 2e-37 seq99465 159 4e-34 seq71831 156 5e-33 seq115592 154 2e-32 seq85463 143 3e-29 seq110764 116 4e-21 seq96029 102 9e-17 seq110392 95.1 1e-14 >seq31467 Length=18065 Score = 170 bits (188), Expect = 2e-37 Identities = 178/234 (76%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 164479 CGGCGTAGCAGGTGTGTTTGGCGGTTCTCTGTTCAGTGCAATGCACGGTTCGCTGGTTAC 164538 ||||||||| ||||| || ||||| || || |||||||| ||||| ||||| |||| || Sbjct 5479 CGGCGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAAC 5420 Query 164539 TTCTTCGCTGGTTCGTGAGACCACCGAAAATGAGTCCCAGAACTATGGTTACAAGTTTGG 164598 |||| || | | || ||||| |||||||| || || | ||||||| | || Sbjct 5419 TTCTAGTTTGATCGGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATCCGG 5360 Query 164599 TCAGGAAGAAGAAACCTACAACATCGTTGCCGCTCACGGTTACTTTGGTCGTCTGATTTT 164658 ||| || |||||||| || || ||||| |||||||| ||||||||| | || |||| || Sbjct 5359 TCAAGAGGAAGAAACTTATAATATCGTAGCCGCTCATGGTTACTTTAGACGATTGATCTT 5300 Query 164659 CCAATACGCTTCCTTCAACAACTCCCGTTCGCTGCACTTCTTCCTCGCAGCATG 164712 |||||| ||| ||||||||||| |||||| | |||||||| || || || || Sbjct 5299 CCAATATGCTAGTTTCAACAACTCTCGTTCGTTACACTTCTTTCTAGCTGCTTG 5246 >seq99465 Length=4513 Score = 159 bits (176), Expect = 4e-34 Identities = 221/308 (72%), Gaps = 6/308 (2%) Strand=Plus/Plus Query 164348 GTGTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCAATGCCTCTGGGCATC 164407 || ||| || |||| | | |||||||| ||| ||||||| ||||||| || || Sbjct 2946 GTTTTCTTGATCTACCAAATTGGTCAAGGAAGTTTTTCTGATGGTATGCCTCCAGGAATT 3005 Query 164408 TCTGGAACCTTCAACTACATGTTGGTCTTCCAGGCTGAGCACAACATCCTCATGCACCCC 164467 ||| | || ||||||| |||| | || ||| |||||||||| || || || ||||| Sbjct 3006 TCTTGTACTTTCAACTTCATGATTGTATTCTAGGCTGAGCATAATATTCTTATGCA---- 3061 Query 164468 TTCCATATGCTCGGCGTAGCAGGTGTGTTTGGCGGTTCTCTGTTCAGTGCAATGCACGGT 164527 | |||||| |||||||| ||||| || | ||| || || |||||||| ||||| ||| Sbjct 3062 -TTCATATGTGAGGCGTAGCGGGTGTATTCGACGGCTCCCTATTCAGTGCTATGCATGGT 3120 Query 164528 TCGCTGGTTACTTCTTCGCTGGTTCGTGAGACCACCGAAAATGAGTCCCAGAACTATGGT 164587 || |||| |||||| || | | | ||||| |||||||| | || | ||| Sbjct 3121 TCCTTGGTAACTTCTAGTTTGATCAGGTAAACCACAGAAAATGAAACTGCTAATGAAGGT 3180 Query 164588 TACAAGTTTGGTCAGGAAGAAGAAACCTACAACATCGTTGCCGCTCACGGTTACTTTGGT 164647 ||||| || ||||||| | ||||| | || || ||||| || || | ||||||||||| Sbjct 3181 TACAAATTCGGTCAGGGA-AAGAAGCTTATAATATCGTAGCTGCATATGGTTACTTTGGC 3239 Query 164648 CGTCTGAT 164655 || |||| Sbjct 3240 CGATTGAT 3247 >seq71831 Length=3823 Score = 156 bits (172), Expect = 5e-33 Identities = 220/308 (71%), Gaps = 1/308 (0%) Strand=Plus/Minus Query 164348 GTGTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCAATGCCTCTGGGCATC 164407 || ||| || | || || | |||||||| ||| | ||||| |||||||| || || Sbjct 977 GTTTTCTTGATTTACCCAATTGGTCAAGGAAGTTTTTTTGATGGTATGCCTCTAGGAATT 918 Query 164408 TCTGGAACCTTCAACTACATGTTGGTCTTCCAGGCTGAGCACAACATCCTCATGCACCCC 164467 ||| | || ||||||| |||| | || || |||||||||||| ||| || ||| |||| Sbjct 917 TCTTGTACTTTCAACTTCATGATTGTATTTTAGGCTGAGCACA-CATTCTTATGTACCCA 859 Query 164468 TTCCATATGCTCGGCGTAGCAGGTGTGTTTGGCGGTTCTCTGTTCAGTGCAATGCACGGT 164527 || |||||| | ||||||| |||| | | ||| || || ||||||| ||||| ||| Sbjct 858 TTTCATATGTTAAGCGTAGCTAGTGTATACGACGGCTCCCTATTCAGTGTTATGCATGGT 799 Query 164528 TCGCTGGTTACTTCTTCGCTGGTTCGTGAGACCACCGAAAATGAGTCCCAGAACTATGGT 164587 || ||| |||||| || | | | ||||| |||||||| || || | || Sbjct 798 TCCTTGGCAACTTCTAGTTTGATCAGGTAAACCACAGAAAATGAATCTGCTAATGAAGGA 739 Query 164588 TACAAGTTTGGTCAGGAAGAAGAAACCTACAACATCGTTGCCGCTCACGGTTACTTTGGT 164647 |||| ||| |||| || ||||||| || || |||| ||||||| ||||||||||| Sbjct 738 TACAGATTTAGTCAAGAGAAAGAAACTTATAATATCGCATCCGCTCATGGTTACTTTGGC 679 Query 164648 CGTCTGAT 164655 || |||| Sbjct 678 CGATTGAT 671 >seq115592 Length=218 Score = 154 bits (170), Expect = 2e-32 Identities = 162/213 (76%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 165711 GTAGCAGGTATCTTAGGCGGAGCATTGCTTTCTGCCATTCATGGTGTTACAGTAGAGAAT 165770 || || ||| | || || | || ||||| | || |||||||||| ||| ||||| ||| Sbjct 216 GTTGCTGGTGTATTGGGGGCTGCTTTGCTATGCGCTATTCATGGTGCTACCGTAGAAAAT 157 Query 165771 ACTTTGTATGAAGATGGTGAACAAGCAAACACTTTCAAAGCATTTGATAGTACTCAGGAA 165830 ||||| | |||||||||||| ||||| || ||| || ||| | ||||| | Sbjct 156 ACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCTTTTAACCCAACTCAAGCC 97 Query 165831 GAGGAAACTTATTCCATGGTCACTGCTAACCGTTTCTGGTCTCAGATTTTTGGTATTGCT 165890 || ||||||||||||||||||||||||||||| || ||||| || || ||||| ||||| Sbjct 96 GAAGAAACTTATTCCATGGTCACTGCTAACCGCTTTTGGTCCCAAATCTTTGGGGTTGCT 37 Query 165891 TTCAGCAATAAGCGTTGGCTTCACTTCTTTATG 165923 || |||||| |||||| | || ||||||||| Sbjct 36 TTTTCCAATAAACGTTGGTTACATTTCTTTATG 4 >seq85463 Length=6098 Score = 143 bits (158), Expect = 3e-29 Identities = 204/288 (71%), Gaps = 18/288 (6%) Strand=Plus/Plus Query 164632 TCACGGTTACTTTGGTCGTCTGATTTTCCAATACGCTTCCTTCAACAACTCCCGTTCGCT 164691 ||| ||||||||||| || |||| |||||||| ||| ||| ||||||| |||||| | Sbjct 4019 TCATGGTTACTTTGGCCGATTGATCTTCCAATATGCTAGTTTCCACAACTCTCGTTCGTT 4078 Query 164692 GCACTTCTTCCTCGCAGCATGGCCTGTTGTCGGTATCTGGTTTACTGCTCTGGGCGTTAG 164751 |||||| |||| || || |||||||| || ||||| ||||| |||| || || | || Sbjct 4079 ACACTTCGTCCTAGCTGCTTGGCCTGTAGTGGGTATTTGGTTCACTG--CTAGGTATCAG 4136 Query 164752 CACCATGGCATTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCATCGATGGTCAGGG 164811 | |||||| ||||| || || |||||||| || ||| | ||| | | ||| |||| | Sbjct 4137 CGTCATGGCCTTCAATCTAAATGGTTTCAATTTTAACAAATCCGTAGTTGATAGTCAAAG 4196 Query 164812 TCGTGTGCTCAACACCTGGGCAGACGTTCTCAACCGTGCTGGTCTGGGCATGGAAGTGAT 164871 || || | |||| || | ||||||||||| || || || ||||| || Sbjct 4197 TC-------AAAGTCGTGGGTTGATATCATCAACCGTGCTAACCTTGGTATAGAAGTTAT 4249 Query 164872 GCACGAGCGTAATGCTCACAACTTCCCTCTCGACCTTGCTGCTGCTGA 164919 || ||||||| || | | |||| ||||| ||||||| ||| Sbjct 4250 GC---------ATGCTCATAAATGCTCTCTAGACCTAGCTGCTGTTGA 4288 >seq110764 Length=2751 Score = 116 bits (128), Expect = 4e-21 Identities = 90/107 (84%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 164684 CGTTCGCTGCACTTCTTCCTCGCAGCATGGCCTGTTGTCGGTATCTGGTTTACTGCTCTG 164743 |||||| | ||||||||||| || || |||||||| || ||||||||||| |||||| | Sbjct 1540 CGTTCGTTACACTTCTTCCTAGCTGCTTGGCCTGTAGTGGGTATCTGGTTCACTGCTTTA 1599 Query 164744 GGCGTTAGCACCATGGCATTCAACCTCAACGGTTTCAACTTCAACCA 164790 || | | ||||||||| |||||||| ||||||||||| |||||||| Sbjct 1600 GGTATCAACACCATGGCTTTCAACCTAAACGGTTTCAATTTCAACCA 1646 >seq96029 Length=8464 Score = 102 bits (112), Expect = 9e-17 Identities = 203/296 (69%), Gaps = 5/296 (2%) Strand=Plus/Plus Query 165195 TTTGTTGGCTGGTCTGGACTTCTTCTTTTTCCCACTGCTTATCTTGCTCTTGGGGGTTGG 165254 |||| |||||| |||| || | || ||| | ||| ||| ||||| | |||| |||| Sbjct 1615 TTTGGAGGCTGGACTGGCCTATTACTCTTTACTTGTGCCTATTTTGCTATAGGGG-TTGG 1673 Query 165255 CTTACTGGGACTACTTTCGTCACGAGTTGGTATACTCACGGACTTGCGAGTTCCTATCTT 165314 | | || || ||||| || || |||||||| || | | || ||||||||| | Sbjct 1674 TTCGCAGGTACAACTTTTGTAACTTCATGGTATACCCATAAATTAGCAAGTTCCTATTTG 1733 Query 165315 GAGGG-TGCAAACTTTCTTA-CTGCGGCAGTTTCTACTCCAGCAGACGCTATGGGTCATT 165372 || || || || ||||||| | | |||||||||| || || | | | | |||| Sbjct 1734 GAAGGCTGTAA--TTTCTTAACAACTGCAGTTTCTAGTCTTGCTAATAGTTTAGCGCATT 1791 Query 165373 CTCTTCTGCTTCTATGGGGTCCTGAGTCTCAAGGGGACTTCATCCGCTGGTGCCAACTTG 165432 || | || | || ||| ||||||| ||||| || || | | ||||| ||| | | Sbjct 1792 CTTTATTGTTACTGTGGAGTCCTGAAGTACAAGGAGATTTTACTTGTTGGTGTCAATTGG 1851 Query 165433 GGGGACTCTGGACTTTTGTGGCGCTCCACGGAGCCTTTGCACTTATAGGTTTCATG 165488 |||| || |||||||| || || || || || | || | ||| |||||||||||| Sbjct 1852 GGGGTCTGTGGACTTTGGTTGCTCTGCATGGCACTTTCGGACTAATAGGTTTCATG 1907 >seq110392 Length=2942 Score = 95.1 bits (104), Expect = 1e-14 Identities = 165/235 (70%), Gaps = 5/235 (2%) Strand=Plus/Minus Query 165165 GACGACTGGCTTAAAAGAGACCGTTTCGTTTTTGTTGGCTGGTCTGGACTTCTTCTTTTT 165224 || |||||| | ||| | || |||||||||||| | |||| |||| || | || | | Sbjct 536 GATGACTGGTTACGAAGGGGCCATTTCGTTTTTGTAGCCTGGCCTGGCCTATTGCTCTCT 477 Query 165225 CCCACTGCTTATCTTGCTCTTGGGGGTTGGCTTACTGGGACTACTTTCGTCACGAGTTGG 165284 || ||| ||| ||| | | ||||||||| | || | || || || || || ||| Sbjct 476 CCTTGTGCCTATTTTG-TGTAGGGGGTTGGTTCACAAGTACAACCTTTGTAACTTCATGG 418 Query 165285 TATACTCACGGACTTGCGAGTTCCTATCTTGAGGG-TGCAAACTTTCTTA-CTGCGGCAG 165342 ||||| || ||| | |||||||||||| | || || || || ||||||| | | |||| Sbjct 417 TATACCCATGGATTGGCGAGTTCCTATTTGGAAGGCTGTAA--TTTCTTAACAACCGCAG 360 Query 165343 TTTCTACTCCAGCAGACGCTATGGGTCATTCTCTTCTGCTTCTATGGGGTCCTGA 165397 |||||||||| || | | | | |||||| | || | || ||| ||||||| Sbjct 359 TTTCTACTCCTGCTAATAGTTTAGTGCATTCTTTATTGTTACTGTGGAGTCCTGA 305 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556804025834760