Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ocimum_20tenuiflorum_20[genbank_20GCA_5F001278415.1_202015-09-02] 121,993 sequences; 332,616,730 total letters Query= NC_031761.1 Length=131855 Score E Sequences producing significant alignments: (Bits) Value seq55416 91.5 1e-13 seq69221 86.0 5e-12 seq82767 82.4 6e-11 >seq55416 Length=9261 Score = 91.5 bits (100), Expect = 1e-13 Identities = 86/110 (78%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 111193 GACAAAGAAGGCGTTCCCGTCGATCAACAAAGGCTTATTTATGCGGGCAAACAATTGGAA 111252 |||||||||||| | || ||||| || ||||| || | ||| || |||||||||||| Sbjct 4043 GACAAAGAAGGCATACCTCCTGATCAGCAGAGGCTAATATTTGCCGGTAAACAATTGGAA 3984 Query 111253 GATTCTAAAACTATGGCCGATTATAATATACAAAAAGAATCTACACTACA 111302 ||| || ||| |||| ||||| ||||| || |||||||| ||||| || Sbjct 3983 GATGGTAGAACCTTGGCAGATTACAATATCCAGAAAGAATCAACACTTCA 3934 >seq69221 Length=10640 Score = 86.0 bits (94), Expect = 5e-12 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 111193 GACAAAGAAGGCGTTCCCGTCGATCAACAAAGGCTTATTTATGCGGGCAAACAATTGGAA 111252 || |||||||| | ||| || || || |||||||| | ||| || |||||| ||||| Sbjct 5878 GATAAAGAAGGTATCCCCCCTGACCAGCAGAGGCTTATATTTGCTGGTAAACAACTGGAA 5937 Query 111253 GATTCTAAAACTATGGCCGATTATAATATACAAAAAGAATCTACACTACA 111302 ||| || |||| |||| || ||||| || ||||||||||| ||||| || Sbjct 5938 GATGGTAGAACTTTGGCAGACTATAACATCCAAAAAGAATCAACACTTCA 5987 >seq82767 Length=6942 Score = 82.4 bits (90), Expect = 6e-11 Identities = 84/110 (76%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 111193 GACAAAGAAGGCGTTCCCGTCGATCAACAAAGGCTTATTTATGCGGGCAAACAATTGGAA 111252 |||||||||||| | || || || || ||||| || | ||| || ||||| |||||| Sbjct 3982 GACAAAGAAGGCATACCTCCTGACCAGCAGAGGCTAATATTTGCTGGTAAACAGTTGGAA 3923 Query 111253 GATTCTAAAACTATGGCCGATTATAATATACAAAAAGAATCTACACTACA 111302 ||| || ||| |||| ||||| ||||| || |||||||| ||||| || Sbjct 3922 GATGGTAGAACCTTGGCAGATTACAATATCCAGAAAGAATCAACACTTCA 3873 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421184055457768