Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ocimum_20tenuiflorum_20[genbank_20GCA_5F001278415.1_202015-09-02] 121,993 sequences; 332,616,730 total letters Query= NC_031935.1 Length=186386 Score E Sequences producing significant alignments: (Bits) Value seq85463 172 7e-38 seq31467 158 1e-33 seq115592 140 4e-28 seq110764 125 9e-24 seq71831 122 1e-22 seq96029 82.4 9e-11 >seq85463 Length=6098 Score = 172 bits (190), Expect = 7e-38 Identities = 212/289 (73%), Gaps = 18/289 (6%) Strand=Plus/Plus Query 178302 TCATGGTTACTTCGGTCGCCTGATCTTCCAATACGCATCCTTCAACAACTCCCGTTCGCT 178361 |||||||||||| || || ||||||||||||| || ||| ||||||| |||||| | Sbjct 4019 TCATGGTTACTTTGGCCGATTGATCTTCCAATATGCTAGTTTCCACAACTCTCGTTCGTT 4078 Query 178362 GCACTTCTTCCTCGCAGCATGGCCTGTTGTCGGTATCTGGTTCACTGCTCTTGGTGTTAG 178421 |||||| |||| || || |||||||| || ||||| |||||||||| || ||| | || Sbjct 4079 ACACTTCGTCCTAGCTGCTTGGCCTGTAGTGGGTATTTGGTTCACTG--CTAGGTATCAG 4136 Query 178422 CACCATGGCATTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCATGGATAGTCAGGG 178481 | |||||| ||||| || || |||||||| || ||| | ||| | | |||||| Sbjct 4137 CGTCATGGCCTTCAATCTAAATGGTTTCAATTTTAACAAATCCGTAGTTGATAGT----- 4191 Query 178482 CAAAGTCCTGAACACCTGGGCAGACGTTCTCAACCGTGCTGGTCTTGGTATGGAAGTCAT 178541 ||||||| || | |||| || | ||||||||||| |||||||| ||||| || Sbjct 4192 CAAAGTC--AAAGTCGTGGGTTGATATCATCAACCGTGCTAACCTTGGTATAGAAGTTAT 4249 Query 178542 GCACGAGCGTAATGCTCACAACTTCCCTCTTGACCTCGCTGCTGCTGAA 178590 || ||||||| || | | |||| ||||| ||||||| |||| Sbjct 4250 GC---------ATGCTCATAAATGCTCTCTAGACCTAGCTGCTGTTGAA 4289 >seq31467 Length=18065 Score = 158 bits (174), Expect = 1e-33 Identities = 177/234 (76%), Gaps = 2/234 (1%) Strand=Plus/Minus Query 178150 GGCGTCGCTGGTGTCTTTGGTGGTTCTCTGTTCAGTGCGATGCACGGTTCTCTGGTTACT 178209 ||||| |||||||| || || || || || |||||||| ||||| ||||| |||| ||| Sbjct 5478 GGCGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACT 5419 Query 178210 TCCTCGCTGGTTCGTG-AAACCACCGAGAACGAAAGTCAGAACTATGGTTACAAGTTCGG 178268 || | | | | ||| | ||||||| || || ||| | || | ||||||| | ||| Sbjct 5418 TC-TAGTTTGATCGGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATCCGG 5360 Query 178269 TCAAGAAGAAGAGACCTACAACATCGTTGCTGCTCATGGTTACTTCGGTCGCCTGATCTT 178328 |||||| ||||| || || || ||||| || |||||||||||||| | || ||||||| Sbjct 5359 TCAAGAGGAAGAAACTTATAATATCGTAGCCGCTCATGGTTACTTTAGACGATTGATCTT 5300 Query 178329 CCAATACGCATCCTTCAACAACTCCCGTTCGCTGCACTTCTTCCTCGCAGCATG 178382 |||||| || ||||||||||| |||||| | |||||||| || || || || Sbjct 5299 CCAATATGCTAGTTTCAACAACTCTCGTTCGTTACACTTCTTTCTAGCTGCTTG 5246 >seq115592 Length=218 Score = 140 bits (154), Expect = 4e-28 Identities = 160/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 179397 GTAGCAGGTATCCTGGGCGGAGCATTGCTTTGTGCCATTCATGGTGCTACAGTAGAGAAC 179456 || || ||| | |||| | || ||||| || || |||||||||||||| ||||| || Sbjct 216 GTTGCTGGTGTATTGGGGGCTGCTTTGCTATGCGCTATTCATGGTGCTACCGTAGAAAAT 157 Query 179457 ACACTCTTTGAAGACAGTGACCAATCAAATACATTCAAGGCATTCGAGCCTACACAAGAA 179516 || | |||||||| |||| ||||||||||| || || | || || |||| Sbjct 156 ACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCTTTTAACCCAACTCAAGCC 97 Query 179517 GAGGAGACCTATTCGATGGTTACTGCCAACCGTTTCTGGTCTCAGATCTTTGGTATCGCC 179576 || || || ||||| ||||| ||||| ||||| || ||||| || |||||||| | || Sbjct 96 GAAGAAACTTATTCCATGGTCACTGCTAACCGCTTTTGGTCCCAAATCTTTGGGGTTGCT 37 Query 179577 TTCAGCAATAAGCGTTGGCTACATTTCTTTATGTT 179611 || |||||| |||||| |||||||||||||||| Sbjct 36 TTTTCCAATAAACGTTGGTTACATTTCTTTATGTT 2 >seq110764 Length=2751 Score = 125 bits (138), Expect = 9e-24 Identities = 92/107 (86%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 178354 CGTTCGCTGCACTTCTTCCTCGCAGCATGGCCTGTTGTCGGTATCTGGTTCACTGCTCTT 178413 |||||| | ||||||||||| || || |||||||| || |||||||||||||||||| | Sbjct 1540 CGTTCGTTACACTTCTTCCTAGCTGCTTGGCCTGTAGTGGGTATCTGGTTCACTGCTTTA 1599 Query 178414 GGTGTTAGCACCATGGCATTCAACCTCAACGGTTTCAACTTCAACCA 178460 ||| | | ||||||||| |||||||| ||||||||||| |||||||| Sbjct 1600 GGTATCAACACCATGGCTTTCAACCTAAACGGTTTCAATTTCAACCA 1646 >seq71831 Length=3823 Score = 122 bits (134), Expect = 1e-22 Identities = 215/308 (70%), Gaps = 4/308 (1%) Strand=Plus/Minus Query 178021 TTCCTTG-TTTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCTATGCCCCTGGGTATCAG 178079 || |||| |||| || | |||||||| ||| | ||| | |||||| || || || Sbjct 975 TTTCTTGATTTACCCAATTGGTCAAGGAAGTTTTTTTGATGGTATGCCTCTAGGAATTTC 916 Query 178080 TGGCACCTTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATCCTGATGCACCCCTT 178139 | | || ||||||| |||| |||| || | || ||||||| ||| || ||| |||| || Sbjct 915 TTGTACTTTCAACTTCATGATTGTATTTTAGGCTGAGCACA-CATTCTTATGTACCCATT 857 Query 178140 CCACATGTTGGGCGTCGCTGGTGTCTTTGGTGGTTCTCTGTTCAGTGCGATGCACGGTTC 178199 || ||||| |||| ||| |||| | | || || || ||||||| ||||| ||||| Sbjct 856 TCATATGTTAAGCGTAGCTAGTGTATACGACGGCTCCCTATTCAGTGTTATGCATGGTTC 797 Query 178200 TCTGGTTACTTCCTCGCTGGTTCGTG-AAACCACCGAGAACGAAAGTCAGAACTATGGTT 178258 ||| ||||| | | | | || | ||||||| || || ||| | || | || | Sbjct 796 CTTGGCAACTTC-TAGTTTGATCAGGTAAACCACAGAAAATGAATCTGCTAATGAAGGAT 738 Query 178259 ACAAGTTCGGTCAAGAAGAAGAGACCTACAACATCGTTGCTGCTCATGGTTACTTCGGTC 178318 ||| || ||||||| |||| || || || |||| | |||||||||||||| || | Sbjct 737 ACAGATTTAGTCAAGAGAAAGAAACTTATAATATCGCATCCGCTCATGGTTACTTTGGCC 678 Query 178319 GCCTGATC 178326 | ||||| Sbjct 677 GATTGATC 670 >seq96029 Length=8464 Score = 82.4 bits (90), Expect = 9e-11 Identities = 162/240 (68%), Gaps = 0/240 (0%) Strand=Plus/Plus Query 178935 GGTTGGCTCACGGGCACAACATTCGTCACCTCGTGGTATACTCACGGGATTGCTTCTTCG 178994 |||||| || | || ||||| || || || || |||||||| || | || ||| Sbjct 1668 GGTTGGTTCGCAGGTACAACTTTTGTAACTTCATGGTATACCCATAAATTAGCAAGTTCC 1727 Query 178995 TATCTTGAGGGATGTAATTTCCTTACTGCTGCTGTATCAACTCCTGCTGACGCTCTCGGA 179054 ||| | || || ||||||||| | || |||| || || | || |||| | | | | Sbjct 1728 TATTTGGAAGGCTGTAATTTCTTAACAACTGCAGTTTCTAGTCTTGCTAATAGTTTAGCG 1787 Query 179055 CATTCCCTACTTCTTCTATGGGGTCCAGAAGCTCAGGGAGATTTCGTCCGCTGGCTCCAA 179114 ||||| || | | || ||| |||| |||| || |||||||| | ||| ||| Sbjct 1788 CATTCTTTATTGTTACTGTGGAGTCCTGAAGTACAAGGAGATTTTACTTGTTGGTGTCAA 1847 Query 179115 CTTGGGGGACTATGGCCTTTTGTGGCGCTCCACGGTGCCTTCGCTCTCATAGGTTTCATG 179174 | ||||| || ||| |||| || || || || || | |||| || |||||||||||| Sbjct 1848 TTGGGGGGTCTGTGGACTTTGGTTGCTCTGCATGGCACTTTCGGACTAATAGGTTTCATG 1907 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595397883696880