Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ocimum_20tenuiflorum_20[genbank_20GCA_5F001278415.1_202015-09-02] 121,993 sequences; 332,616,730 total letters Query= NC_031944.1 Length=185102 Score E Sequences producing significant alignments: (Bits) Value seq115592 154 2e-32 seq31467 136 5e-27 seq85463 134 2e-26 seq110764 107 2e-18 seq42107 87.8 2e-12 seq96029 86.0 7e-12 >seq115592 Length=218 Score = 154 bits (170), Expect = 2e-32 Identities = 162/213 (76%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 171153 GTTGCAGGTATCCTCGGCGGTGCATTGCTTTCTGCAATTCATGGTGTTACAGTAGAGAAT 171212 ||||| ||| | | || | ||| ||||| | || |||||||||| ||| ||||| ||| Sbjct 216 GTTGCTGGTGTATTGGGGGCTGCTTTGCTATGCGCTATTCATGGTGCTACCGTAGAAAAT 157 Query 171213 ACTTTGTATGAAGATGGTGATCAAGCAAACACCTTTAAGGCATTTGACACGACTCAGGAG 171272 ||||| | ||||||||||||| ||||| || || || ||| || | ||||| | Sbjct 156 ACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCTTTTAACCCAACTCAAGCC 97 Query 171273 GAAGAGACATATTCTATGGTCACTGCTAATCGTTTCTGGTCGCAGATTTTTGGTATCGCG 171332 ||||| || ||||| |||||||||||||| || || ||||| || || ||||| | || Sbjct 96 GAAGAAACTTATTCCATGGTCACTGCTAACCGCTTTTGGTCCCAAATCTTTGGGGTTGCT 37 Query 171333 TTCAGCAATAAGCGTTGGTTGCATTTCTTTATG 171365 || |||||| |||||||| |||||||||||| Sbjct 36 TTTTCCAATAAACGTTGGTTACATTTCTTTATG 4 >seq31467 Length=18065 Score = 136 bits (150), Expect = 5e-27 Identities = 170/233 (73%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 169904 GGTGTTGCGGGAGTGTTTGGTGGGTCTCTGTTTAGCGCGATGCACGGTAGCCTCGTCACT 169963 || || || || || || || || || || || || || ||||| ||| | | || ||| Sbjct 5478 GGCGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACT 5419 Query 169964 TCGAGTCTTGTCCGTGAAACCACCGAGAACGAGTCCCAGAACTATGGTTACAAGTTCGGT 170023 || ||| | || | |||||||| || || || || || | ||||||| | |||| Sbjct 5418 TCTAGTTTGATCGGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATCCGGT 5359 Query 170024 CAAGAAGAAGAGACCTACAACATCGTTGCCGCTCACGGTTACTTCGGTCGCCTGATCTTC 170083 ||||| ||||| || || || ||||| |||||||| |||||||| | || |||||||| Sbjct 5358 CAAGAGGAAGAAACTTATAATATCGTAGCCGCTCATGGTTACTTTAGACGATTGATCTTC 5299 Query 170084 CAATACGCTTCCTTCAACAACTCCCGTTCACTGCACTTCTTCCTCGCAGCATG 170136 ||||| ||| ||||||||||| ||||| | |||||||| || || || || Sbjct 5298 CAATATGCTAGTTTCAACAACTCTCGTTCGTTACACTTCTTTCTAGCTGCTTG 5246 >seq85463 Length=6098 Score = 134 bits (148), Expect = 2e-26 Identities = 202/288 (70%), Gaps = 18/288 (6%) Strand=Plus/Plus Query 170056 TCACGGTTACTTCGGTCGCCTGATCTTCCAATACGCTTCCTTCAACAACTCCCGTTCACT 170115 ||| |||||||| || || ||||||||||||| ||| ||| ||||||| ||||| | Sbjct 4019 TCATGGTTACTTTGGCCGATTGATCTTCCAATATGCTAGTTTCCACAACTCTCGTTCGTT 4078 Query 170116 GCACTTCTTCCTCGCAGCATGGCCTGTTGTTGGCATCTGGTTCACCGCTCTTGGTGTCTC 170175 |||||| |||| || || |||||||| || || || |||||||| | || ||| || Sbjct 4079 ACACTTCGTCCTAGCTGCTTGGCCTGTAGTGGGTATTTGGTTCACTG--CTAGGTATCAG 4136 Query 170176 CACGATGGCGTTCAACCTGAACGGTTTCAACTTCAACCAGTCCATCATCGATGGTCAGGG 170235 | ||||| ||||| || || |||||||| || ||| | ||| | | ||| |||| | Sbjct 4137 CGTCATGGCCTTCAATCTAAATGGTTTCAATTTTAACAAATCCGTAGTTGATAGTCAAAG 4196 Query 170236 TCGTGTGCTCAACACCTGGGCAGACGTTCTCAACCGTGCTGGTCTTGGCATGGAAGTGAT 170295 || || | |||| || | ||||||||||| ||||| || ||||| || Sbjct 4197 TC-------AAAGTCGTGGGTTGATATCATCAACCGTGCTAACCTTGGTATAGAAGTTAT 4249 Query 170296 GCACGAGCGTAATGCTCACAACTTCCCTCTCGACCTCGCTGCTGCTGA 170343 || ||||||| || | | |||| ||||| ||||||| ||| Sbjct 4250 GC---------ATGCTCATAAATGCTCTCTAGACCTAGCTGCTGTTGA 4288 >seq110764 Length=2751 Score = 107 bits (118), Expect = 2e-18 Identities = 88/107 (82%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 170108 CGTTCACTGCACTTCTTCCTCGCAGCATGGCCTGTTGTTGGCATCTGGTTCACCGCTCTT 170167 ||||| | ||||||||||| || || |||||||| || || ||||||||||| ||| | Sbjct 1540 CGTTCGTTACACTTCTTCCTAGCTGCTTGGCCTGTAGTGGGTATCTGGTTCACTGCTTTA 1599 Query 170168 GGTGTCTCCACGATGGCGTTCAACCTGAACGGTTTCAACTTCAACCA 170214 ||| || ||| ||||| |||||||| ||||||||||| |||||||| Sbjct 1600 GGTATCAACACCATGGCTTTCAACCTAAACGGTTTCAATTTCAACCA 1646 >seq42107 Length=2384 Score = 87.8 bits (96), Expect = 2e-12 Identities = 83/106 (78%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 169683 TGGGTCGTGAGTGGGAATTGTCCTATCGTCTGGGTATGCGCCCTTGGATCTGTGTTGCTT 169742 |||||||||||||||| | | ||| ||||||||||||||||||| |||||| | Sbjct 1375 TGGGTCGTGAGTGGGAGCTTAGTTTCCGTTTGGGTATGCGCCCTTGGATTGCTGTTGCAT 1434 Query 169743 ACTCTGCTCCCGTTGCGGCAGCCTCCGCTGTTTTCCTGGTCTACCC 169788 | || ||||| ||||| || | ||||||||||| || ||||||| Sbjct 1435 ATTCAGCTCCTGTTGCAGCTGTTACCGCTGTTTTCTTGATCTACCC 1480 >seq96029 Length=8464 Score = 86.0 bits (94), Expect = 7e-12 Identities = 196/294 (67%), Gaps = 1/294 (0%) Strand=Plus/Plus Query 170637 TTTGTGGGCTGGTCTGGACTTCTTCTTTTTCCCACTGCTTATCTTGCAATTGGCGGCTGG 170696 |||| |||||| |||| || | || ||| | ||| ||| |||| || || || ||| Sbjct 1615 TTTGGAGGCTGGACTGGCCTATTACTCTTTACTTGTGCCTATTTTGCTATAGG-GGTTGG 1673 Query 170697 CTTACGGGCACGACATTTGTTACAAGTTGGTACACCCACGGACTTGCAAGTTCGTACCTT 170756 | | || || || ||||| || ||||| ||||| | | |||||||| || | Sbjct 1674 TTCGCAGGTACAACTTTTGTAACTTCATGGTATACCCATAAATTAGCAAGTTCCTATTTG 1733 Query 170757 GAAGGTGCTAATTTCCTTACAGCGGCTGTGTCAACGCCTGCTGATGCTATGGGTCATTCT 170816 ||||| ||||||| | ||| | || || || | | |||| || | | | |||||| Sbjct 1734 GAAGGCTGTAATTTCTTAACAACTGCAGTTTCTAGTCTTGCTAATAGTTTAGCGCATTCT 1793 Query 170817 CTTCTTCTACTTTGGGGTCCTGAGTCTCAGGGGGATTTCCAACGCTGGTTACAACTTGGG 170876 | | |||| ||| ||||||| || || ||||| | |||| ||| | ||| Sbjct 1794 TTATTGTTACTGTGGAGTCCTGAAGTACAAGGAGATTTTACTTGTTGGTGTCAATTGGGG 1853 Query 170877 GGACTCTGGAATTTTGTGGCGCTCCACGGAGCCTTTGCTCTCATAGGTTTCATG 170930 || || |||| ||| || || || || || | || | || |||||||||||| Sbjct 1854 GGTCTGTGGACTTTGGTTGCTCTGCATGGCACTTTCGGACTAATAGGTTTCATG 1907 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 591295349257360