Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ocimum_20tenuiflorum_20[genbank_20GCA_5F001278415.1_202015-09-02] 121,993 sequences; 332,616,730 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq111813 127 2e-24 seq99159 114 1e-20 seq117762 104 2e-17 seq109031 102 8e-17 seq66988 95.1 1e-14 seq70367 93.3 4e-14 seq95628 91.5 1e-13 seq50538 84.2 2e-11 seq109834 82.4 7e-11 >seq111813 Length=4153 Score = 127 bits (140), Expect = 2e-24 Identities = 160/217 (74%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 41647 ACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTC 41706 ||| | ||||||||| || || ||||||||| ||||| ||||||| || || | | Sbjct 1112 ACGCAGCACCAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGCTAGCGTCCAGCC 1171 Query 41707 GTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTT 41766 || ||||||||||| || || |||||||| ||||| ||||||| |||| || ||||| Sbjct 1172 ATCTTCGAGCTGCTTACCCGCAAATATCAGCCGCTGCTGGTCCGGAGGAATGCCTTCCTT 1231 Query 41767 GTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTA 41825 |||| ||| | || |||| || | | | |||||| ||||||||||| || | Sbjct 1232 GTCC-TGAATCTTGGCTTTCACATTGTCAATTGTGTCGGAGCTCTCCACCTCCAAAGTGA 1290 Query 41826 TCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 | || || || |||| ||||| | |||||||||||| Sbjct 1291 TGGTCTTTCCAGTCAAAGTCTTGATGAAAATCTGCAT 1327 >seq99159 Length=5808 Score = 114 bits (126), Expect = 1e-20 Identities = 159/218 (73%), Gaps = 6/218 (3%) Strand=Plus/Plus Query 41648 CGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCG 41707 || ||||||||||| || || |||||||||||| || ||||| | || ||||| | Sbjct 1591 CGCAACACCAGATGAAGAGTCGACTCCTTCTGAATATTGTAGTCCGCTAGAGTGCGTCCA 1650 Query 41708 TCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTG 41767 || |||||||||||||| || || |||| | ||| ||||||| ||| | | |||||| Sbjct 1651 TCCTCGAGCTGCTTGCCAGCAAAAATCAACCTCTGCTGGTCCGGGGGTATCCCTTCCTTG 1710 Query 41768 TCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGA---CTCCACCTCCACCGTT 41824 | | ||| | || |||| || | | | ||| | ||| ||| ||||||| ||| Sbjct 1711 T-CTTGAATCTTAGCTTTCAC-ATTATCAATTGT-GTCCGAACTCTCAACCTCCAGGGTT 1767 Query 41825 ATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || ||||| ||||| || ||||| || || |||||||| Sbjct 1768 ATGGTTTTGCCCGTGAGGGTCTTGACAAAGATCTGCAT 1805 Score = 102 bits (112), Expect = 8e-17 Identities = 162/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || || || | ||||| || || || ||| ||||||||||| || || | Sbjct 2034 GCCACCACGGAGGCGAAGGACCAGGTGGAGAGTAGACTCTTTCTGAATGTTGTAATCAGC 2093 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 || ||||| | || ||||||||||| || || || |||| | ||| ||||| | ||| Sbjct 2094 AAGAGTGCGGCCATCTTCGAGCTGCTTTCCAGCAAAGATCAATCTCTGCTGGTCTGGGGG 2153 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 || || |||||||||| ||| | || || | ||| | | | |||||| ||||| Sbjct 2154 AATGCCCTCCTTGTCC-TGAATCTTGGCCTTAACATTGTCGATGGTGTCGGAACTCTCCA 2212 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 | || | ||| || || || ||||| | ||||| || || || |||||| Sbjct 2213 CTTCGAGCGTGATTGTCTTGCCCGTTAAGGTCTTAACAAAGATTTGCATG 2262 Score = 86.0 bits (94), Expect = 6e-12 Identities = 160/231 (69%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || || || | || || ||||| || ||| ||||| ||||| || || | Sbjct 1351 CCACCACGCAGGCGGAGGACAAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCTGCA 1410 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || | | || || | |||||| || || |||||||| | ||||||||||| || Sbjct 1411 AGAGTCCTTCCATCTTCCAACTGCTTACCAGCAAATATCAGCCTCTGTTGGTCCGGTGGG 1470 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGA---CTC 41811 | | |||||| ||| || | || || | || | | | ||||| ||| ||| Sbjct 1471 ATACCCTCCTTATCC-TGTATCTTCGCCTTCACATTGTCGATTGTGTC---CGAACTCTC 1526 Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||||||| || ||||| || || ||||||||||| || || |||||||| Sbjct 1527 CACCTCCAATGTGATCGTCTTCCCAGTCAGCGTCTTCACAAATATCTGCAT 1577 >seq117762 Length=309 Score = 104 bits (114), Expect = 2e-17 Identities = 164/231 (71%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | |||| ||| || ||| |||||||| ||||| || || | Sbjct 28 CCACCACGGAGACGGAGGACCAAATGGAGGGTGGATTCCTTCTGGATGTTGTAATCAGCC 87 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 | |||||| | || ||||||||||||||||| || |||| | ||| ||||||| |||| Sbjct 88 AAGGTGCGTCCATCCTCGAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCCGGGGGA 147 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTC---GCTCGACTC 41811 | || |||||||||| || | || || | ||| | | | ||||| ||| ||| Sbjct 148 ATGCCCTCCTTGTCC-TGGATCTTGGCCTTGACGTTGTCAATCGTGTCCGAGCT---CTC 203 Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || || | || || || || || || || ||||| ||||| || ||||| Sbjct 204 GACTTCAAGAGTGATGGTCTTGCCGGTAAGGGTCTTGACGAAGATTTGCAT 254 >seq109031 Length=8095 Score = 102 bits (112), Expect = 8e-17 Identities = 170/239 (71%), Gaps = 10/239 (4%) Strand=Plus/Minus Query 41629 ATCACCGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATA 41688 |||| | || || || || || | || || || || || |||||||||||| ||||| Sbjct 538 ATCATCACCACCACGAAGGCGAAGAACAAGGTGGAGAGTCGACTCCTTCTGAATATTATA 479 Query 41689 GTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTC 41748 || | ||||| | | || ||||||||||| || || || || | | ||| ||||| Sbjct 478 ATCAGCAAGGGTCCTTCCATCCTCGAGCTGCTTCCCAGCAAAGATTAACCTCTGCTGGTC 419 Query 41749 CGCGGGAACGCTCTCCTTGTCCATGATTTTTTG-CTTCA-ACGACGACACAGTGTC---G 41803 || |||| || ||||||| | ||| | |||| ||||| | | | | ||||| | Sbjct 418 CGGCGGAATGCCTTCCTTGT-CTTGAATCTTTGCCTTCACATTATCA-ATGGTGTCCGAG 361 Query 41804 CTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || ||||||||||| || ||||| || |||||||| ||||| || || |||||||| Sbjct 360 CT---CTCCACCTCCAAAGTGATCGTCTTCCCCGTCAGAGTCTTCACAAAGATCTGCAT 305 Score = 91.5 bits (100), Expect = 1e-13 Identities = 152/215 (71%), Gaps = 10/215 (5%) Strand=Plus/Minus Query 41653 CACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTC 41712 ||||||||||| || |||||| |||||||| ||||| | | || | | || || Sbjct 286 CACCAGATGCAAAGTCGACTCCTTTTGAATGTTGTAGTCCGCCAAAGTCCTACCATCTTC 227 Query 41713 GAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCAT 41772 ||||| |||||||| || ||||| | ||| ||||||| || | | |||||||||| Sbjct 226 TAGCTGTTTGCCGGCAAAAATCAGCCTCTGCTGGTCCGGTGGGATTCCCTCCTTGTCCTG 167 Query 41773 GATTTTTTGCTTCA-ACGA-CGACACAGTGTC---GCTCGACTCCACCTCCACCGTTATC 41827 || || ||||| | | || | ||||| ||| |||||| |||| ||| ||| Sbjct 166 TATCTTAGCCTTCACATTATCG--ATCGTGTCCGAGCT---CTCCACTTCCAGCGTGATC 112 Query 41828 GTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || || || |||| ||||| || || |||||||| Sbjct 111 GTCTTGCCGGTCAAAGTCTTGACAAAGATCTGCAT 77 >seq66988 Length=1372 Score = 95.1 bits (104), Expect = 1e-14 Identities = 161/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 ||||| || ||||| | || ||||| || || ||||||||||| || || || | Sbjct 142 CCGCCACGGAGACGAAGAACGAGATGAAGAGTCGATTCCTTCTGAATATTGTAATCCGCA 201 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 ||||| || |||| ||||||||||| |||||||| ||||||||||| || || | ||| Sbjct 202 AGGGTTCGTCCGTCTTCGAGCTGCTTTCCGGCGAAGATCAGGCGCTGCTGATCGGGCGGA 261 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | ||||| | | || | || || | ||| | | | || || ||| || Sbjct 262 ATTCCTTCCTTAT-CTTGGATCTTCGCCTTGACGTTGTCGATGGTATCAGAACTCTCGAC 320 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 ||| | || ||||| || || || || || || ||||| |||||||| || Sbjct 321 CTCGAGAGTGATCGTCTTTCCGGTTAGGGTTTTCACGAAGATCTGCATCTT 371 >seq70367 Length=2979 Score = 93.3 bits (102), Expect = 4e-14 Identities = 138/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 41671 CTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 41730 ||| ||||||||||| ||||| | | |||||| | || || |||||||| ||||| || Sbjct 249 CTCTTTCTGAATGTTGTAGTCCGCCAAGGTGCGGCCATCCTCAAGCTGCTTTCCGGCAAA 190 Query 41731 TATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGA 41790 || || | ||| || |||| |||| || ||||||||| ||| || |||| ||| Sbjct 189 GATAAGCCTCTGCTGATCCGGTGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTC-ACGT 131 Query 41791 CGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTA 41849 | | | ||||||| ||| ||||| | || || || || || || || ||||| | Sbjct 130 TGTCAATAGTGTCGGAGCTCTCGACCTCAAGGGTGATGGTCTTCCCTGTAAGGGTCTTGA 71 Query 41850 CGAAAATCTGCAT 41862 | || |||||||| Sbjct 70 CAAAGATCTGCAT 58 >seq95628 Length=1400 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/214 (71%), Gaps = 8/214 (4%) Strand=Plus/Minus Query 41653 CACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTC 41712 ||||| ||||| ||| ||||||||| ||||| || |||| | || || | || || Sbjct 216 CACCAAGTGCAGGGTGGACTCCTTCTGGATGTTGTAATCGGCCAACGTACGACCATCCTC 157 Query 41713 GAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCAT 41772 ||||||||| ||||| || || | | ||| || |||| ||||| | |||||||||| | Sbjct 156 GAGCTGCTTCCCGGCAAAGATTAACCTCTGCTGATCCGGGGGAATCCCCTCCTTGTCC-T 98 Query 41773 GATTTTTTGCTTCAACGACGAC-ACAGTGTC---GCTCGACTCCACCTCCACCGTTATCG 41828 || | || || | || | | | ||||| ||| || ||||||| || || | Sbjct 97 GAATCTTCGCCTTCACATTGTCGATCGTGTCAGAGCT---TTCAACCTCCAAGGTGATGG 41 Query 41829 TTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 | || || ||||| ||||| ||||| || ||||| Sbjct 40 TCTTCCCGGTCAGTGTCTTGACGAAGATTTGCAT 7 Score = 91.5 bits (100), Expect = 1e-13 Identities = 162/232 (70%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || ||||| | || || || || ||| ||| ||||| ||||| ||||| | Sbjct 462 GCCACCACGGAGACGGAGGACAAGGTGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGC 403 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 ||||| | | || || | |||||| || || || |||| | ||| ||||||| || Sbjct 402 AAGGGTCCTTCCATCCTCCAACTGCTTCCCAGCAAAGATCAACCTCTGCTGGTCCGGTGG 343 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGA---CTC 41811 | | |||||||||| ||| | || || | || | || | || | ||| ||| Sbjct 342 GATACCCTCCTTGTCC-TGAATCTTAGCCTTGACATTGTCAATG-GTATC-CGAGCTCTC 286 Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 |||||||| || || || || || ||||| ||||| || |||||||||||| Sbjct 285 CACCTCCAAGGTGATGGTCTTCCCTGTCAGTGTCTTGACAAAAATCTGCATG 234 >seq50538 Length=3911 Score = 84.2 bits (92), Expect = 2e-11 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 41675 TTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATC 41734 |||||||||||||| |||| || || ||| | || || |||||||| |||||||| ||| Sbjct 3051 TTCTGAATGTTATAATCGGCAAGAGTTCGCCCATCTTCAAGCTGCTTTCCGGCGAAAATC 3110 Query 41735 AGGCGCTGTTGGTCCG 41750 || ||||||||||||| Sbjct 3111 AGACGCTGTTGGTCCG 3126 >seq109834 Length=6695 Score = 82.4 bits (90), Expect = 7e-11 Identities = 117/161 (73%), Gaps = 8/161 (5%) Strand=Plus/Plus Query 41706 CGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCT 41765 |||| |||||||||||||||||||| ||||| | ||| ||||||| |||| | ||||| Sbjct 3 CGTCCTCGAGCTGCTTGCCGGCGAAGATCAGCCTCTGCTGGTCCGGAGGAATTCCCTCCT 62 Query 41766 TGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTC---GCTCGACTCCACCTCCACC 41821 ||||| || | || || | ||| | | ||||| ||| ||||||||| | Sbjct 63 TGTCC-TGGATCTTAGCCTTGACGTTATCTATGGTGTCCGAGCT---CTCCACCTCGAGG 118 Query 41822 GTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || || || || || || || || || ||||| |||||||| Sbjct 119 GTGATGGTCTTGCCGGTGAGGGTTTTCACGAAGATCTGCAT 159 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 461599026851600