Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Passiflora_20edulis_20[genbank_20GCA_5F002156105.1_202017-05-22] 234,012 sequences; 165,656,733 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq88759 107 2e-18 seq57780 107 2e-18 seq88758 98.7 1e-15 seq228379 91.5 2e-13 >seq88759 Length=3029 Score = 107 bits (118), Expect = 2e-18 Identities = 146/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 63227 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 63286 ||||| ||||| | |||| || || | |||| | || | |||||||||| ||| ||| Sbjct 1240 CCTCCTTGATCCACATATCGTGCTGTATCATTAAACACACGTAACATTGGAACAATTCCA 1181 Query 63287 TTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTACTAATTGAT 63346 |||||||| |||||||| || ||||| || ||| | ||||| |||||| || || Sbjct 1180 TTGGATGTTCCATTGGTTCCACGAATATAACTGCCAGTAGCACGGATATTATGAACAGAA 1121 Query 63347 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 63406 | ||| ||||| || || ||| ||| | || || || || |||||||| || Sbjct 1120 ACACCAATTCCTCCAGCAGATTTGCTGATAACAGCACACTCCTTCAAGGTATCATATATT 1061 Query 63407 CCCTCTATACTATCATCCATCATG 63430 || || ||||||||||| ||||| Sbjct 1060 CCTTCAATACTATCATCTTTCATG 1037 Score = 96.9 bits (106), Expect = 4e-15 Identities = 106/141 (75%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 63466 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATT 63525 |||||| |||||||||| ||||||||||| ||||| |||||| | ||| | ||||| Sbjct 889 AGTTCCAGCATTAAATAGAGTAGGAGAAGCATGAGTGAACCATCGCTGAGACATTAGATG 830 Query 63526 GTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAA 63585 || || | |||| | || || ||||| || |||||||| || || || | ||| | Sbjct 829 ATATGTTTTAATAACCGAATCAATATCATCTTTGTGAATTCCAACAGCAACCCTCATCAG 770 Query 63586 CATGTGCTGAGGTCTTTCAAC 63606 |||||| |||||||| || || Sbjct 769 CATGTGTTGAGGTCTCTCTAC 749 >seq57780 Length=6884 Score = 107 bits (118), Expect = 2e-18 Identities = 157/222 (71%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 63226 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 63285 |||||| ||||| | || | ||| ||||||||| | |||| | ||| || | ||| || Sbjct 1210 TCCTCCTTGATCAACATAACGAGCAGTGTTATTAAACACTCGAAGCATGGGGACAATGCC 1151 Query 63286 ATTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 63345 || || || ||||| || || ||||| || ||| ||||||| ||||| || || Sbjct 1150 ATGTGAAGTCCCATTTGTACCACCAATATAACTGCCAGTGGCACGGATATTGTGGATGGA 1091 Query 63346 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 63405 ||||||||||| || || ||| || | || ||| | || ||||||||||| Sbjct 1090 AAGACCTATTCCTCCGGCTGATTTGCTTATAACAGCACATTCCCTCAAAGTATCATAGAT 1031 Query 63406 GCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCT 63447 || || ||||||||||| ||||| || |||||||| || Sbjct 1030 TCCTTCAATACTATCATCTTTCATGCACAGGAGAAAACAACT 989 >seq88758 Length=3554 Score = 98.7 bits (108), Expect = 1e-15 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 63227 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 63286 ||||| ||||| | || | || |||| ||| | || | |||||||||| ||| ||| Sbjct 1351 CCTCCTTGATCAACATAACGTGCTGTGTCATTGAACACACGTAACATTGGAACAATGCCA 1292 Query 63287 TTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTACTAATTGAT 63346 |||||||| || || || || ||||| || || ||||||| |||||| || ||| Sbjct 1291 TTGGATGTTCCGTTAGTTCCACGAATATAACTGCCCGTGGCACGGATATTATGAACTGAA 1232 Query 63347 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 63406 | ||| ||||| || || ||| ||| | || || || || |||||||| || Sbjct 1231 ACACCAATTCCTCCAGCTGATTTGCTGATAACGGCACACTCCTTCAAGGTATCATATATA 1172 Query 63407 CCCTCTATACTATCATCCATCATG 63430 || || ||||||||||| ||||| Sbjct 1171 CCATCGATACTATCATCTTTCATG 1148 >seq228379 Length=361 Score = 91.5 bits (100), Expect = 2e-13 Identities = 197/292 (67%), Gaps = 2/292 (1%) Strand=Plus/Minus Query 32946 AGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAA-GCATCT 33004 || || ||||| || || || ||||| || ||||| || || || || || || ||| | Sbjct 315 AGGCTGTACATCTCGGAGTGGATGTTCTCGATGGCGATCTGGAAGCCATAAAAAGCA-CG 257 Query 33005 AGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCC 33064 ||||| | | ||| || || | || | | |||| |||||| || ||||| Sbjct 256 CGCCTCCGCCACCTGAACCTCCTTCATGAAGCTGCCGGCTAGGTTTTCAAGAACGATTCC 197 Query 33065 GTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAG 33124 ||| ||| || || || |||| ||||| || |||| || |||||||||||||| Sbjct 196 GTCGGAGGCGGCGAAGAAGGCCAGCACATGAGAAATGAAATGCTTCTCGTCTGGTGTTAG 137 Query 33125 TTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGC 33184 | ||| | | || ||| | || | |||||| || || ||||||| || || || Sbjct 136 CGCTTCCCAGTGACGGAGATCCTGGGAGAGATCCACCTCCTCGGCTGTCCAGAAGGAGGC 77 Query 33185 CTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATA 33236 |||||| || || ||||| | ||| || || | || || || || || ||| Sbjct 76 CTCTGCTTTCTTGTACATTTCCCAAATCTCGGGGTACTGGATCGGGAACATA 25 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 631778531355200