Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Passiflora_20edulis_20[genbank_20GCA_5F002156105.1_202017-05-22]
234,012 sequences; 165,656,733 total letters
Query= NC_021247.1
Length=228750
Score E
Sequences producing significant alignments: (Bits) Value
seq76495 122 1e-22
seq143273 95.1 2e-14
seq215049 89.7 8e-13
seq30058 84.2 3e-11
>seq76495
Length=1287
Score = 122 bits (134), Expect = 1e-22
Identities = 121/157 (77%), Gaps = 0/157 (0%)
Strand=Plus/Plus
Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881
|||||| |||||| |||| || ||||||| ||||| ||||| || || || || ||
Sbjct 425 AATGCAGATATTTGTTAAGACGCTGACTGGGAAAACCATTACCTTGGAGGTGGAGAGCTC 484
Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941
||||| |||| || |||||| |||||| ||||| || |||||||| || ||||| ||
Sbjct 485 TGATACTATTGATAATGTGAAAGCTAAAATCCAAGACAAGGAAGGCATTCCCCCAGACCA 544
Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGAT 155978
|| || ||||| | ||| ||||||||||| || |||
Sbjct 545 GCAGAGGTTGATCTTTGCTGGTAAGCAGCTGGAGGAT 581
>seq143273
Length=304
Score = 95.1 bits (104), Expect = 2e-14
Identities = 115/157 (73%), Gaps = 0/157 (0%)
Strand=Plus/Plus
Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881
|||||| || ||| | || || ||||||| ||||| ||||| || || || ||| ||
Sbjct 85 AATGCAGATCTTTGTGAAGACTCTGACTGGTAAAACCATTACGTTGGAGGTTGAAAGCTC 144
Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941
|||| |||| || ||||| ||||| ||||| || ||||| || || || || ||
Sbjct 145 GGATACTATTGATAATGTGAAGGCCAAAATCCAAGACAAGGAAGGTATTCCCCCGGACCA 204
Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGAT 155978
|||||| |||| | || ||||||||||| || |||
Sbjct 205 GCAAAGACTGATCTTCGCTGGTAAGCAGCTAGAGGAT 241
>seq215049
Length=488
Score = 89.7 bits (98), Expect = 8e-13
Identities = 145/209 (69%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882
|||||||| ||| | || || | || |||||||||||||| || || || || |||
Sbjct 218 ATGCAAATTTTTGTGAAGACCCTCACGGGAAAAACTATTACGTTGGAGGTTGAGAGTTCA 159
Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942
|||| ||| || ||||| || || || ||||| || ||||| || ||||| |||
Sbjct 158 GATACAATTGATAATGTGAAGGCAAAGATCCAGGATAAGGAGGGCATTCCACCAGATCAA 99
Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002
|||||| | || | ||| || ||||| || || ||| | | || | | || || |||
Sbjct 98 CAAAGACTTATCTTTGCTGGGAAGCAACTTGAGGATGGCCGCACACTTGCGGACTACAAT 39
Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGT 156031
|| || ||| | || || ||||| ||
Sbjct 38 ATTCAGAAGGAGTCTACTCTCCATTTGGT 10
>seq30058
Length=4835
Score = 84.2 bits (92), Expect = 3e-11
Identities = 112/156 (72%), Gaps = 0/156 (0%)
Strand=Plus/Minus
Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882
|||||||||||| | ||||| | || ||||| ||||| || | ||||| ||| |||
Sbjct 162 ATGCAAATATTTGTGAAAACTCTTACCGGAAAGACTATAACCCTTGAAGTGGAAAGTTCC 103
Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942
|| | ||| || || || ||| || || || || || || || || ||||| |||
Sbjct 102 GACACCATTGACAATGTAAAGGCTAAGATCCAGGACAAGGAGGGTATTCCCCCAGATCAA 43
Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGAT 155978
||||| | || | |||||| ||||| || ||||||
Sbjct 42 CAAAGGCTCATCTTTGCCGGCAAGCAACTTGAAGAT 7
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 729731164619200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |