Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Penstemon_20centranthifolius_20[genbank_20GCA_5F000737435.1_202014- 08-04] 6,761 sequences; 4,471,593 total letters Query= NC_006883.2 Length=252401 Score E Sequences producing significant alignments: (Bits) Value seq131 511 8e-140 seq5 475 6e-129 >seq131 Length=2205 Score = 511 bits (566), Expect = 8e-140 Identities = 680/942 (72%), Gaps = 2/942 (0%) Strand=Plus/Minus Query 211612 GGTTGGTTTGGTGTTCTTATGATCCCATGTCTTCTAG-CTGCAACAACATGCTTTATCGT 211670 || |||||||||||| | |||||||| | ||| | | | ||||| | ||||| | Sbjct 1288 GGATGGTTTGGTGTTTTGATGATCCC-TACCTTATTGACCGCAACTTCTGTGTTTATTAT 1230 Query 211671 AGCATTCATCGCAGCACCTCCCGTTGATATCGACGGAATCCGTGAACCAGTAGCTGGTTC 211730 || ||||| || || ||||| || ||||| || || || |||||||| || |||| || Sbjct 1229 TGCCTTCATTGCCGCTCCTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATC 1170 Query 211731 ATTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCTTCAAACGCAATCGG 211790 | | || || ||||| || ||||| ||||| || |||| |||| || ||||| Sbjct 1169 TCTACTTTACGGAAACAATATTATCTCAGGTGCCATTATTCCTACTTCTGCAGCTATCGG 1110 Query 211791 TTTACACTTCTATCCTATCTGGGAAGCAGCAACTCTTGATGAGTGGCTCTACAATGGTGG 211850 ||| ||||| ||||| || |||||||||||| | ||||||| ||| | ||||||||||| Sbjct 1109 TTTGCACTTTTATCCAATTTGGGAAGCAGCATCCGTTGATGAATGGTTATACAATGGTGG 1050 Query 211851 TCCTTACCAGTTGGTAATCTTCCACTTCCTTATCGGAATCTCAGCATACATGGGAAGACA 211910 |||||| | | | | | |||||| | | || | | |||||||| | | Sbjct 1049 TCCTTATGAACTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGA 990 Query 211911 GTGGGAACTTTCATACCGTTTAGGTATGCGTCCTTGGATCTGTGTTGCTTATTCAGCACC 211970 |||||| ||| | |||| | |||||||| |||||||| |||||| |||||||| || Sbjct 989 GTGGGAGCTTAGTTTCCGTCTGGGTATGCGACCTTGGATTGCTGTTGCATATTCAGCTCC 930 Query 211971 TGTATCAGCAGCTTTCGCTGTATTCCTTGTTTACCCATTCGGTCAGGGTTCATTCTCAGA 212030 ||| |||| ||| |||||| ||| | | |||||| | ||||| || || || || Sbjct 929 TGTTGCAGCTGCTACCGCTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGTTTTTCTGA 870 Query 212031 CGGTATGCCTTTAGGTATATCAGGAACATTCAACTTCATGTTCGTATTCCAAGCAGAACA 212090 ||||||||| |||| || || || || |||||||||||| | |||||||| || || || Sbjct 869 TGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCA 810 Query 212091 TAACATCCTTATGCACCCATTCCATATGGCAGGTGTTGCAGGTATGTTCGGTGGAGCATT 212150 |||||||||||||| ||||| || ||| ||| || || ||| | ||||| || | | Sbjct 809 CAACATCCTTATGCATCCATTTCACATGTTAGGCGTAGCTGGTGTATTCGGCGGTTCCCT 750 Query 212151 ATTCTCTGCTATGCACGGTTCTCTTGTTACATCTTCACTTATCCGTGAAACCACTGGTTT 212210 |||| ||||||||| ||||| | || || ||| | ||| | |||||||| | Sbjct 749 ATTCAGTGCTATGCATGGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAA 690 Query 212211 AGATTCACAGAACTATGGTTACAAGTTCGGACAAGAAGAAGAGACATATAACATCGTTGC 212270 || || || | ||||||| ||||| ||||| ||||| || ||||| ||||| || Sbjct 689 TGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGC 630 Query 212271 TGCACATGGATACTTCGGTAGACTTATCTTCCAGTATGCATCATTCAACAACAGCAGAAG 212330 || ||||| || || || || | |||||||| ||||| ||||||||| | Sbjct 629 CGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAACTCGCGTTC 570 Query 212331 TTTACACTTCTTCCTCGCATCATGGCCTGTTATCTGTGTATGGTTAACCTCTATGGGTAT 212390 |||||||||||||| || | |||||||| | || | ||||| || || | ||||| Sbjct 569 GTTACACTTCTTCCTAGCTGCTTGGCCTGTAGTGGGTATCTGGTTCACTGCTTTAGGTAT 510 Query 212391 CTGCACAATGGCATTCAACCTAAATGGATTCAACTTCAACCAATCAGTTGTTGATGCATC 212450 | | || |||||||||||||||||||| ||||| || |||||||| || |||||| Sbjct 509 CAGTACTATGGCATTCAACCTAAATGGTTTCAATTTTAACCAATCTGTAGTTGATAGCCA 450 Query 212451 AGGTAAGGTTGTTCCTACTTGGGGTGATGTTCTTAACAGAGCAAACCTTGGTATGGAAGT 212510 ||| || || |||||||| |||| || | ||| | || ||||| ||||||||||| Sbjct 449 AGGCCGTGTAATTAATACTTGGGCTGATATTATCAACCGTGCTAACCTGGGTATGGAAGT 390 Query 212511 TATGCACGAAAGAAATGCACACAACTTCCCACTTGACTTAGC 212552 |||||| ||| | ||||| || |||||||| || || |||| Sbjct 389 TATGCATGAACGTAATGCTCATAACTTCCCTCTAGATCTAGC 348 >seq5 Length=20976 Score = 475 bits (526), Expect = 6e-129 Identities = 672/939 (72%), Gaps = 4/939 (0%) Strand=Plus/Plus Query 211570 TTCTGCGACTGGGTAAC-ATCAACAAACAACAGAATCTATGTTGGTTGGTTTGGTGTTCT 211628 ||||| ||||| |||| | || | || ||| | | || |||| ||||| |||||| | Sbjct 474 TTCTGTAACTGGATAACCAGCACCGAA-AACCGTCTTTACATTGGATGGTTCGGTGTTTT 532 Query 211629 TATGATCCCATGTCTTCTAG-CTGCAACAACATGCTTTATCGTAGCATTCATCGCAGCAC 211687 |||||||| | ||| | | | ||||| | ||||| | || ||||| || || | Sbjct 533 GATGATCCC-TACCTTATTGACCGCAACTTCGGTATTTATTATTGCCTTCATTGCTGCTC 591 Query 211688 CTCCCGTTGATATCGACGGAATCCGTGAACCAGTAGCTGGTTCATTCATGTATGGTAACA 211747 |||| || ||||| || || || |||||||| || |||| || | | || || |||| Sbjct 592 CTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTACGGAAACA 651 Query 211748 ACATCATCTCTGGTGCAGTTGTTCCATCTTCAAACGCAATCGGTTTACACTTCTATCCTA 211807 | || |||| ||||| || |||| |||| || |||||||| ||||| || || | Sbjct 652 ATATTCTCTCAGGTGCCATTATTCCTACTTCTGCAGCTATCGGTTTGCACTTTTACCCAA 711 Query 211808 TCTGGGAAGCAGCAACTCTTGATGAGTGGCTCTACAATGGTGGTCCTTACCAGTTGGTAA 211867 |||||||||||||| | ||||||| ||| | ||||| ||||||||||| | | | Sbjct 712 TCTGGGAAGCAGCATCCGTTGATGAATGGTTATACAACGGTGGTCCTTATGAACTAATTG 771 Query 211868 TCTTCCACTTCCTTATCGGAATCTCAGCATACATGGGAAGACAGTGGGAACTTTCATACC 211927 | | |||||| | | || | | | |||||||| | ||||||||||| | || Sbjct 772 TTCTACACTTCTTACTTGGTGTAGCTTCTTACATGGGTCGTGAGTGGGAACTTAGTTTCC 831 Query 211928 GTTTAGGTATGCGTCCTTGGATCTGTGTTGCTTATTCAGCACCTGTATCAGCAGCTTTCG 211987 || | |||||||| |||||||| |||||| ||||| || ||||| |||| ||| || Sbjct 832 GTCTGGGTATGCGACCTTGGATTGCTGTTGCATATTCCGCTCCTGTTGCAGCTGCTACCG 891 Query 211988 CTGTATTCCTTGTTTACCCATTCGGTCAGGGTTCATTCTCAGACGGTATGCCTTTAGGTA 212047 |||| ||| | | |||||| ||||||| || || || || ||||||||| |||| | Sbjct 892 CTGTTTTCTTGATCTACCCAATCGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAA 951 Query 212048 TATCAGGAACATTCAACTTCATGTTCGTATTCCAAGCAGAACATAACATCCTTATGCACC 212107 | | || || |||||||||||| | |||||||| || || || |||||||||||||||| Sbjct 952 TTTATGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACC 1011 Query 212108 CATTCCATATGGCAGGTGTTGCAGGTATGTTCGGTGGAGCATTATTCTCTGCTATGCACG 212167 |||| || ||| ||| || || ||| | ||||| || | ||||| ||||||||| | Sbjct 1012 CATTTCACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATG 1071 Query 212168 GTTCTCTTGTTACATCTTCACTTATCCGTGAAACCACTGGTTTAGATTCACAGAACTATG 212227 |||| | || || ||| | ||| | |||||||| | || || || | | Sbjct 1072 GTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAG 1131 Query 212228 GTTACAAGTTCGGACAAGAAGAAGAGACATATAACATCGTTGCTGCACATGGATACTTCG 212287 |||| | ||||| ||||| ||||| || ||||| ||||| || || ||||| || || | Sbjct 1132 GTTAGAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCCGCTCATGGTTATTTTG 1191 Query 212288 GTAGACTTATCTTCCAGTATGCATCATTCAACAACAGCAGAAGTTTACACTTCTTCCTCG 212347 | || | |||||||| ||||| ||||||||| | |||||||||||||| | Sbjct 1192 GCCGATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCGTTACACTTCTTCCTAG 1251 Query 212348 CATCATGGCCTGTTATCTGTGTATGGTTAACCTCTATGGGTATCTGCACAATGGCATTCA 212407 | | |||||||| | || | ||||| || || | |||||| |||| |||||||||| Sbjct 1252 CTGCTTGGCCTGTAGTGGGTATCTGGTTCACTGCTTTAGGTATCAGCACTATGGCATTCA 1311 Query 212408 ACCTAAATGGATTCAACTTCAACCAATCAGTTGTTGATGCATCAGGTAAGGTTGTTCCTA 212467 |||||||||| ||||| ||||||||||| || |||||| ||| || || || Sbjct 1312 ACCTAAATGGCTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGCCGTGTAATTAATA 1371 Query 212468 CTTGGGGTGATGTTCTTAACAGAGCAAACCTTGGTATGG 212506 |||||| |||| | | ||| | || ||||||||||||| Sbjct 1372 CTTGGGCTGATATCATCAACCGTGCTAACCTTGGTATGG 1410 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 807486951491160