Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Penstemon_20centranthifolius_20[genbank_20GCA_5F000737435.1_202014- 08-04] 6,761 sequences; 4,471,593 total letters Query= NC_013085.1 Length=194454 Score E Sequences producing significant alignments: (Bits) Value seq131 684 0.0 seq5 652 0.0 seq21 572 2e-158 >seq131 Length=2205 Score = 684 bits (758), Expect = 0.0 Identities = 749/993 (75%), Gaps = 2/993 (0%) Strand=Plus/Plus Query 7529 TCAGCAGCAGCAAGGTCAAGAGGGAAGTTGTGAGCATTACGCTCGTGCATGACTTCCATG 7588 ||| ||||||| || || ||||||||||| ||||||||||| || ||||| |||||||| Sbjct 339 TCAACAGCAGCTAGATCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATA 398 Query 7589 CCAAGACCAGCACGGTTGAGCACGTCTGCCCAGGTGTTCAGGACACGACCTTGACCATCA 7648 || || ||||||||||| | || ||||| || || | ||||| ||||| | |||| Sbjct 399 CCCAGGTTAGCACGGTTGATAATATCAGCCCAAGTATTAATTACACGGCCTTGGCTATCA 458 Query 7649 ATGATGGACTGGTTGAAGTTGAAACCGTTGAGGTTGAATGCCATGGTGCTAACACCAAGA 7708 | | || ||||| || |||||||| || |||||||||||||| || || | ||| | | Sbjct 459 ACTACAGATTGGTTAAAATTGAAACCATTTAGGTTGAATGCCATAGTACTGATACCTAAA 518 Query 7709 GCAGTGAACCAGATGCCAACAACTGGCCATGCTGCGAGGAAGAAGTGCAGCGAACGGGAG 7768 |||||||||||||| || || || ||||| || || ||||||||||| | |||||| ||| Sbjct 519 GCAGTGAACCAGATACCCACTACAGGCCAAGCAGCTAGGAAGAAGTGTAACGAACGCGAG 578 Query 7769 TTGTTGAACGAAGCGTATTGGAAGATCAGACGACCAAAGTATCCGTGAGCAGCAACGATG 7828 |||||||| ||| ||||||||||||| || ||||| || || ||||| || ||||| Sbjct 579 TTGTTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCGGCTACGATA 638 Query 7829 TTGTAGGTCTCTTCTTCTTGACCGAACTTATAACCATAGTTCTGGGACTCAGACTCAGTG 7888 || || || ||||| ||||||||||| | ||||| | || || ||| || ||| Sbjct 639 TTATAAGTTTCTTCCTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTG 698 Query 7889 GTTTCACGAACCAGAGAAGAGGTTACAAGCGAACCATGCATCGCACTGAACAGAGAACCA 7948 ||||| | | || | ||| ||||| | ||||||||||| |||||||| || ||||| Sbjct 699 GTTTCCCTGATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTGAATAGGGAACCG 758 Query 7949 CCAAAGACACCAGCGACGCCCAGCATGTGGAAGGGGTGCATCAGGATGTTGTGCTCTGCT 8008 || || |||||||| ||||| | |||||| || || ||||| |||||||||||||| || Sbjct 759 CCGAATACACCAGCTACGCCTAACATGTGAAATGGATGCATAAGGATGTTGTGCTCAGCC 818 Query 8009 TGGAAGACAAGCATGTAGTTGAACGTACCAGAGATGCCAAGAGGCATAGCGTCAGAGAAA 8068 ||||| |||| |||| ||||||| |||||||| || || ||||||||| | ||||| ||| Sbjct 819 TGGAATACAATCATGAAGTTGAAAGTACCAGAAATTCCTAGAGGCATACCATCAGAAAAA 878 Query 8069 GAACCTTGACCGAAAGGATAGACGAGGAATACAGCAGATGCTGCAGCAACTGGAGCAGAG 8128 |||||||| | || |||| | ||| ||||| | || || ||||| ||||| || Sbjct 879 CTTCCTTGACCAATTGGGTAGATCAAGAAAACAGCGGTAGCAGCTGCAACAGGAGCTGAA 938 Query 8129 TATGCTACACAGATCCAGGGACGCATACCTAGACGGTAAGAAAGTTCCCACTCACGACCC 8188 ||||| ||| ||||| || |||||||| |||||| || ||| ||||||||||||||| Sbjct 939 TATGCAACAGCAATCCAAGGTCGCATACCCAGACGGAAACTAAGCTCCCACTCACGACCC 998 Query 8189 ATGTATGCATAGATACCGATCAGGAAGTGGAAGATAACGAGTTGGAAAGGACCACCGTTG 8248 ||||| | | ||| | | |||||| | | || |||| |||||||||| ||| Sbjct 999 ATGTAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGGACCACCATTG 1058 Query 8249 TAGAGCCACTCATCAAGAGAAGCTGCTTCCCAGATGGGATAGAAGTGGAGACCAATAGCG 8308 || | ||| ||||||| || ||||||||||| || ||||| ||||| | ||| ||||| Sbjct 1059 TATAACCATTCATCAACGGATGCTGCTTCCCAAATTGGATAAAAGTGCAAACCGATAGCT 1118 Query 8309 TTAGAAGAAGGAACAACAGCACCAGAGATGATGTTGTTGCCATACATGAGCGAACCAGCG 8368 ||||| ||||| || ||||| ||||| || ||||| || || | || || |||| Sbjct 1119 GCAGAAGTAGGAATAATGGCACCTGAGATAATATTGTTTCCGTAAAGTAGAGATCCAGAA 1178 Query 8369 ACGGGTTCACGGATGCCGTCAATGTCCACAGGAGGAGCAGCGACGAAAGCGACGATGAAA 8428 || |||||||| || || ||||| || || |||||||| || | ||| || | || ||| Sbjct 1179 ACAGGTTCACGAATACCATCAATATCTACTGGAGGAGCGGCAATGAAGGCAATAAT-AAA 1237 Query 8429 CA-AATAGCAGCAGCGAGCAGCGTAGGAATCATCAGGACACCGAACCAACCGACATACAG 8487 || | || || | | | ||||| ||||||| ||||| ||||| |||| || || Sbjct 1238 CACAGAAGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCAAACCATCCGATGTAAAG 1297 Query 8488 ACGATTGTTGGTGGAGGTTACCCAGTTACAGAA 8520 ||| || | ||| |||| |||||||||||| Sbjct 1298 ACGGTTTTCGGTACTAGTTATCCAGTTACAGAA 1330 >seq5 Length=20976 Score = 652 bits (722), Expect = 0.0 Identities = 709/938 (76%), Gaps = 2/938 (0%) Strand=Plus/Minus Query 7584 CCATGCCAAGACCAGCACGGTTGAGCACGTCTGCCCAGGTGTTCAGGACACGACCTTGAC 7643 |||| ||||| ||||||||||| | || ||||| || || | ||||| ||||||| Sbjct 1410 CCATACCAAGGTTAGCACGGTTGATGATATCAGCCCAAGTATTAATTACACGGCCTTGAC 1351 Query 7644 CATCAATGATGGACTGGTTGAAGTTGAAACCGTTGAGGTTGAATGCCATGGTGCTAACAC 7703 ||||| | || |||||||| ||||| || || |||||||||||||| ||||| | || Sbjct 1350 TATCAACTACAGATTGGTTGAAATTGAAGCCATTTAGGTTGAATGCCATAGTGCTGATAC 1291 Query 7704 CAAGAGCAGTGAACCAGATGCCAACAACTGGCCATGCTGCGAGGAAGAAGTGCAGCGAAC 7763 | | ||||||||||||||| || || || ||||| || || ||||||||||| | ||||| Sbjct 1290 CTAAAGCAGTGAACCAGATACCCACTACAGGCCAAGCAGCTAGGAAGAAGTGTAACGAAC 1231 Query 7764 GGGAGTTGTTGAACGAAGCGTATTGGAAGATCAGACGACCAAAGTATCCGTGAGCAGCAA 7823 | ||||||||||| ||| ||||||||||||| || ||||| || || ||||| || | Sbjct 1230 GAGAGTTGTTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCGGCTA 1171 Query 7824 CGATGTTGTAGGTCTCTTCTTCTTGACCGAACTTATAACCATAGTTCTGGGACTCAGACT 7883 |||| || || || ||||| ||||||||||| | ||||| | || || ||| | Sbjct 1170 CGATATTATAAGTTTCTTCCTCTTGACCGAATCTCTAACCTTCATTAGCAGATTCATTTT 1111 Query 7884 CAGTGGTTTCACGAACCAGAGAAGAGGTTACAAGCGAACCATGCATCGCACTGAACAGAG 7943 | |||||||| | | || | ||| ||||| | ||||||||||| |||||||| || | Sbjct 1110 CTGTGGTTTCCCTGATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTGAATAGGG 1051 Query 7944 AACCACCAAAGACACCAGCGACGCCCAGCATGTGGAAGGGGTGCATCAGGATGTTGTGCT 8003 | || || || |||||||| ||||| | |||||| || |||||||| ||||||||||||| Sbjct 1050 AGCCGCCGAATACACCAGCTACGCCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCT 991 Query 8004 CTGCTTGGAAGACAAGCATGTAGTTGAACGTACCAGAGATGCCAAGAGGCATAGCGTCAG 8063 | || ||||| |||| |||| ||||||| |||||| | || || ||||||||| | |||| Sbjct 990 CAGCCTGGAATACAATCATGAAGTTGAAAGTACCATAAATTCCTAGAGGCATACCATCAG 931 Query 8064 AGAAAGAACCTTGACCGAAAGGATAGACGAGGAATACAGCAGATGCTGCAGCAACTGGAG 8123 | ||| |||||||||| || |||| | ||| ||||| | || || ||||| |||| Sbjct 930 AAAAACTTCCTTGACCGATTGGGTAGATCAAGAAAACAGCGGTAGCAGCTGCAACAGGAG 871 Query 8124 CAGAGTATGCTACACAGATCCAGGGACGCATACCTAGACGGTAAGAAAGTTCCCACTCAC 8183 | || ||||| ||| ||||| || |||||||| |||||| || |||||||||||||| Sbjct 870 CGGAATATGCAACAGCAATCCAAGGTCGCATACCCAGACGGAAACTAAGTTCCCACTCAC 811 Query 8184 GACCCATGTATGCATAGATACCGATCAGGAAGTGGAAGATAACGAGTTGGAAAGGACCAC 8243 |||||||||| | | | ||| | | |||||| | | || |||| ||||||||| Sbjct 810 GACCCATGTAAGAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGGACCAC 751 Query 8244 CGTTGTAGAGCCACTCATCAAGAGAAGCTGCTTCCCAGATGGGATAGAAGTGGAGACCAA 8303 ||||||| | ||| ||||||| || |||||||||||||| || || ||||| | ||| | Sbjct 750 CGTTGTATAACCATTCATCAACGGATGCTGCTTCCCAGATTGGGTAAAAGTGCAAACCGA 691 Query 8304 TAGCGTTAGAAGAAGGAACAACAGCACCAGAGATGATGTTGTTGCCATACATGAGCGAAC 8363 |||| ||||| ||||| || ||||| |||| || ||||| || || | || || | Sbjct 690 TAGCTGCAGAAGTAGGAATAATGGCACCTGAGAGAATATTGTTTCCGTAAAGTAGAGATC 631 Query 8364 CAGCGACGGGTTCACGGATGCCGTCAATGTCCACAGGAGGAGCAGCGACGAAAGCGACGA 8423 ||| || |||||||| || || ||||| || || ||||||||||| | ||| || | | Sbjct 630 CAGAAACAGGTTCACGAATACCATCAATATCTACTGGAGGAGCAGCAATGAAGGCAATAA 571 Query 8424 TGAA-ACAAATAGCAGCAGCGAGCAGCGTAGGAATCATCAGGACACCGAACCAACCGACA 8482 | || || | || || | | | ||||| ||||||| ||||||||||| || | Sbjct 570 TAAATACCGA-AGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCGAACCATCCAATG 512 Query 8483 TACAGACGATTGTTGGTGGAGGTTACCCAGTTACAGAA 8520 || ||||| || | |||| ||||| |||||||||||| Sbjct 511 TAAAGACGGTTTTCGGTGCTGGTTATCCAGTTACAGAA 474 >seq21 Length=7990 Score = 572 bits (634), Expect = 2e-158 Identities = 737/1014 (73%), Gaps = 2/1014 (0%) Strand=Plus/Minus Query 6263 AGAGCGTTGCCTCTTGGCAATACTTCTTCAGGAAATACAAAGTTTTCATGTGGTTGATCC 6322 |||||||| || | ||| | || || ||||| |||| || ||||||||| || ||||| Sbjct 2056 AGAGCGTTTCCACGTGGTAGAACCTCCTCAGGGAATATAAGGTTTTCATGAGGCTGATCT 1997 Query 6323 ACTGGTGCCATCCAGGCACGTAGACCTTCATTCAATAGGATGTTCTTGGTATAGAACGTC 6382 | |||||||| || || | |||||| || ||||| || || ||||| ||||| ||| Sbjct 1996 TGAGCCGCCATCCAAGCGCGAATACCTTCGTTTAATAGAATATTTTTGGTGTAGAAAGTC 1937 Query 6383 TCGAACTCTGGATCCTCCGCTGCTCTGATCTCTTGTGAAACAAAGTCATAAGCTCTAAGG 6442 || || || ||||| |||||||| | || || || ||||| ||||| || || | ||| Sbjct 1936 TCAAATTCAGGATCTTCCGCTGCGCGAATTTCCTGAGAAACGAAGTCGTAGGCACGTAGG 1877 Query 6443 TTAAGTGCAAGACCAATAATACCAATGCTAGAGGTCCAAAGACCCATAACAGGAACAAAC 6502 || || || | ||| | | |||| | |||| | ||| | || || ||||| Sbjct 1876 TTCAGGGCCAAACCGACTACTCCAAGAGCACTCATCCATAAACCGGTTACTGGTACAAAT 1817 Query 6503 AGCATAAAGAAATGTAGCCAACGCTTATTGCTGAAGGCGATACCAAAGATCTGAGACCAG 6562 | |||||||||||||| |||||| |||||| || || | |||||||| || ||||| Sbjct 1816 AACATAAAGAAATGTAACCAACGTTTATTGGAAAAAGCAACCCCAAAGATTTGGGACCAA 1757 Query 6563 AAACGATTAGCCGTGACCATCGAATAGGTCTCCTCTTCTTGTGTAGGCTCAAACGCCTTG 6622 || || || || |||||||| |||||||| || || |||| || || | ||| || Sbjct 1756 AAGCGGTTCGCAGTGACCATGGAATAGGTTTCTTCCGCTTGAGTTGGGTTAAAAGCACGA 1697 Query 6623 AAAGTATTTGATTGTTCACCATCTTCAAACAAAGTATTCTCTACAGTAGCACCGTGAATA 6682 || ||||||| |||||||||||||| |||||||| |||||||||||||| |||||| Sbjct 1696 AATGTATTTGCACCATCACCATCTTCAAATAAAGTATTTTCTACAGTAGCACCATGAATA 1637 Query 6683 GCACAGAGCAATGCTCCACCTAAGATACCTGCTACACCCATCATATGAAACGGGTTGAGC 6742 || || ||||| || | || || | ||| || || |||||||||||||| ||||| ||| Sbjct 1636 GCGCATAGCAAAGCAGCGCCCAATACACCGGCAACTCCCATCATATGAAATGGGTTCAGC 1577 Query 6743 GTCCAGTTGTGGAAGCCCTGTAGGAAGAGTAAGAAGCGGAATATCGCTGCAACACCAAAC 6802 ||||| || || || || || | ||||| | ||| | ||||| ||||| |||||||| Sbjct 1576 GTCCAATTATGAAATCCTTGAAAAAAGAGGATGAATCTAAATATAGCTGCTACACCAAAA 1517 Query 6803 GACGGCGCAAAGAACCAACTGGACTGTCCGAGAGGATACATGAGAAAGACAGACACAAAG 6862 || ||||||||||||| ||||| || || ||||| || || || ||||| ||||| Sbjct 1516 CTAGGTGCAAAGAACCAACCAGACTGCCCTAGTGGATAAATCAGGAATACAGAAACAAAA 1457 Query 6863 ACAGCAATGGGACCAGAAAACGCGATTGCATTGTAGGGACGAATACCGACTAGA-CGTGC 6921 |||||||| || ||||| || ||||||||||| || || || | | || ||| || || Sbjct 1456 ACAGCAATTGGGCCAGAGAATGCGATTGCATTATAAGGTCGCA-ATTGAACAGATCGGGC 1398 Query 6922 GATCTCAAACTGCCGAAGCATGAAACCTATAAGGGCAAAGGCTCCGTGGAGCGCCACAAA 6981 | |||||| || || | |||||||||||| || |||| || || || || || ||||| Sbjct 1397 AAGCTCAAATTGACGTAACATGAAACCTATTAGTCCAAAAGCGCCATGCAGAGCAACAAA 1338 Query 6982 AGGCCATAGTCCCCCAAGTTGGAGCCAGCGGACGAAATCTCCCTGAGCTTCTGGACCCCA 7041 || ||| || || || | ||| ||| || |||||||| || ||||| |||||||| Sbjct 1337 AGTCCACAGACCGCCTAATTGACACCAACGAGTAAAATCTCCTTGTGCTTCAGGACCCCA 1278 Query 7042 TAGAAGAAGTAGGGAATGTCCGAGAGCGTCAGCAGGAGTTGATACAGCAGCAGTAAGGAA 7101 ||| | | || ||||| | | | | ||||||||| || || || || || | ||| Sbjct 1277 TAGTAACAATAAAGAATGCGCTAAACTATTAGCAGGAGTAGAAACTGCGGCTGTTAAGAA 1218 Query 7102 ATTACATCCCTCAAGATACGAAGAAGCAATCCCGTGAGTGTACCAGCTCGTGACGAAAGT 7161 |||||| || || | ||| ||| || | ||| || || ||||| || || || || Sbjct 1217 ATTACAGCCTTCCAAATAGGAACTGGCCAACCCATGGGTATACCATGAAGTTACAAAGGT 1158 Query 7162 TGTGCCCGTGAGCCAACCGCCCAGTGCCAGGTAAGCAGTAGGGAACAGAAGAAGACCTGA 7221 ||| || |||| |||||| || | || | || ||| ||| || || | ||||| || Sbjct 1157 TGTACCTGTGAACCAACCCCCTAAAGCGAAATAGGCACAAGGAAAGAGCAATAGACCGGA 1098 Query 7222 CCAACCAACAAAAACGAACCTATCACGCTTAAGCCAGTCATCGAGTACATCAAA 7275 |||||| ||||||||||| | || | | | ||||||||| | | |||||| Sbjct 1097 CCAACCTACAAAAACGAAACGGTCCCTCCGTAACCAGTCATCCATAATATCAAA 1044 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622072222677840