Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Penstemon_20centranthifolius_20[genbank_20GCA_5F000737435.1_202014- 08-04] 6,761 sequences; 4,471,593 total letters Query= NC_015279.1 Length=190789 Score E Sequences producing significant alignments: (Bits) Value seq131 634 7e-177 seq5 581 4e-161 seq21 527 8e-145 seq10 91.5 2e-13 seq12 87.8 2e-12 >seq131 Length=2205 Score = 634 bits (702), Expect = 7e-177 Identities = 746/1004 (74%), Gaps = 4/1004 (0%) Strand=Plus/Minus Query 179738 GTGGGATAACTTCTGCGAGTGGGTAACCTCTACCAATAACCGCCTCTATGTCGGTTGGTT 179797 ||||| | |||||| | ||| |||| |||| | ||||| || || |||| ||||| Sbjct 1340 GTGGGGTCGCTTCTGTAACTGGATAACTAGTACCGAAAACCGTCTTTACATCGGATGGTT 1281 Query 179798 CGGCGTTCTGATGATTCCAACTCTGTTGGCAGCAACTATCTGC-TTCATCGTCGCCTTCA 179856 || ||| ||||||| || || | ||| | |||||| |||| || || | ||||||| Sbjct 1280 TGGTGTTTTGATGATCCCTACCTTATTGACCGCAACT-TCTGTGTTTATTATTGCCTTCA 1222 Query 179857 TCGCTGCTCCCCCTGTGGACATCGATGGCATCCGTGAACCCGTCGCTGGTTCACTCATGT 179916 | || ||||| || || || || ||||| || |||||||| || |||| || || | | Sbjct 1221 TTGCCGCTCCTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTT 1162 Query 179917 ATGGTAACAACATCATCTCTGGTGCAGTTGTTCCTTCTTCCAACGCAATTGGTCTTCACT 179976 | || ||||| || ||||| ||||| || ||||| |||| || || ||| | |||| Sbjct 1161 ACGGAAACAATATTATCTCAGGTGCCATTATTCCTACTTCTGCAGCTATCGGTTTGCACT 1102 Query 179977 TCTATCCCATCTGGGAAGCCGCATCGCTTGACGAGTGGCTGTATAACGGTGGTCCTTTCC 180036 | ||||| || |||||||| ||||| |||| || ||| | || || |||||||||| Sbjct 1101 TTTATCCAATTTGGGAAGCAGCATCCGTTGATGAATGGTTATACAATGGTGGTCCTTATG 1042 Query 180037 AACTTGTCGTCTTCCACTTCCTGATTGGCATCTATGCCTACATGGGTCGTGAGTGGGAAC 180096 |||| | || | |||||| | |||| | | |||||||||||||||||||| | Sbjct 1041 AACTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAGC 982 Query 180097 TTTCTTATCGCTTGGGTATGCGCCCCTGGATCTGC-GTAGCATATTCTGCTCCAGTCGCT 180155 || || || |||||||||| || ||||| ||| || |||||||| ||||| || || Sbjct 981 TTAGTTTCCGTCTGGGTATGCGACCTTGGAT-TGCTGTTGCATATTCAGCTCCTGTTGCA 923 Query 180156 GCAGCATCTGCTGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCATTCTCTGACGCAATG 180215 || || | ||||| ||| | |||| || | |||||||| || ||||| | ||| Sbjct 922 GCTGCTACCGCTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGTTTTTCTGATGGTATG 863 Query 180216 CCCCTCGGCATTTCTGGCACCTTCAACTACATGCTTGTTTTCCAAGCAGAGCACAACATC 180275 || || || |||||||| || ||||||| |||| |||| ||||| || |||||||||||| Sbjct 862 CCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATC 803 Query 180276 CTGATGCACCCCTTCCACATGCTGGGAGTAGCAGGTGTCTTCGGCGGTTCACTGTTCTCC 180335 || ||||| || || |||||| | || ||||| ||||| ||||||||||| || ||| Sbjct 802 CTTATGCATCCATTTCACATGTTAGGCGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGT 743 Query 180336 GCAATGCACGGTTCACTGGTTACCTCTTCACTGGTTCGTGAAACCACTGAAACTGAGTCC 180395 || ||||| ||||| |||| || ||| || | | |||||||| |||| ||| || Sbjct 742 GCTATGCATGGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCT 683 Query 180396 CAGAACTACGGTTACAAGTTTGGTCAAGAAGAAGAGACCTACAACATCGTTGCTGCACAT 180455 || | ||||||| || |||||||| ||||| || || || ||||| || || ||| Sbjct 682 GCTAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCCGCTCAT 623 Query 180456 GGATACTTCGGTCGTCTGATCTTCCAGTATGCATCGTTCAACAACTCCCGTTCACTTCAC 180515 || || || || || |||||||||| ||||| ||||||||||| ||||| | ||| Sbjct 622 GGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAACTCGCGTTCGTTACAC 563 Query 180516 TTCTTCCTGGCAGCATGGCCTGTCGTTGGCATCTGGTTCACTGCACTGGGCGTAAGCACC 180575 |||||||| || || |||||||| || || |||||||||||||| | || | || || Sbjct 562 TTCTTCCTAGCTGCTTGGCCTGTAGTGGGTATCTGGTTCACTGCTTTAGGTATCAGTACT 503 Query 180576 ATGGCATTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCATTGATGGTCAAGGTCGT 180635 |||||||||||||| || |||||||| || ||||| || | ||||| | ||||| ||| Sbjct 502 ATGGCATTCAACCTAAATGGTTTCAATTTTAACCAATCTGTAGTTGATAGCCAAGGCCGT 443 Query 180636 GTGCTCAACACTTGGGCAGACGTACTCAACCGCGCTGGTCTGGGTATGGAAGTTATGCAC 180695 || | || |||||||| || | ||||||| ||| |||||||||||||||||||| Sbjct 442 GTAATTAATACTTGGGCTGATATTATCAACCGTGCTAACCTGGGTATGGAAGTTATGCAT 383 Query 180696 GAGCGTAATGCTCACAACTTCCCACTTGACCTGGCAGCTGCTGA 180739 || ||||||||||| |||||||| || || || || |||| ||| Sbjct 382 GAACGTAATGCTCATAACTTCCCTCTAGATCTAGCTGCTGTTGA 339 >seq5 Length=20976 Score = 581 bits (644), Expect = 4e-161 Identities = 696/940 (74%), Gaps = 4/940 (0%) Strand=Plus/Plus Query 179747 CTTCTGCGAGTGGGTAACCTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTTCT 179806 |||||| | ||| ||||| ||| | ||||| || || | || |||||||| ||| | Sbjct 473 CTTCTGTAACTGGATAACCAGCACCGAAAACCGTCTTTACATTGGATGGTTCGGTGTTTT 532 Query 179807 GATGATTCCAACTCTGTTGGCAGCAACTATCTGC-TTCATCGTCGCCTTCATCGCTGCTC 179865 |||||| || || | ||| | |||||| || | || || | |||||||| ||||||| Sbjct 533 GATGATCCCTACCTTATTGACCGCAACT-TCGGTATTTATTATTGCCTTCATTGCTGCTC 591 Query 179866 CCCCTGTGGACATCGATGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACA 179925 | || || || || ||||| || |||||||| || |||| || || | || || |||| Sbjct 592 CTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTACGGAAACA 651 Query 179926 ACATCATCTCTGGTGCAGTTGTTCCTTCTTCCAACGCAATTGGTCTTCACTTCTATCCCA 179985 | || |||| ||||| || ||||| |||| || || ||| | ||||| || || | Sbjct 652 ATATTCTCTCAGGTGCCATTATTCCTACTTCTGCAGCTATCGGTTTGCACTTTTACCCAA 711 Query 179986 TCTGGGAAGCCGCATCGCTTGACGAGTGGCTGTATAACGGTGGTCCTTTCCAACTTGTCG 180045 |||||||||| ||||| |||| || ||| | || ||||||||||||| |||| | | Sbjct 712 TCTGGGAAGCAGCATCCGTTGATGAATGGTTATACAACGGTGGTCCTTATGAACTAATTG 771 Query 180046 TCTTCCACTTCCTGATTGGCATCTATGCCTACATGGGTCGTGAGTGGGAACTTTCTTATC 180105 | | |||||| | |||| | | | |||||||||||||||||||||||| || | Sbjct 772 TTCTACACTTCTTACTTGGTGTAGCTTCTTACATGGGTCGTGAGTGGGAACTTAGTTTCC 831 Query 180106 GCTTGGGTATGCGCCCCTGGATCTGC-GTAGCATATTCTGCTCCAGTCGCTGCAGCATCT 180164 | |||||||||| || ||||| ||| || |||||||| ||||| || || || || | Sbjct 832 GTCTGGGTATGCGACCTTGGAT-TGCTGTTGCATATTCCGCTCCTGTTGCAGCTGCTACC 890 Query 180165 GCTGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCATTCTCTGACGCAATGCCCCTCGGC 180224 ||||| ||| | |||| || |||||||||| || ||||| | ||||| || || Sbjct 891 GCTGTTTTCTTGATCTACCCAATCGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGA 950 Query 180225 ATTTCTGGCACCTTCAACTACATGCTTGTTTTCCAAGCAGAGCACAACATCCTGATGCAC 180284 |||| ||| || ||||||| |||| |||| ||||| || |||||||||||||| |||||| Sbjct 951 ATTTATGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCAC 1010 Query 180285 CCCTTCCACATGCTGGGAGTAGCAGGTGTCTTCGGCGGTTCACTGTTCTCCGCAATGCAC 180344 || || |||||| | || ||||| ||||| |||||||| || || ||| || ||||| Sbjct 1011 CCATTTCACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCAT 1070 Query 180345 GGTTCACTGGTTACCTCTTCACTGGTTCGTGAAACCACTGAAACTGAGTCCCAGAACTAC 180404 ||||| |||| || ||| || | | |||||||| |||| ||| || || | Sbjct 1071 GGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAA 1130 Query 180405 GGTTACAAGTTTGGTCAAGAAGAAGAGACCTACAACATCGTTGCTGCACATGGATACTTC 180464 ||||| | || |||||||| ||||| || || || ||||| || || ||||| || || Sbjct 1131 GGTTAGAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCCGCTCATGGTTATTTT 1190 Query 180465 GGTCGTCTGATCTTCCAGTATGCATCGTTCAACAACTCCCGTTCACTTCACTTCTTCCTG 180524 || || |||||||||| ||||| ||||||||||| ||||| | ||||||||||| Sbjct 1191 GGCCGATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCGTTACACTTCTTCCTA 1250 Query 180525 GCAGCATGGCCTGTCGTTGGCATCTGGTTCACTGCACTGGGCGTAAGCACCATGGCATTC 180584 || || |||||||| || || |||||||||||||| | || | ||||| ||||||||| Sbjct 1251 GCTGCTTGGCCTGTAGTGGGTATCTGGTTCACTGCTTTAGGTATCAGCACTATGGCATTC 1310 Query 180585 AACCTCAACGGTTTCAACTTCAACCAGTCCATCATTGATGGTCAAGGTCGTGTGCTCAAC 180644 ||||| || || ||||| |||||||| || | ||||| ||||||| ||||| | || Sbjct 1311 AACCTAAATGGCTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGCCGTGTAATTAAT 1370 Query 180645 ACTTGGGCAGACGTACTCAACCGCGCTGGTCTGGGTATGG 180684 |||||||| || | ||||||| ||| || ||||||| Sbjct 1371 ACTTGGGCTGATATCATCAACCGTGCTAACCTTGGTATGG 1410 >seq21 Length=7990 Score = 527 bits (584), Expect = 8e-145 Identities = 727/1014 (72%), Gaps = 2/1014 (0%) Strand=Plus/Plus Query 181424 TTTGACATCCTTGATGACTGGCTTAAACGCGACCGCTTTGTCTTTGTGGGCTGGTCTGGA 181483 ||||| || | ||||||||| | | ||||| || || ||||| || ||||| || Sbjct 1044 TTTGATATTATGGATGACTGGTTACGGAGGGACCGTTTCGTTTTTGTAGGTTGGTCCGGT 1103 Query 181484 CTACTTCTTTTTCCCACTGCTTATCTTGCAATTGGGGGCTGGCTCACTGGCACTACTTTT 181543 ||| | || ||||| ||| ||| | || | ||||| ||| |||| || || || ||| Sbjct 1104 CTATTGCTCTTTCCTTGTGCCTATTTCGCTTTAGGGGGTTGGTTCACAGGTACAACCTTT 1163 Query 181544 GTTACGTCGTGGTACACCCACGGATTGGCGTCTTCCTACCTTGAGGGTGCTAATTTCCTT 181603 || || || ||||| ||||| || ||||| |||||| | || || ||||||| | Sbjct 1164 GTAACTTCATGGTATACCCATGGGTTGGCCAGTTCCTATTTGGAAGGCTGTAATTTCTTA 1223 Query 181604 ACAGCGGCTGTGTCAACGCCTGCTGACGCTATGGGTCATTCTCTTCTTCTACTTTGGGGT 181663 ||||| || || || || |||||| | | | | |||||| | | |||| |||||| Sbjct 1224 ACAGCCGCAGTTTCTACTCCTGCTAATAGTTTAGCGCATTCTTTATTGTTACTATGGGGT 1283 Query 181664 CCTGAAGCTCAGGGCGATTTCGTCCGCTGGGTCCAACTTGGGGGACTCTGGGCTTTTGTG 181723 |||||||| || || ||||| || ||| ||| | || || || ||| ||||||| Sbjct 1284 CCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGCGGTCTGTGGACTTTTGTT 1343 Query 181724 GCGCTCCACGGAGCCTTCGCTCTTATCGGTTTTATGCTCAGGCAATTTGAACTTGCTCG- 181782 || || || || || || | || || ||||| ||| | | |||||||| ||||| || Sbjct 1344 GCTCTGCATGGCGCTTTTGGACTAATAGGTTTCATGTTACGTCAATTTGAGCTTGCCCGA 1403 Query 181783 TCTAATCGGAATCCGACCCTACAATGCGATTGCTTTTTCCGGTCCTATTGCTGTATTCGT 181842 ||| || | | ||||| || ||||| || || || || || || |||||||| || || Sbjct 1404 TCTGTTCA-ATTGCGACCTTATAATGCAATCGCATTCTCTGGCCCAATTGCTGTTTTTGT 1462 Query 181843 CTCTGTATTTCTCATCTATCCTCTGGGACAATCCAGTTGGTTCTTTGCGCCGAGTTTCGG 181902 |||||||| || || ||||| || || || || ||||||||||||| || ||||| || Sbjct 1463 TTCTGTATTCCTGATTTATCCACTAGGGCAGTCTGGTTGGTTCTTTGCACCTAGTTTTGG 1522 Query 181903 TGTCGCGGCGATTTTCCGCTTCCTTCTCTTCCTCCAGGGCTTTCATAATTGGACGCTCAA 181962 ||| || || || || | ||| | ||||| | || || ||||||||||||||||| || Sbjct 1523 TGTAGCAGCTATATTTAGATTCATCCTCTTTTTTCAAGGATTTCATAATTGGACGCTGAA 1582 Query 181963 TCCCTTCCATATGATGGGTGTTGCTGGTATCCTGGGTGGCGCATTACTCTCTGCAATTCA 182022 || || ||||||||||| ||||| ||| | |||| | || || || | || ||||| Sbjct 1583 CCCATTTCATATGATGGGAGTTGCCGGTGTATTGGGCGCTGCTTTGCTATGCGCTATTCA 1642 Query 182023 CGGTGTGACCGTGGAGAATACTCTGTATCAAGACGGTGACCAAGCAAATACTTTCAAAGC 182082 |||| || || || |||||| | | | |||| ||||| |||||||| || || Sbjct 1643 TGGTGCTACTGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTTCGTGC 1702 Query 182083 ATTCGATTCAACTCAAGAAGAAGAAACCTATTCAATGGTTACAGCGAACCGCTTCTGGTC 182142 || | ||||||||| |||||||||||||| ||||| || ||||||||||| ||||| Sbjct 1703 TTTTAACCCAACTCAAGCGGAAGAAACCTATTCCATGGTCACTGCGAACCGCTTTTGGTC 1762 Query 182143 TCAGATCTTCGGTATTGCGTTTAGCAATAAGAGGTGGTTGCATTTCTTTATGCTCTTTGT 182202 || ||||| || |||| ||| |||||| | ||||| |||||||||||| | ||||| Sbjct 1763 CCAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGT 1822 Query 182203 TCCTGTTATGGGTCTTTGGACAAGTTCCATCGGTATTATTGGTCTTGCTCTCAACCTTCG 182262 || || | ||| | |||| ||| | | || | | ||| | || || ||||| || Sbjct 1823 ACCAGTAACCGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGTTTGGCCCTGAACCTACG 1882 Query 182263 TGCTTATGACTTTGTATCCCAAGAAATCAGAGCATCAGAAGACCCAGAGTTCGAGACGTT 182322 ||| || ||||| || || || ||||| | ||| | ||||| || || || ||||| || Sbjct 1883 TGCCTACGACTTCGTTTCTCAGGAAATTCGCGCAGCGGAAGATCCTGAATTTGAGACTTT 1942 Query 182323 CTACACAAAGAACATTCTCTTGAATGAAGGTCTGCGTGCATGGTTAGCACCAGTCGATCA 182382 |||||| || || ||||| || || |||||| | || || ||| | || | ||||| Sbjct 1943 CTACACCAAAAATATTCTATTAAACGAAGGTATTCGCGCTTGGATGGCGGCTCAAGATCA 2002 Query 182383 ACCACATGAGAACTTTGTGTTCCCTGAGGAAGTATTACCCAGAGGTAACGCACT 182436 || ||||| ||| || | ||||||||||| || |||| | || ||||| || Sbjct 2003 GCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCT 2056 >seq10 Length=16924 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 141254 TTCCTCAGTAGCTCAGCGGCAGAGCCGACGACTGTTAATCGTCTGGTCGTAGGTTCAAAT 141313 |||||||||||||||| || ||||| | || ||||||| | |||||||||||||||||| Sbjct 6048 TTCCTCAGTAGCTCAGTGGTAGAGCGGTCGGCTGTTAACTGACTGGTCGTAGGTTCAAAT 6107 Query 141314 CCTACCTGGGGAG 141326 ||||| ||||||| Sbjct 6108 CCTACTTGGGGAG 6120 >seq12 Length=13301 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 141254 TTCCTCAGTAGCTCAGCGGCAGAGCCGACGACTGTTAATCGTCTGGTCGTAGGTTCAAAT 141313 |||||||||||||||| || ||||| | || ||||||| || ||||||||||||| ||| Sbjct 1413 TTCCTCAGTAGCTCAGTGGTAGAGCGGTCGGCTGTTAACCGATTGGTCGTAGGTTCGAAT 1472 Query 141314 CCTACCTGGGGAG 141326 ||||| ||||||| Sbjct 1473 CCTACTTGGGGAG 1485 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 610345213840440