Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Penstemon_20centranthifolius_20[genbank_20GCA_5F000737435.1_202014- 08-04] 6,761 sequences; 4,471,593 total letters Query= NC_015280.1 Length=181044 Score E Sequences producing significant alignments: (Bits) Value seq131 545 3e-150 seq5 471 5e-128 seq21 399 3e-106 >seq131 Length=2205 Score = 545 bits (604), Expect = 3e-150 Identities = 697/955 (73%), Gaps = 10/955 (1%) Strand=Plus/Minus Query 169444 GGTTGGTTTGGTGTTCTAATGATTCCATGCTTACTCACAGCAGCAGCA-TGTTTCATCGT 169502 || |||||||||||| | ||||| || |||| | || ||| | | ||||| || | Sbjct 1288 GGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACCGCAACTTCTGTGTTT-ATTAT 1230 Query 169503 TGCATTCATTGCAGCACCTCCTGTCGATATCGACGGAATCAGAGAACCAGTAGCGGGTTC 169562 ||| |||||||| || ||||| || ||||| || || || | ||||| || | || || Sbjct 1229 TGCCTTCATTGCCGCTCCTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATC 1170 Query 169563 TTTCTTGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCATCAAACGCTATCGG 169622 | | | || || ||||| || ||||| ||||| || |||| | || |||||||| Sbjct 1169 TCTACTTTACGGAAACAATATTATCTCAGGTGCCATTATTCCTACTTCTGCAGCTATCGG 1110 Query 169623 ACTACACTTCTACCCAATCTGGGAAGCAGCAACTGTTGATGAATGGTTGTATAATGGTGG 169682 | ||||| || ||||| |||||||||||| | |||||||||||||| || |||||||| Sbjct 1109 TTTGCACTTTTATCCAATTTGGGAAGCAGCATCCGTTGATGAATGGTTATACAATGGTGG 1050 Query 169683 TCCTTATCAGTTGGTAATCTTCCACTTCCTTATTGGTATCTCAGCATACATGGGAAGACA 169742 ||||||| | | | | | |||||| | ||||| | | |||||||| | | Sbjct 1049 TCCTTATGAACTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGA 990 Query 169743 GTGGGAACTATCATACAGATTAGGAATGCGTCCTTGGATCTGTGTTGCATACTCTGCACC 169802 |||||| || | | | | || ||||| |||||||| ||||||||| || || || Sbjct 989 GTGGGAGCTTAGTTTCCGTCTGGGTATGCGACCTTGGATTGCTGTTGCATATTCAGCTCC 930 Query 169803 AGTATCTGCTGCATTCGCTGTATTCTTAGTATACCCATTTGGTCAGGGTTCATTCTCTGA 169862 || | ||||| |||||| ||||| | |||||| ||||||| || || ||||| Sbjct 929 TGTTGCAGCTGCTACCGCTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGTTTTTCTGA 870 Query 169863 TGGTATGCCACTAGGTATCTCAGGTACTTTCAACTTTATGTTCGTTTTCCAAGCAGAGCA 169922 ||||||||| ||||| || || |||||||||||||| ||| | || ||||| || ||||| Sbjct 869 TGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCA 810 Query 169923 TAACATTCTAATGCATCCTTTCCACATGGCAGGAGTAGCAGGAATGTTCGGAGGATCTTT 169982 ||||| || |||||||| || |||||| ||| ||||| || | ||||| || || | Sbjct 809 CAACATCCTTATGCATCCATTTCACATGTTAGGCGTAGCTGGTGTATTCGGCGGTTCCCT 750 Query 169983 ATTCTCAGCAATGCATGGTTCACTTGTTACTTCATCTCTAATCAGAGAAACAACAGAGCA 170042 |||| || ||||||||||| | || ||||| | | ||||| ||||| ||||| | Sbjct 749 ATTCAGTGCTATGCATGGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAA 690 Query 170043 AGAGTCACAGAACTATGGTTATAAGTTCGGACAAGAAGAAGAAACATACAACATAGTAGC 170102 || || || | ||||| | ||||| ||||| |||||||| || || || ||||| Sbjct 689 TGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGC 630 Query 170103 AGCACACGGTTACTTTGGTCGTCTTATCTTCCAGTATGCTTCATTCAACAACTCAAGAAG 170162 || || ||||| ||||| || | |||||||| |||||| ||||||||||| | Sbjct 629 CGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAACTCGCGTTC 570 Query 170163 TCTACACTTCTTCCTAGCAGTTTTCCCTGTTGTATGTGTATGGTTAACCTCTATGGGTAT 170222 |||||||||||||||| | || ||||| || || | ||||| || || | ||||| Sbjct 569 GTTACACTTCTTCCTAGCTGCTTGGCCTGTAGTGGGTATCTGGTTCACTGCTTTAGGTAT 510 Query 170223 CTGCACAATGGCATTCAACTTGAATGGTTTCAACTTTAACCAATCAGTTGTTGAT-GCTA 170281 | | || |||||||||||| | ||||||||||| ||||||||||| || |||||| || | Sbjct 509 CAGTACTATGGCATTCAACCTAAATGGTTTCAATTTTAACCAATCTGTAGTTGATAGCCA 450 Query 170282 A---CGGAAAAATCGTCCCAACATGGGGTGATGTTCTAAACAGAGCAAACTTGGGTATGG 170338 | || || | | || |||| |||| || | ||| | || ||| ||||||||| Sbjct 449 AGGCCGTGTAATTAAT----ACTTGGGCTGATATTATCAACCGTGCTAACCTGGGTATGG 394 Query 170339 AAGTTATGCATGAAAGAAATGCACACAACTTCCCACTAGACCTAGCATCTGCTGA 170393 |||||||||||||| | ||||| || |||||||| ||||| ||||| ||| ||| Sbjct 393 AAGTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGATCTAGCTGCTGTTGA 339 >seq5 Length=20976 Score = 471 bits (522), Expect = 5e-128 Identities = 606/836 (72%), Gaps = 0/836 (0%) Strand=Plus/Plus Query 169442 TTGGTTGGTTTGGTGTTCTAATGATTCCATGCTTACTCACAGCAGCAGCATGTTTCATCG 169501 |||| ||||| |||||| | ||||| || |||| | || ||| | | || || Sbjct 514 TTGGATGGTTCGGTGTTTTGATGATCCCTACCTTATTGACCGCAACTTCGGTATTTATTA 573 Query 169502 TTGCATTCATTGCAGCACCTCCTGTCGATATCGACGGAATCAGAGAACCAGTAGCGGGTT 169561 |||| |||||||| || ||||| || ||||| || || || | ||||| || | || | Sbjct 574 TTGCCTTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGAT 633 Query 169562 CTTTCTTGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCATCAAACGCTATCG 169621 || | | || || ||||| || |||| ||||| || |||| | || ||||||| Sbjct 634 CTCTACTTTACGGAAACAATATTCTCTCAGGTGCCATTATTCCTACTTCTGCAGCTATCG 693 Query 169622 GACTACACTTCTACCCAATCTGGGAAGCAGCAACTGTTGATGAATGGTTGTATAATGGTG 169681 | | ||||| ||||||||||||||||||||| | |||||||||||||| || || |||| Sbjct 694 GTTTGCACTTTTACCCAATCTGGGAAGCAGCATCCGTTGATGAATGGTTATACAACGGTG 753 Query 169682 GTCCTTATCAGTTGGTAATCTTCCACTTCCTTATTGGTATCTCAGCATACATGGGAAGAC 169741 |||||||| | | | | | |||||| | ||||| | | | |||||||| | Sbjct 754 GTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGTGTAGCTTCTTACATGGGTCGTG 813 Query 169742 AGTGGGAACTATCATACAGATTAGGAATGCGTCCTTGGATCTGTGTTGCATACTCTGCAC 169801 |||||||||| | | | | || ||||| |||||||| ||||||||| || || | Sbjct 814 AGTGGGAACTTAGTTTCCGTCTGGGTATGCGACCTTGGATTGCTGTTGCATATTCCGCTC 873 Query 169802 CAGTATCTGCTGCATTCGCTGTATTCTTAGTATACCCATTTGGTCAGGGTTCATTCTCTG 169861 | || | ||||| |||||| ||||| | |||||| | ||||| || || |||| Sbjct 874 CTGTTGCAGCTGCTACCGCTGTTTTCTTGATCTACCCAATCGGTCAAGGAAGTTTTTCTG 933 Query 169862 ATGGTATGCCACTAGGTATCTCAGGTACTTTCAACTTTATGTTCGTTTTCCAAGCAGAGC 169921 |||||||||| ||||| || | |||||||||||||| ||| | || ||||| || |||| Sbjct 934 ATGGTATGCCTCTAGGAATTTATGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGC 993 Query 169922 ATAACATTCTAATGCATCCTTTCCACATGGCAGGAGTAGCAGGAATGTTCGGAGGATCTT 169981 | ||||| || ||||| || || |||||| ||| ||||| || | ||||| || || Sbjct 994 ACAACATCCTTATGCACCCATTTCACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCC 1053 Query 169982 TATTCTCAGCAATGCATGGTTCACTTGTTACTTCATCTCTAATCAGAGAAACAACAGAGC 170041 ||||| || ||||||||||| | || ||||| | | ||||| ||||| ||||| Sbjct 1054 TATTCAGTGCTATGCATGGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAA 1113 Query 170042 AAGAGTCACAGAACTATGGTTATAAGTTCGGACAAGAAGAAGAAACATACAACATAGTAG 170101 | || || || | ||||| | ||||| ||||| |||||||| || || || |||| Sbjct 1114 ATGAATCTGCTAATGAAGGTTAGAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAG 1173 Query 170102 CAGCACACGGTTACTTTGGTCGTCTTATCTTCCAGTATGCTTCATTCAACAACTCAAGAA 170161 | || || ||||| ||||| || | |||||||| |||||| ||||||||||| | Sbjct 1174 CCGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTT 1233 Query 170162 GTCTACACTTCTTCCTAGCAGTTTTCCCTGTTGTATGTGTATGGTTAACCTCTATGGGTA 170221 |||||||||||||||| | || ||||| || || | ||||| || || | |||| Sbjct 1234 CGTTACACTTCTTCCTAGCTGCTTGGCCTGTAGTGGGTATCTGGTTCACTGCTTTAGGTA 1293 Query 170222 TCTGCACAATGGCATTCAACTTGAATGGTTTCAACTTTAACCAATCAGTTGTTGAT 170277 || |||| |||||||||||| | ||||| ||||| || |||||||| || |||||| Sbjct 1294 TCAGCACTATGGCATTCAACCTAAATGGCTTCAATTTCAACCAATCTGTAGTTGAT 1349 >seq21 Length=7990 Score = 399 bits (442), Expect = 3e-106 Identities = 710/1038 (68%), Gaps = 21/1038 (2%) Strand=Plus/Plus Query 170529 TTTGATGTTCTTGACGACTGGTTAAAGAGAGATCGTTTTGTATTCATAGGATGGTCTGGT 170588 |||||| || | || ||||||||| ||| || ||||| || || |||| ||||| ||| Sbjct 1044 TTTGATATTATGGATGACTGGTTACGGAGGGACCGTTTCGTTTTTGTAGGTTGGTCCGGT 1103 Query 170589 CTTTTACTTCTGCCTTGTGCATACCTATCAATCGGTGGTTGGTTCTTAGGGACTACCTTC 170648 || || || | |||||||| || | | | || ||||||||| ||| || ||||| Sbjct 1104 CTATTGCTCTTTCCTTGTGCCTATTTCGCTTTAGGGGGTTGGTTCACAGGTACAACCTTT 1163 Query 170649 GTTACATCATGGTATACACATGGTGTTGCTTCCTCATATCTTGAGGGATGTAACTTCCTA 170708 || || ||||||||||| ||||| | || || ||| | || || ||||| ||| || Sbjct 1164 GTAACTTCATGGTATACCCATGGGTTGGCCAGTTCCTATTTGGAAGGCTGTAATTTCTTA 1223 Query 170709 ACAGCAGCAGTTTCCACACCTGGCGACGCAATGGGTCATAGTCTTCTGTTCCTTTGGGGA 170768 ||||| |||||||| || |||| | | | ||| | | |||| || ||||| Sbjct 1224 ACAGCCGCAGTTTCTACTCCTGCTAATAGTTTAGCGCATTCTTTATTGTTACTATGGGGT 1283 Query 170769 CCTGAAGCACAAGGTTCATTTGTTCGTTGGTTACAACTCGGAGGTTTATGGAACTTTGTA 170828 |||||||||||||| ||| |||||||| ||| | || ||| | |||| ||||| Sbjct 1284 CCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGCGGTCTGTGGACTTTTGTT 1343 Query 170829 GCATTACATGGAGTCTTTGGACTCATAGGTTTCATGCTCAGACAATTTGAGATCGCAGGA 170888 || | ||||| | |||||||| |||||||||||| | | ||||||||| | || || Sbjct 1344 GCTCTGCATGGCGCTTTTGGACTAATAGGTTTCATGTTACGTCAATTTGAGCTTGCCCGA 1403 Query 170889 CTTGTAGGCATCAGACCTTACAACGCACTCGCATTCTCTGCTGTTATCGCAGTCTTCACT 170948 ||| | ||||||| || ||| |||||||||||| || || || || | Sbjct 1404 TCTGTTCAATTGCGACCTTATAATGCAATCGCATTCTCTGGCCCAATTGCTGTTTTTGTT 1463 Query 170949 AGCATCTTTCTGATCTATCCACTAGGTCAGCACAGTTGGTTCTTCGCACCATCATTCGGT 171008 | || ||||| ||||||||||| ||| |||||||||| ||||| || ||| Sbjct 1464 TCTGTATTCCTGATTTATCCACTAGGGCAGTCTGGTTGGTTCTTTGCACCTAGTTTTGGT 1523 Query 171009 GTCGCAGCAATTTTTCGTTATATCTTATTCATACAAGGTTTCCACAACATTACATTGAAT 171068 || ||||| || ||| | | ||| | || | ||||| || || || || |||| Sbjct 1524 GTAGCAGCTATATTTAGATTCATCCTCTTTTTTCAAGGATTTCATAATTGGACGCTGAAC 1583 Query 171069 CCATTTCACATGATGGGTGTTGCAGGAATACTAGGTGGAGCATTATTATGTGCCATTCAT 171128 |||||||| |||||||| ||||| || || | || | || || |||| || |||||| Sbjct 1584 CCATTTCATATGATGGGAGTTGCCGGTGTATTGGGCGCTGCTTTGCTATGCGCTATTCAT 1643 Query 171129 GGTGCAACAGTGCAGAACACATTGTATGAAGACACATCAGTTTATACTGATAATAAAATT 171188 ||||| || || | || || || | ||||| || |||| | Sbjct 1644 GGTGCTACTGTAGAAAATACTTTATTTGAAG------------ATGGTGAT-----GGTG 1686 Query 171189 CAAAGCACAACATTCCGTGCCTTTGATCCTACACAGGAAGAAGAAACTTACAGTATGATT 171248 |||| ||||| ||||| ||| | || || || | |||||||| || ||| | Sbjct 1687 CAAA----TACATTTCGTGCTTTTAACCCAACTCAAGCGGAAGAAACCTATTCCATGGTC 1742 Query 171249 ACAGCAAACAGATTCTGGTCACAGATATTTGGTATTGCTTTCTCTAACAAAAGATTTTTA 171308 || || ||| | || ||||| || || ||||| ||||||| || || ||| | | ||| Sbjct 1743 ACTGCGAACCGCTTTTGGTCCCAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTA 1802 Query 171309 CACTTCCTTATGTTGTTCGTTCCTGTCATGGGTATGTGGACATCATCTATAGGTATCGTA 171368 || ||| ||||||| || || || || | ||| | |||| || | || | || Sbjct 1803 CATTTCTTTATGTTATTTGTACCAGTAACCGGTTTATGGATGAGTGCTCTTGGAGTAGTC 1862 Query 171369 GGTCTAGCACTTAACCTCAGAGCATACGATTTTGTATCTCAAGAGATAAGAGCAGCAGAA 171428 ||| | || || ||||| | || ||||| || || ||||| || || | ||||| ||| Sbjct 1863 GGTTTGGCCCTGAACCTACGTGCCTACGACTTCGTTTCTCAGGAAATTCGCGCAGCGGAA 1922 Query 171429 GACCCAGAGTTCGAGACTTTCTACACTAAGAATATACTTCTTAATGAAGGTATGAGAGCA 171488 || || || || |||||||||||||| || ||||| || | || |||||||| | || Sbjct 1923 GATCCTGAATTTGAGACTTTCTACACCAAAAATATTCTATTAAACGAAGGTATTCGCGCT 1982 Query 171489 TGGATGTCATCAGTTGACCAACCACATGAGAACTTCGTATTCCCAGAAGAAGTGTTACCA 171548 |||||| | | || || || ||||| ||| | ||||||| || || || ||||| Sbjct 1983 TGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCA 2042 Query 171549 AGAGGTAACGCACTTTAA 171566 | || ||||| |||||| Sbjct 2043 CGTGGAAACGCTCTTTAA 2060 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 579163849278240