Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Penstemon_20centranthifolius_20[genbank_20GCA_5F000737435.1_202014- 08-04] 6,761 sequences; 4,471,593 total letters Query= NC_015281.1 Length=179563 Score E Sequences producing significant alignments: (Bits) Value seq131 612 2e-170 seq5 556 1e-153 seq21 549 2e-151 >seq131 Length=2205 Score = 612 bits (678), Expect = 2e-170 Identities = 717/966 (74%), Gaps = 2/966 (0%) Strand=Plus/Minus Query 167890 AACCGCCTCTATGTCGGTTGGTTCGGCGTACTGATGATTCCAACTCTGTTGGCAGCAACT 167949 ||||| || || |||| ||||| || || ||||||| || || | ||| | |||||| Sbjct 1303 AACCGTCTTTACATCGGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACCGCAACT 1244 Query 167950 ATCTGT-TTCATCGTCGCCTTCGTCGCTGCTCCCCCTGTGGACATCGACGGCATCCGTGA 168008 ||||| || || | |||||| | || ||||| || || || || || || || ||||| Sbjct 1243 -TCTGTGTTTATTATTGCCTTCATTGCCGCTCCTCCAGTAGATATTGATGGTATTCGTGA 1185 Query 168009 ACCCGTCGCTGGTTCACTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTCCCTTC 168068 ||| || |||| || || | || || ||||| || ||||| ||||| || | ||| | Sbjct 1184 ACCTGTTTCTGGATCTCTACTTTACGGAAACAATATTATCTCAGGTGCCATTATTCCTAC 1125 Query 168069 TTCTAATGCTATTGGACTTCACTTCTATCCCATCTGGGAAGCAGCATCACTCGATGAGTG 168128 |||| ||||| || | ||||| ||||| || |||||||||||||| | ||||| || Sbjct 1124 TTCTGCAGCTATCGGTTTGCACTTTTATCCAATTTGGGAAGCAGCATCCGTTGATGAATG 1065 Query 168129 GTTGTATAACGGTGGTCCTTTCCAACTAGTAGTCTTTCACTTCCTCATCGGTATCTATGC 168188 ||| || || |||||||||| ||||| | || | |||||| | | ||| | | Sbjct 1064 GTTATACAATGGTGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGTGTAGCTTG 1005 Query 168189 ATACATGGGACGTGAATGGGAACTTTCATATCGTTTAGGTATGCGTCCATGGATCTGTGT 168248 |||||||| ||||| ||||| ||| | ||| | |||||||| || ||||| ||| Sbjct 1004 TTACATGGGTCGTGAGTGGGAGCTTAGTTTCCGTCTGGGTATGCGACCTTGGATTGCTGT 945 Query 168249 TGCATACTCTGCACCAGTCGCTGCAGCGAGTGCAGTATTCCTAGTGTATCCTTTCGGTCA 168308 |||||| || || || || || || || | || || ||| | | || || | ||||| Sbjct 944 TGCATATTCAGCTCCTGTTGCAGCTGCTACCGCTGTTTTCTTGATCTACCCAATTGGTCA 885 Query 168309 AGGTAGTTTCTCTGATGCAATGCCACTCGGAATCTCAGGAACATTCAACTACATGTTGGT 168368 ||| ||||| ||||||| ||||| || ||||| || || || ||||||| |||| | || Sbjct 884 AGGAAGTTTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGT 825 Query 168369 CTTCCAAGCTGAGCACAATATTCTCATGCATCCCTTCCATATGCTCGGCGTTGCTGGGGT 168428 ||||| ||||||||||| || || |||||||| || || ||| | ||||| ||||| || Sbjct 824 ATTCCAGGCTGAGCACAACATCCTTATGCATCCATTTCACATGTTAGGCGTAGCTGGTGT 765 Query 168429 ATTTGGTGGCAGTTTGTTTAGTGCTATGCACGGAAGTTTGGTTACTTCTTCTCTCGTTAG 168488 ||| || || | || ||||||||||| || ||||| |||||| | | | || Sbjct 764 ATTCGGCGGTTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACTTCTAGTTTGATCAG 705 Query 168489 AGAGACGACTGAAACCGAATCCCAAAACTACGGTTACAAGTTCGGACAAGAAGAAGAAAC 168548 || || || |||| ||||| || | ||||||| ||||| ||||| |||||||| Sbjct 704 GGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAAC 645 Query 168549 ATACAACATCGTAGCCGCTCATGGTTACTTCGGTCGTTTGATCTTCCAATACGCTTCATT 168608 || || |||||||||||||||||||| || || || |||||||||||||| ||| || Sbjct 644 TTATAATATCGTAGCCGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTT 585 Query 168609 CAACAACTCCCGCTCCTTGCACTTCTTCCTTGCTGCATGGCCTGTTGTCGGCATCTGGTT 168668 ||||||||| || || || ||||||||||| ||||| |||||||| || || |||||||| Sbjct 584 CAACAACTCGCGTTCGTTACACTTCTTCCTAGCTGCTTGGCCTGTAGTGGGTATCTGGTT 525 Query 168669 CACCGCCCTTGGCGTCTCCACGATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTC 168728 ||| || | || || || |||||||||||||| || |||||||| || ||||| || Sbjct 524 CACTGCTTTAGGTATCAGTACTATGGCATTCAACCTAAATGGTTTCAATTTTAACCAATC 465 Query 168729 CATCCTTGATGGTCAGGGTCGTGTGTTGAACACCTGGGCAGATGTTCTGAACCGCGCTGG 168788 | ||||| | || || ||||| | || || ||||| ||| || | ||||| ||| Sbjct 464 TGTAGTTGATAGCCAAGGCCGTGTAATTAATACTTGGGCTGATATTATCAACCGTGCTAA 405 Query 168789 TCTGGGTATGGAAGTTATGCATGAGCGTAACGCACACAACTTCCCACTCGATCTTGCTGC 168848 ||||||||||||||||||||||| ||||| || || |||||||| || ||||| ||||| Sbjct 404 CCTGGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGATCTAGCTGC 345 Query 168849 TGCTGA 168854 || ||| Sbjct 344 TGTTGA 339 >seq5 Length=20976 Score = 556 bits (616), Expect = 1e-153 Identities = 690/939 (73%), Gaps = 4/939 (0%) Strand=Plus/Plus Query 167863 TTCTGCGAGTGGGTAAC-ATCAACTAACAACCGCCTCTATGTCGGTTGGTTCGGCGTACT 167921 ||||| | ||| |||| | || | || ||||| || || | || |||||||| || | Sbjct 474 TTCTGTAACTGGATAACCAGCACCGAA-AACCGTCTTTACATTGGATGGTTCGGTGTTTT 532 Query 167922 GATGATTCCAACTCTGTTGGCAGCAACTATCTGT-TTCATCGTCGCCTTCGTCGCTGCTC 167980 |||||| || || | ||| | |||||| || || || || | |||||| | ||||||| Sbjct 533 GATGATCCCTACCTTATTGACCGCAACT-TCGGTATTTATTATTGCCTTCATTGCTGCTC 591 Query 167981 CCCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACA 168040 | || || || || || || || |||||||| || |||| || || | || || |||| Sbjct 592 CTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTACGGAAACA 651 Query 168041 ACATCATCTCTGGTGCAGTTGTCCCTTCTTCTAATGCTATTGGACTTCACTTCTATCCCA 168100 | || |||| ||||| || | ||| ||||| ||||| || | ||||| || || | Sbjct 652 ATATTCTCTCAGGTGCCATTATTCCTACTTCTGCAGCTATCGGTTTGCACTTTTACCCAA 711 Query 168101 TCTGGGAAGCAGCATCACTCGATGAGTGGTTGTATAACGGTGGTCCTTTCCAACTAGTAG 168160 |||||||||||||||| | ||||| ||||| || ||||||||||||| ||||| | | Sbjct 712 TCTGGGAAGCAGCATCCGTTGATGAATGGTTATACAACGGTGGTCCTTATGAACTAATTG 771 Query 168161 TCTTTCACTTCCTCATCGGTATCTATGCATACATGGGACGTGAATGGGAACTTTCATATC 168220 | | |||||| | | ||| | | | |||||||| ||||| ||||||||| | | Sbjct 772 TTCTACACTTCTTACTTGGTGTAGCTTCTTACATGGGTCGTGAGTGGGAACTTAGTTTCC 831 Query 168221 GTTTAGGTATGCGTCCATGGATCTGTGTTGCATACTCTGCACCAGTCGCTGCAGCGAGTG 168280 || | |||||||| || ||||| ||||||||| || || || || || || || | | Sbjct 832 GTCTGGGTATGCGACCTTGGATTGCTGTTGCATATTCCGCTCCTGTTGCAGCTGCTACCG 891 Query 168281 CAGTATTCCTAGTGTATCCTTTCGGTCAAGGTAGTTTCTCTGATGCAATGCCACTCGGAA 168340 | || ||| | | || || |||||||||| ||||| ||||||| ||||| || |||| Sbjct 892 CTGTTTTCTTGATCTACCCAATCGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAA 951 Query 168341 TCTCAGGAACATTCAACTACATGTTGGTCTTCCAAGCTGAGCACAATATTCTCATGCATC 168400 | | || || ||||||| |||| | || ||||| ||||||||||| || || ||||| | Sbjct 952 TTTATGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACC 1011 Query 168401 CCTTCCATATGCTCGGCGTTGCTGGGGTATTTGGTGGCAGTTTGTTTAGTGCTATGCACG 168460 | || || ||| | ||||| ||||| ||||| || ||| | || ||||||||||| | Sbjct 1012 CATTTCACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATG 1071 Query 168461 GAAGTTTGGTTACTTCTTCTCTCGTTAGAGAGACGACTGAAACCGAATCCCAAAACTACG 168520 | ||||| |||||| | | | || || || || |||| ||||| || | | Sbjct 1072 GTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAG 1131 Query 168521 GTTACAAGTTCGGACAAGAAGAAGAAACATACAACATCGTAGCCGCTCATGGTTACTTCG 168580 |||| | ||||| ||||| |||||||| || || |||||||||||||||||||| || | Sbjct 1132 GTTAGAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCCGCTCATGGTTATTTTG 1191 Query 168581 GTCGTTTGATCTTCCAATACGCTTCATTCAACAACTCCCGCTCCTTGCACTTCTTCCTTG 168640 | || |||||||||||||| ||| ||||||||||| || || || ||||||||||| | Sbjct 1192 GCCGATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCGTTACACTTCTTCCTAG 1251 Query 168641 CTGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGTCTCCACGATGGCATTCA 168700 |||| |||||||| || || ||||||||||| || | || || ||| |||||||||| Sbjct 1252 CTGCTTGGCCTGTAGTGGGTATCTGGTTCACTGCTTTAGGTATCAGCACTATGGCATTCA 1311 Query 168701 ACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAACA 168760 |||| || || ||||| |||||||| || | ||||| |||| || ||||| | || | Sbjct 1312 ACCTAAATGGCTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGCCGTGTAATTAATA 1371 Query 168761 CCTGGGCAGATGTTCTGAACCGCGCTGGTCTGGGTATGG 168799 | ||||| ||| | | ||||| ||| || ||||||| Sbjct 1372 CTTGGGCTGATATCATCAACCGTGCTAACCTTGGTATGG 1410 >seq21 Length=7990 Score = 549 bits (608), Expect = 2e-151 Identities = 732/1016 (72%), Gaps = 6/1016 (1%) Strand=Plus/Plus Query 169307 TTCGATGTTCTCGATGACTGGCTCAAACGCGACCGCTTTGTATTCATTGGTTGGTCTGGT 169366 || ||| || | ||||||||| | | ||||| || || || | |||||||| ||| Sbjct 1044 TTTGATATTATGGATGACTGGTTACGGAGGGACCGTTTCGTTTTTGTAGGTTGGTCCGGT 1103 Query 169367 CTACTTCTTCTTCCCACTGCCTATCTTGCTATTGGAGGGTGGCTCACTGGTACAGCGTTT 169426 ||| | || |||| ||||||| | ||| | || || ||| |||| |||||| | ||| Sbjct 1104 CTATTGCTCTTTCCTTGTGCCTATTTCGCTTTAGGGGGTTGGTTCACAGGTACAACCTTT 1163 Query 169427 GTTACTTCCTGGTACACCCACGGACTCGCTTCCAGTTACT---TAGAAGGCGCTAACTTC 169483 || ||||| ||||| ||||| || | || ||||| || | |||||| ||| ||| Sbjct 1164 GTAACTTCATGGTATACCCATGGGTTGGC---CAGTTCCTATTTGGAAGGCTGTAATTTC 1220 Query 169484 CTCACTGCTGCTGTCAGTACACCTGCTGACGCTATGGGACACTCACTGCTCTTGCTATGG 169543 | || || || || ||| |||||| | | | | || || | | || |||||| Sbjct 1221 TTAACAGCCGCAGTTTCTACTCCTGCTAATAGTTTAGCGCATTCTTTATTGTTACTATGG 1280 Query 169544 GGTCCAGAAGCACAAGGCGATTTCGTTCGCTGGTGTCAATTGGGTGGTCTCTGGAACTTT 169603 ||||| ||||||||||| ||||| ||| ||||||||||| || ||||| |||| ||| Sbjct 1281 GGTCCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGCGGTCTGTGGACTTTT 1340 Query 169604 GTAGCACTTCATGGTGCATTTGCATTGATTGGTTTCATGCTTAGGCAGTTTGAATTGGCA 169663 || || || ||||| || |||| | | || ||||||||| | | || ||||| | || Sbjct 1341 GTTGCTCTGCATGGCGCTTTTGGACTAATAGGTTTCATGTTACGTCAATTTGAGCTTGCC 1400 Query 169664 CGTCTTATTGGCATCCGTCCTTATAATGCTATTGCATTCTCTGGTCCTATTGCTGTATTT 169723 || | || | || ||||||||||| || ||||||||||| || |||||||| ||| Sbjct 1401 CGATCTGTTCAATTGCGACCTTATAATGCAATCGCATTCTCTGGCCCAATTGCTGTTTTT 1460 Query 169724 GTCAGTGTCTTTCTTATCTACCCACTTGGACAGTCCTCATGGTTCTTTGCTCCCTCCTTT 169783 || ||| || || || || ||||| || ||||| ||||||||||| || ||| Sbjct 1461 GTTTCTGTATTCCTGATTTATCCACTAGGGCAGTCTGGTTGGTTCTTTGCACCTAGTTTT 1520 Query 169784 GGAGTATCAGCAATCTTCAGGTTCCTGTTGTTCCTGCAAGGATTCCACAACTGGACGTTG 169843 || ||| |||| || || || ||| | | || | |||||||| || || |||||| || Sbjct 1521 GGTGTAGCAGCTATATTTAGATTCATCCTCTTTTTTCAAGGATTTCATAATTGGACGCTG 1580 Query 169844 AATCCATTCCACATGATGGGTGTAGCAGGAATCTTGGGCGGAGCATTGCTTTCTGCTATC 169903 || ||||| || |||||||| || || || | ||||||| || ||||| | ||||| Sbjct 1581 AACCCATTTCATATGATGGGAGTTGCCGGTGTATTGGGCGCTGCTTTGCTATGCGCTATT 1640 Query 169904 CATGGTGTTACAGTAGAGAACACATTGTATGAAGACGGTGAGCAGGCAAATACTTTCAAG 169963 ||||||| ||| ||||| || || || | |||||| ||||| |||||||| || Sbjct 1641 CATGGTGCTACTGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTTCGT 1700 Query 169964 GCGTTTGATTCGACACAGGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGG 170023 || ||| | | || || | ||||| || ||||| ||||||||||| |||||||| ||| Sbjct 1701 GCTTTTAACCCAACTCAAGCGGAAGAAACCTATTCCATGGTCACTGCGAACCGCTTTTGG 1760 Query 170024 TCGCAGATCTTCGGTATTGCGTTTTCTAACAAGCGTTGGCTTCATTTTTTCATGTTGTTT 170083 || || ||||| || |||| ||||| || || |||||| | ||||| || ||||| ||| Sbjct 1761 TCCCAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTT 1820 Query 170084 GTGCCTGTTATGGGTCTTTGGACATCCTCTATTGGCATTATTGGCCTTGCTCTCAATCTT 170143 || || || | ||| | |||| || |||| | | || | || || || || Sbjct 1821 GTACCAGTAACCGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGTTTGGCCCTGAACCTA 1880 Query 170144 CGTGCTTACGATTTCGTGAGTCAGGAGATCAGAGCAGCAGAAGATCCAGAATTTGAGACC 170203 ||||| ||||| ||||| |||||| || | ||||| |||||||| ||||||||||| Sbjct 1881 CGTGCCTACGACTTCGTTTCTCAGGAAATTCGCGCAGCGGAAGATCCTGAATTTGAGACT 1940 Query 170204 TTCTACACCAAAAACATCCTATTGAATGAAGGACTTCGTGCATGGTTGGCACCTGCTGAT 170263 |||||||||||||| || ||||| || ||||| |||| || ||| |||| || ||| Sbjct 1941 TTCTACACCAAAAATATTCTATTAAACGAAGGTATTCGCGCTTGGATGGCGGCTCAAGAT 2000 Query 170264 CAACCACATGAAAACTTCATCTTCCCAGAAGAAGTTCTTCCGAGAGGTAACGCACT 170319 || || ||||||||| | || ||||| || || ||||| || | || ||||| || Sbjct 2001 CAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCT 2056 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 574425049799880