Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Penstemon_20centranthifolius_20[genbank_20GCA_5F000737435.1_202014- 08-04] 6,761 sequences; 4,471,593 total letters Query= NC_015282.1 Length=174079 Score E Sequences producing significant alignments: (Bits) Value seq131 684 0.0 seq5 630 8e-176 seq21 563 1e-155 >seq131 Length=2205 Score = 684 bits (758), Expect = 0.0 Identities = 735/967 (76%), Gaps = 4/967 (0%) Strand=Plus/Minus Query 163812 AACCGCCTCTATGTTGGTTGGTTCGGCGTTCTGATGATCCCTACGCTGCTTG-CAGCAAC 163870 ||||| || || | || ||||| || ||| ||||||||||||| || ||| | ||||| Sbjct 1303 AACCGTCTTTACATCGGATGGTTTGGTGTTTTGATGATCCCTAC-CTTATTGACCGCAAC 1245 Query 163871 CATCTGT-TTCATCGTCGCCTTCGTCGCTGCTCCCCCTGTGGACATCGATGGTATTCGTG 163929 ||||| || || | |||||| | || ||||| || || || || ||||||||||||| Sbjct 1244 T-TCTGTGTTTATTATTGCCTTCATTGCCGCTCCTCCAGTAGATATTGATGGTATTCGTG 1186 Query 163930 AACCTGTTGCAGGTTCGCTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCCT 163989 |||||||| | || || || | || || ||||| || ||||| ||||| || |||| Sbjct 1185 AACCTGTTTCTGGATCTCTACTTTACGGAAACAATATTATCTCAGGTGCCATTATTCCTA 1126 Query 163990 CGTCCAATGCAATTGGTCTTCACTTCTACCCCATTTGGGAAGCCGCATCCCTTGATGAAT 164049 | || || || ||| | ||||| || || ||||||||||| |||||| ||||||||| Sbjct 1125 CTTCTGCAGCTATCGGTTTGCACTTTTATCCAATTTGGGAAGCAGCATCCGTTGATGAAT 1066 Query 164050 GGCTTTACAACGGTGGTCCTTTCCAACTTGTCGTCTTCCACTTCCTGATCGGTATCTATG 164109 || | ||||| |||||||||| |||| | || | |||||| | | ||| | | Sbjct 1065 GGTTATACAATGGTGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGTGTAGCTT 1006 Query 164110 CATACATGGGTCGTGAGTGGGAACTGTCTTACCGTCTTGGTATGCGTCCTTGGATTTGTG 164169 |||||||||||||||||||| || || |||||| |||||||| ||||||||| || Sbjct 1005 GTTACATGGGTCGTGAGTGGGAGCTTAGTTTCCGTCTGGGTATGCGACCTTGGATTGCTG 946 Query 164170 TTGCTTACTCTGCACCCGTTGCAGCAGCATCCGCAGTCTTCCTGGTCTATCCTTTCGGTC 164229 |||| || || || || |||||||| || |||| || ||| || |||| || | |||| Sbjct 945 TTGCATATTCAGCTCCTGTTGCAGCTGCTACCGCTGTTTTCTTGATCTACCCAATTGGTC 886 Query 164230 AAGGTTCGTTCTCTGACGCAATGCCCCTGGGCATCTCTGGCACCTTCAACTACATGTTGG 164289 |||| || ||||| | ||||| || || || ||||| || ||||||| |||| | | Sbjct 885 AAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTG 826 Query 164290 TGTTCCAAGCAGAGCACAACATCCTGATGCACCCCTTCCATATGCTCGGCGTTGCTGGCG 164349 | ||||| || |||||||||||||| ||||| || || || ||| | ||||| ||||| | Sbjct 825 TATTCCAGGCTGAGCACAACATCCTTATGCATCCATTTCACATGTTAGGCGTAGCTGGTG 766 Query 164350 TATTTGGCGGTTCTCTGTTCAGTGCAATGCACGGTTCTCTGGTTACTTCTTCGCTGGTTC 164409 |||| |||||||| || |||||||| ||||| ||||| |||| |||||| || | Sbjct 765 TATTCGGCGGTTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACTTCTAGTTTGATCA 706 Query 164410 GTGAAACCACCGAAACTGAGTCCCAGAACTATGGTTACAAGTTTGGTCAAGAAGAAGAAA 164469 | |||||||| |||| ||| || || | ||||||| || |||||||| ||||||| Sbjct 705 GGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAA 646 Query 164470 CATACAACATTGTTGCCGCTCACGGTTACTTTGGTCGTCTGATCTTCCAATACGCTTCAT 164529 | || || || || |||||||| ||||| ||||| || ||||||||||||| ||| | Sbjct 645 CTTATAATATCGTAGCCGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTT 586 Query 164530 TCAACAACTCCCGTTCCTTGCACTTCTTCCTTGCTGCATGGCCTGTTGTTGGCATCTGGT 164589 |||||||||| ||||| || ||||||||||| ||||| |||||||| || || ||||||| Sbjct 585 TCAACAACTCGCGTTCGTTACACTTCTTCCTAGCTGCTTGGCCTGTAGTGGGTATCTGGT 526 Query 164590 TCACCGCACTTGGTGTTTCCACGATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGT 164649 |||| || | ||| | || |||||||||||||| || |||||||| || ||||| | Sbjct 525 TCACTGCTTTAGGTATCAGTACTATGGCATTCAACCTAAATGGTTTCAATTTTAACCAAT 466 Query 164650 CCATCATCGATGGTCAGGGTCGTGTGCTCAACACTTGGGCAGACGTTCTCAACCGCGCTG 164709 | | | ||| | || || ||||| | || |||||||| || || ||||||| ||| Sbjct 465 CTGTAGTTGATAGCCAAGGCCGTGTAATTAATACTTGGGCTGATATTATCAACCGTGCTA 406 Query 164710 GTCTGGGTATGGAAGTTATGCACGAGCGTAACGCTCACAACTTCCCTCTGGATCTCGCTG 164769 |||||||||||||||||||| || ||||| ||||| ||||||||||| ||||| |||| Sbjct 405 ACCTGGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGATCTAGCTG 346 Query 164770 CTGCTGA 164776 ||| ||| Sbjct 345 CTGTTGA 339 >seq5 Length=20976 Score = 630 bits (698), Expect = 8e-176 Identities = 690/912 (76%), Gaps = 4/912 (0%) Strand=Plus/Plus Query 163812 AACCGCCTCTATGTTGGTTGGTTCGGCGTTCTGATGATCCCTACGCTGCTTG-CAGCAAC 163870 ||||| || || |||| |||||||| ||| ||||||||||||| || ||| | ||||| Sbjct 501 AACCGTCTTTACATTGGATGGTTCGGTGTTTTGATGATCCCTAC-CTTATTGACCGCAAC 559 Query 163871 CATCTGT-TTCATCGTCGCCTTCGTCGCTGCTCCCCCTGTGGACATCGATGGTATTCGTG 163929 || || || || | |||||| | |||||||| || || || || ||||||||||||| Sbjct 560 T-TCGGTATTTATTATTGCCTTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTG 618 Query 163930 AACCTGTTGCAGGTTCGCTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCCT 163989 |||||||| | || || || | || || ||||| || |||| ||||| || |||| Sbjct 619 AACCTGTTTCTGGATCTCTACTTTACGGAAACAATATTCTCTCAGGTGCCATTATTCCTA 678 Query 163990 CGTCCAATGCAATTGGTCTTCACTTCTACCCCATTTGGGAAGCCGCATCCCTTGATGAAT 164049 | || || || ||| | ||||| ||||| || |||||||| |||||| ||||||||| Sbjct 679 CTTCTGCAGCTATCGGTTTGCACTTTTACCCAATCTGGGAAGCAGCATCCGTTGATGAAT 738 Query 164050 GGCTTTACAACGGTGGTCCTTTCCAACTTGTCGTCTTCCACTTCCTGATCGGTATCTATG 164109 || | |||||||||||||||| |||| | || | |||||| | | ||| | | Sbjct 739 GGTTATACAACGGTGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGTGTAGCTT 798 Query 164110 CATACATGGGTCGTGAGTGGGAACTGTCTTACCGTCTTGGTATGCGTCCTTGGATTTGTG 164169 | ||||||||||||||||||||||| || |||||| |||||||| ||||||||| || Sbjct 799 CTTACATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGACCTTGGATTGCTG 858 Query 164170 TTGCTTACTCTGCACCCGTTGCAGCAGCATCCGCAGTCTTCCTGGTCTATCCTTTCGGTC 164229 |||| || || || || |||||||| || |||| || ||| || |||| || |||||| Sbjct 859 TTGCATATTCCGCTCCTGTTGCAGCTGCTACCGCTGTTTTCTTGATCTACCCAATCGGTC 918 Query 164230 AAGGTTCGTTCTCTGACGCAATGCCCCTGGGCATCTCTGGCACCTTCAACTACATGTTGG 164289 |||| || ||||| | ||||| || || || | ||| || ||||||| |||| | | Sbjct 919 AAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATTTATGGTACTTTCAACTTCATGATTG 978 Query 164290 TGTTCCAAGCAGAGCACAACATCCTGATGCACCCCTTCCATATGCTCGGCGTTGCTGGCG 164349 | ||||| || |||||||||||||| |||||||| || || ||| | ||||| ||||| | Sbjct 979 TATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAGGCGTAGCTGGTG 1038 Query 164350 TATTTGGCGGTTCTCTGTTCAGTGCAATGCACGGTTCTCTGGTTACTTCTTCGCTGGTTC 164409 |||| ||||| || || |||||||| ||||| ||||| |||| |||||| || | Sbjct 1039 TATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACTTCTAGTTTGATCA 1098 Query 164410 GTGAAACCACCGAAACTGAGTCCCAGAACTATGGTTACAAGTTTGGTCAAGAAGAAGAAA 164469 | |||||||| |||| ||| || || | ||||| | || |||||||| ||||||| Sbjct 1099 GGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTAGAGATTCGGTCAAGAGGAAGAAA 1158 Query 164470 CATACAACATTGTTGCCGCTCACGGTTACTTTGGTCGTCTGATCTTCCAATACGCTTCAT 164529 | || || || || |||||||| ||||| ||||| || ||||||||||||| ||| | Sbjct 1159 CTTATAATATCGTAGCCGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTT 1218 Query 164530 TCAACAACTCCCGTTCCTTGCACTTCTTCCTTGCTGCATGGCCTGTTGTTGGCATCTGGT 164589 |||||||||| ||||| || ||||||||||| ||||| |||||||| || || ||||||| Sbjct 1219 TCAACAACTCTCGTTCGTTACACTTCTTCCTAGCTGCTTGGCCTGTAGTGGGTATCTGGT 1278 Query 164590 TCACCGCACTTGGTGTTTCCACGATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGT 164649 |||| || | ||| | ||| |||||||||||||| || || ||||| |||||||| | Sbjct 1279 TCACTGCTTTAGGTATCAGCACTATGGCATTCAACCTAAATGGCTTCAATTTCAACCAAT 1338 Query 164650 CCATCATCGATGGTCAGGGTCGTGTGCTCAACACTTGGGCAGACGTTCTCAACCGCGCTG 164709 | | | ||| |||| || ||||| | || |||||||| || | ||||||| ||| Sbjct 1339 CTGTAGTTGATAGTCAAGGCCGTGTAATTAATACTTGGGCTGATATCATCAACCGTGCTA 1398 Query 164710 GTCTGGGTATGG 164721 || ||||||| Sbjct 1399 ACCTTGGTATGG 1410 >seq21 Length=7990 Score = 563 bits (624), Expect = 1e-155 Identities = 731/1004 (73%), Gaps = 6/1004 (1%) Strand=Plus/Plus Query 165206 GATGACTGGCTTAAACGAGATCGTTTCGTTTTTGTTGGTTGGTCTGGACTTCTTCTTTTT 165265 ||||||||| | | || |||||||||||||| |||||||| || || | || ||| Sbjct 1056 GATGACTGGTTACGGAGGGACCGTTTCGTTTTTGTAGGTTGGTCCGGTCTATTGCTCTTT 1115 Query 165266 CCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGGACTACTTTCGCGACGAGTTGG 165325 || ||| ||| | ||| | || |||||| | || || || || || | || ||| Sbjct 1116 CCTTGTGCCTATTTCGCTTTAGGGGGTTGGTTCACAGGTACAACCTTTGTAACTTCATGG 1175 Query 165326 TATACTCACGGGTTGGCAAGTTCCTATCTGGAGGG-TGCAAACTTTCTTA-CTGCGGCAG 165383 ||||| || |||||||| ||||||||| |||| || || || ||||||| | || |||| Sbjct 1176 TATACCCATGGGTTGGCCAGTTCCTATTTGGAAGGCTGTAA--TTTCTTAACAGCCGCAG 1233 Query 165384 TTTCTACTCCAGCAGACGCTATGGGTCATTCTCTTCTGCTTCTCTGGGGTCCTGAGGCTC 165443 |||||||||| || | | | | |||||| | || | || ||||||||||| || | Sbjct 1234 TTTCTACTCCTGCTAATAGTTTAGCGCATTCTTTATTGTTACTATGGGGTCCTGAAGCAC 1293 Query 165444 AAGGGGATTTCGTCAGGTGGATCCAACTTGGGGGACTCTGGGCTTTTGTGGCGCTCCACG 165503 |||| ||||| | ||| ||| | || || || ||| ||||||| || || || | Sbjct 1294 AAGGAGATTTTACTCGTTGGTGTCAATTAGGCGGTCTGTGGACTTTTGTTGCTCTGCATG 1353 Query 165504 GGGCTTTCGCTCTAATTGGTTTCATGCTTCGTCAGTTTGAATTAGCACG-TCTCATCGGT 165562 | ||||| | ||||| ||||||||| | ||||| ||||| | || || ||| || | Sbjct 1354 GCGCTTTTGGACTAATAGGTTTCATGTTACGTCAATTTGAGCTTGCCCGATCTGTTCAAT 1413 Query 165563 ATCCGTCCCTACAATGCTATTGCGTTCTCTGGTCCTATCGCTGTTTTTGTTAGCGTCTTT 165622 | || || || ||||| || || |||||||| || || |||||||||||| || || Sbjct 1414 -TGCGACCTTATAATGCAATCGCATTCTCTGGCCCAATTGCTGTTTTTGTTTCTGTATTC 1472 Query 165623 CTCATCTACCCTCTGGGTCAATCGAGTTGGTTTTTCGCTCCATCTTTCGGGGTCGCAGCA 165682 || || || || || || || || ||||||| || || || ||| || || ||||| Sbjct 1473 CTGATTTATCCACTAGGGCAGTCTGGTTGGTTCTTTGCACCTAGTTTTGGTGTAGCAGCT 1532 Query 165683 ATCTTCAGGTTCCTTCTCTTCCTACAAGGATTCCATAACTGGACCTTGAATCCCTTTCAT 165742 || || || ||| | ||||| | |||||||| ||||| ||||| |||| || |||||| Sbjct 1533 ATATTTAGATTCATCCTCTTTTTTCAAGGATTTCATAATTGGACGCTGAACCCATTTCAT 1592 Query 165743 ATGATGGGTGTTGCAGGTATCCTGGGTGGTGCATTGCTTTCTGCCATCCATGGTGTTACA 165802 |||||||| ||||| ||| | |||| | ||| ||||| | || || ||||||| ||| Sbjct 1593 ATGATGGGAGTTGCCGGTGTATTGGGCGCTGCTTTGCTATGCGCTATTCATGGTGCTACT 1652 Query 165803 GTAGAGAATACTCTGTATCAAGATGGTGACGATGCAAATACTTTCAAGGCATTTGACTCT 165862 ||||| |||||| | | | |||||||||| | ||||||||| || || ||| || | Sbjct 1653 GTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTTCGTGCTTTTAACCCA 1712 Query 165863 ACTCAAGAGGAAGAAACCTACTCAATGGTTACTGCAAACCGTTTCTGGTCTCAGATCTTC 165922 ||||||| |||||||||||| || ||||| ||||| ||||| || ||||| || ||||| Sbjct 1713 ACTCAAGCGGAAGAAACCTATTCCATGGTCACTGCGAACCGCTTTTGGTCCCAAATCTTT 1772 Query 165923 GGTATTGCGTTTAGTAATAAGAGGTGGTTGCATTTCTTTATGCTGTTTGTTCCTGTTATG 165982 || |||| ||| ||||| | ||||| |||||||||||| | ||||| || || | Sbjct 1773 GGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACC 1832 Query 165983 GGTCTTTGGACAAGTTCCATCGGTATTATTGGTCTTGCTCTCAACCTTCGTGCTTATGAC 166042 ||| | |||| ||| | | || | | ||| | || || ||||| ||||| || ||| Sbjct 1833 GGTTTATGGATGAGTGCTCTTGGAGTAGTCGGTTTGGCCCTGAACCTACGTGCCTACGAC 1892 Query 166043 TTTGTATCCCAAGAGATCAGAGCAGCAGAAGACCCAGAGTTTGAAACCTTCTACACGAAA 166102 || || || || || || | ||||| ||||| || || ||||| || |||||||| ||| Sbjct 1893 TTCGTTTCTCAGGAAATTCGCGCAGCGGAAGATCCTGAATTTGAGACTTTCTACACCAAA 1952 Query 166103 AACATTCTCTTGAATGAAGGTCTTCGTGCTTGGTTGGCACCAGTCGATCAACCGCATGAG 166162 || ||||| || || |||||| |||| |||||| |||| | ||||| || ||||| Sbjct 1953 AATATTCTATTAAACGAAGGTATTCGCGCTTGGATGGCGGCTCAAGATCAGCCTCATGAA 2012 Query 166163 AACTTTGTCTTCCCTGAAGAAGTTCTGCCTAGGGGTAACGCGCT 166206 ||| || | |||||||| || ||||| || | || ||||| || Sbjct 2013 AACCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCT 2056 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556877732892840