Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Penstemon_20centranthifolius_20[genbank_20GCA_5F000737435.1_202014- 08-04] 6,761 sequences; 4,471,593 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq131 495 4e-135 seq5 441 8e-119 seq21 399 3e-106 >seq131 Length=2205 Score = 495 bits (548), Expect = 4e-135 Identities = 686/959 (72%), Gaps = 10/959 (1%) Strand=Plus/Minus Query 171854 TTTATGTTGGTTGGTTCGGTGTACTCATGATCCCATGTTTGCTCACAGCAGCAGCATGCT 171913 |||| | || ||||| ||||| | |||||||| || | || ||| | | | Sbjct 1296 TTTACATCGGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACCGCAACTTCTGTGT 1237 Query 171914 TCATCGTTGCATTCATTGCAGCACCTCCTGTCGATATCGACGGAATCAGAGAACCAGTTG 171973 | || |||| |||||||| || ||||| || ||||| || || || | ||||| ||| Sbjct 1236 TTATTATTGCCTTCATTGCCGCTCCTCCAGTAGATATTGATGGTATTCGTGAACCTGTTT 1177 Query 171974 CGGGTTCTTTCTTATATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCATCAAACG 172033 | || ||| | | || || ||||| || ||||| ||||| || |||| | || | Sbjct 1176 CTGGATCTCTACTTTACGGAAACAATATTATCTCAGGTGCCATTATTCCTACTTCTGCAG 1117 Query 172034 CAATAGGTCTCCACTTCTACCCTATCTGGGAAGCAGCAACCGTAGATGAATGGTTGTACA 172093 | || ||| | ||||| || || || |||||||||||| |||| ||||||||||| |||| Sbjct 1116 CTATCGGTTTGCACTTTTATCCAATTTGGGAAGCAGCATCCGTTGATGAATGGTTATACA 1057 Query 172094 ATGGTGGTCCTTATCAGTTGGTAATCTTCCACTTCCTTATCGGTATCTCAGCATACATGG 172153 |||||||||||||| | | | | | |||||| | | ||| | | ||||||| Sbjct 1056 ATGGTGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATGG 997 Query 172154 GAAGACAGTGGGAACTATCATACAGATTAGGTATGAGACCATGGATATGTGTAGCATATT 172213 | | ||||||| || | | | | |||||| |||| ||||| ||| ||||||| Sbjct 996 GTCGTGAGTGGGAGCTTAGTTTCCGTCTGGGTATGCGACCTTGGATTGCTGTTGCATATT 937 Query 172214 CAGCACCTGTATCAGCAGCATTTGCTGTGTTCCTTGTGTATCCATTCGGTCAGGGTTCAT 172273 |||| ||||| |||| || ||||| ||| | | || ||| | ||||| || | Sbjct 936 CAGCTCCTGTTGCAGCTGCTACCGCTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGTT 877 Query 172274 TCTCTGATGGTATGCCACTAGGTATCTCAGGTACGTTCAACTTTATGTTCGTGTTCCAAG 172333 | |||||||||||||| ||||| || || ||||| |||||||| ||| | || ||||| | Sbjct 876 TTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAGG 817 Query 172334 CAGAGCATAACATTCTAATGCATCCTTTCCACATGGCAGGAGTAGCAGGAATGTTTGGAG 172393 | ||||| ||||| || |||||||| || |||||| ||| ||||| || | || || | Sbjct 816 CTGAGCACAACATCCTTATGCATCCATTTCACATGTTAGGCGTAGCTGGTGTATTCGGCG 757 Query 172394 GATCTTTATTCTCAGCAATGCACGGTTCTTTAGTTACATCTTCTCTAATCAGAGAGACAA 172453 | || ||||| || ||||| ||||| || || || ||| | | ||||| || || | Sbjct 756 GTTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCA 697 Query 172454 CTGAAGCAGAATCACAGAACTACGGATACAAGTTCGGACAAGAAGAAGAAACATACAACA 172513 | ||| ||||| || | || |||| ||||| ||||| |||||||| || || | Sbjct 696 CAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACTTATAATA 637 Query 172514 TAGTAGCAGCACACGGTTACTTTGGTCGTCTTATCTTCCAGTATGCTTCTTTCAACAACT 172573 | ||||| || || ||||| ||||| || | |||||||| |||||| ||||||||||| Sbjct 636 TCGTAGCCGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAACT 577 Query 172574 CAAGAAGTCTTCACTTCTTCCTAGCAGTTTTCCCTGTTGTATGTGTATGGTTAACCTCTA 172633 | | | |||||||||||||| | || ||||| || || | ||||| || || Sbjct 576 CGCGTTCGTTACACTTCTTCCTAGCTGCTTGGCCTGTAGTGGGTATCTGGTTCACTGCTT 517 Query 172634 TGGGTATCTGTACAATGGCATTCAACCTTAACGGTTTCAACTTCAACCAATCAGTTGTAG 172693 | |||||| |||| |||||||||||||| || |||||||| || |||||||| || || | Sbjct 516 TAGGTATCAGTACTATGGCATTCAACCTAAATGGTTTCAATTTTAACCAATCTGTAGTTG 457 Query 172694 AT-GCTAACG----GTAAGATTGTTCCTACATGGGGTGACGTTCTTAACAGAGCAAACCT 172748 || || || | |||| || ||| |||| ||| || | ||| | || ||||| Sbjct 456 ATAGCCAAGGCCGTGTAA-----TTAATACTTGGGCTGATATTATCAACCGTGCTAACCT 402 Query 172749 AGGTATGGAAGTTATGCATGAAAGAAATGCACACAACTTCCCATTAGACCTTGCTTCTG 172807 ||||||||||||||||||||| | ||||| || |||||||| |||| || ||| ||| Sbjct 401 GGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGATCTAGCTGCTG 343 >seq5 Length=20976 Score = 441 bits (488), Expect = 8e-119 Identities = 660/937 (70%), Gaps = 0/937 (0%) Strand=Plus/Plus Query 171820 TTCTGCGAATGGGTAACCTCAACTAACAACAGAATTTATGTTGGTTGGTTCGGTGTACTC 171879 ||||| | ||| ||||| || | ||| | |||| |||| ||||||||||| | Sbjct 474 TTCTGTAACTGGATAACCAGCACCGAAAACCGTCTTTACATTGGATGGTTCGGTGTTTTG 533 Query 171880 ATGATCCCATGTTTGCTCACAGCAGCAGCATGCTTCATCGTTGCATTCATTGCAGCACCT 171939 |||||||| || | || ||| | | || || |||| |||||||| || ||| Sbjct 534 ATGATCCCTACCTTATTGACCGCAACTTCGGTATTTATTATTGCCTTCATTGCTGCTCCT 593 Query 171940 CCTGTCGATATCGACGGAATCAGAGAACCAGTTGCGGGTTCTTTCTTATATGGTAACAAC 171999 || || ||||| || || || | ||||| ||| | || ||| | | || || ||||| Sbjct 594 CCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTACGGAAACAAT 653 Query 172000 ATCATCTCTGGTGCAGTTGTTCCATCATCAAACGCAATAGGTCTCCACTTCTACCCTATC 172059 || |||| ||||| || |||| | || || || ||| | ||||| ||||| ||| Sbjct 654 ATTCTCTCAGGTGCCATTATTCCTACTTCTGCAGCTATCGGTTTGCACTTTTACCCAATC 713 Query 172060 TGGGAAGCAGCAACCGTAGATGAATGGTTGTACAATGGTGGTCCTTATCAGTTGGTAATC 172119 |||||||||||| |||| ||||||||||| ||||| |||||||||||| | | | | Sbjct 714 TGGGAAGCAGCATCCGTTGATGAATGGTTATACAACGGTGGTCCTTATGAACTAATTGTT 773 Query 172120 TTCCACTTCCTTATCGGTATCTCAGCATACATGGGAAGACAGTGGGAACTATCATACAGA 172179 | |||||| | | ||| | | | |||||||| | |||||||||| | | | Sbjct 774 CTACACTTCTTACTTGGTGTAGCTTCTTACATGGGTCGTGAGTGGGAACTTAGTTTCCGT 833 Query 172180 TTAGGTATGAGACCATGGATATGTGTAGCATATTCAGCACCTGTATCAGCAGCATTTGCT 172239 | |||||| |||| ||||| ||| |||||||| || ||||| |||| || ||| Sbjct 834 CTGGGTATGCGACCTTGGATTGCTGTTGCATATTCCGCTCCTGTTGCAGCTGCTACCGCT 893 Query 172240 GTGTTCCTTGTGTATCCATTCGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGGTATC 172299 || ||| | | || ||| ||||||| || || |||||||||||||| ||||| || Sbjct 894 GTTTTCTTGATCTACCCAATCGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATT 953 Query 172300 TCAGGTACGTTCAACTTTATGTTCGTGTTCCAAGCAGAGCATAACATTCTAATGCATCCT 172359 | ||||| |||||||| ||| | || ||||| || ||||| ||||| || ||||| || Sbjct 954 TATGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCCA 1013 Query 172360 TTCCACATGGCAGGAGTAGCAGGAATGTTTGGAGGATCTTTATTCTCAGCAATGCACGGT 172419 || |||||| ||| ||||| || | || || || || ||||| || ||||| ||| Sbjct 1014 TTTCACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGT 1073 Query 172420 TCTTTAGTTACATCTTCTCTAATCAGAGAGACAACTGAAGCAGAATCACAGAACTACGGA 172479 || || || || ||| | | ||||| || || || ||| ||||| || | || Sbjct 1074 TCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGT 1133 Query 172480 TACAAGTTCGGACAAGAAGAAGAAACATACAACATAGTAGCAGCACACGGTTACTTTGGT 172539 || | ||||| ||||| |||||||| || || || ||||| || || ||||| ||||| Sbjct 1134 TAGAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCCGCTCATGGTTATTTTGGC 1193 Query 172540 CGTCTTATCTTCCAGTATGCTTCTTTCAACAACTCAAGAAGTCTTCACTTCTTCCTAGCA 172599 || | |||||||| |||||| |||||||||||| | | |||||||||||||| Sbjct 1194 CGATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCGTTACACTTCTTCCTAGCT 1253 Query 172600 GTTTTCCCTGTTGTATGTGTATGGTTAACCTCTATGGGTATCTGTACAATGGCATTCAAC 172659 | || ||||| || || | ||||| || || | |||||| | || |||||||||||| Sbjct 1254 GCTTGGCCTGTAGTGGGTATCTGGTTCACTGCTTTAGGTATCAGCACTATGGCATTCAAC 1313 Query 172660 CTTAACGGTTTCAACTTCAACCAATCAGTTGTAGATGCTAACGGTAAGATTGTTCCTACA 172719 || || || ||||| ||||||||||| || || ||| | | || | || ||| Sbjct 1314 CTAAATGGCTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGCCGTGTAATTAATACT 1373 Query 172720 TGGGGTGACGTTCTTAACAGAGCAAACCTAGGTATGG 172756 |||| ||| | | ||| | || ||||| ||||||| Sbjct 1374 TGGGCTGATATCATCAACCGTGCTAACCTTGGTATGG 1410 >seq21 Length=7990 Score = 399 bits (442), Expect = 3e-106 Identities = 711/1038 (68%), Gaps = 21/1038 (2%) Strand=Plus/Plus Query 172951 TTTGATGTTCTTGACGACTGGTTAAAGAGAGATCGTTTCGTATTCATCGGATGGTCTGGT 173010 |||||| || | || ||||||||| ||| || |||||||| || | || ||||| ||| Sbjct 1044 TTTGATATTATGGATGACTGGTTACGGAGGGACCGTTTCGTTTTTGTAGGTTGGTCCGGT 1103 Query 173011 CTTTTACTTCTACCTTGTGCTTACCTTTCTATCGGTGGTTGGTTCTTAGGAACTACCTTC 173070 || || || | |||||||| || | || | || ||||||||| ||| || ||||| Sbjct 1104 CTATTGCTCTTTCCTTGTGCCTATTTCGCTTTAGGGGGTTGGTTCACAGGTACAACCTTT 1163 Query 173071 GTTACATCATGGTATACACATGGTATTGCATCTTCATATCTTGAAGGAGCAAACTTTTTA 173130 || || ||||||||||| ||||| | || ||| ||| | ||||| || || ||| Sbjct 1164 GTAACTTCATGGTATACCCATGGGTTGGCCAGTTCCTATTTGGAAGGCTGTAATTTCTTA 1223 Query 173131 ACAGCAGCAGTCTCCACACCTGGCGACGCAATGGGTCATAGTCTTCTGTTCCTTTGGGGA 173190 ||||| ||||| || || |||| | | | ||| | | |||| || ||||| Sbjct 1224 ACAGCCGCAGTTTCTACTCCTGCTAATAGTTTAGCGCATTCTTTATTGTTACTATGGGGT 1283 Query 173191 CCTGAAGCACAAGGTTCATTCGTACGTTGGTTACAACTCGGAGGACTATGGAACTTTGTA 173250 |||||||||||||| || ||||||| ||| | || || || |||| ||||| Sbjct 1284 CCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGCGGTCTGTGGACTTTTGTT 1343 Query 173251 GCATTACATGGAGTCTTTGGACTCATAGGTTTCATGCTCCGTCAGTTTGAGATCGCAGGA 173310 || | ||||| | |||||||| |||||||||||| | ||||| |||||| | || || Sbjct 1344 GCTCTGCATGGCGCTTTTGGACTAATAGGTTTCATGTTACGTCAATTTGAGCTTGCCCGA 1403 Query 173311 CTTGTAGGCATCAGACCTTACAACGCACTCGCATTCTCTGCTGTTATCGCAGTCTTCACT 173370 ||| | ||||||| || ||| |||||||||||| || || || || | Sbjct 1404 TCTGTTCAATTGCGACCTTATAATGCAATCGCATTCTCTGGCCCAATTGCTGTTTTTGTT 1463 Query 173371 AGCATCTTTTTAATCTACCCACTAGGGCAGCACAGTTGGTTCTTCGCACCTTCATTCGGT 173430 | || | || || |||||||||||| |||||||||| |||||| || ||| Sbjct 1464 TCTGTATTCCTGATTTATCCACTAGGGCAGTCTGGTTGGTTCTTTGCACCTAGTTTTGGT 1523 Query 173431 GTCGCAGCAATCTTTCGTTATATCTTATTCATACAAGGTTTCCACAACATTACATTGAAT 173490 || ||||| || ||| | | ||| | || | ||||| || || || || |||| Sbjct 1524 GTAGCAGCTATATTTAGATTCATCCTCTTTTTTCAAGGATTTCATAATTGGACGCTGAAC 1583 Query 173491 CCATTTCACATGATGGGTGTTGCAGGAATACTAGGTGGAGCATTACTATGTGCCATTCAT 173550 |||||||| |||||||| ||||| || || | || | || || ||||| || |||||| Sbjct 1584 CCATTTCATATGATGGGAGTTGCCGGTGTATTGGGCGCTGCTTTGCTATGCGCTATTCAT 1643 Query 173551 GGTGCAACAGTGCAGAACACATTGTATGAAGACACATCACAATATACTGAAGGTAAGATT 173610 ||||| || || | || || || | ||||| || ||| || | Sbjct 1644 GGTGCTACTGTAGAAAATACTTTATTTGAAG------------ATGGTGATGG-----TG 1686 Query 173611 CAATCCACAACTTTCAGAGCATTTGATCCTACACAGGAAGAAGAAACTTATAGTATGATT 173670 ||| | | |||| | || ||| | || || || | |||||||| ||| ||| | Sbjct 1687 CAA---ATACATTTC-GTGCTTTTAACCCAACTCAAGCGGAAGAAACCTATTCCATGGTC 1742 Query 173671 ACAGCGAACAGATTCTGGTCACAGATATTTGGTATCGCATTTTCAAACAAAAGATTTTTA 173730 || |||||| | || ||||| || || ||||| | || ||||| || ||| | | ||| Sbjct 1743 ACTGCGAACCGCTTTTGGTCCCAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTA 1802 Query 173731 CACTTCCTCATGTTGTTCGTACCTGTCATGGGTATGTGGACATCATCCATAGGTATCGTA 173790 || ||| | ||||| || ||||| || | ||| | |||| | | || | || Sbjct 1803 CATTTCTTTATGTTATTTGTACCAGTAACCGGTTTATGGATGAGTGCTCTTGGAGTAGTC 1862 Query 173791 GGTCTTGCACTTAACCTTAGAGCATACGACTTTGTATCTCAAGAGATAAGAGCAGCAGAA 173850 ||| | || || ||||| | || |||||||| || ||||| || || | ||||| ||| Sbjct 1863 GGTTTGGCCCTGAACCTACGTGCCTACGACTTCGTTTCTCAGGAAATTCGCGCAGCGGAA 1922 Query 173851 GATCCAGAGTTCGAGACTTTCTACACTAAGAATATACTTCTTAATGAAGGTATGAGAGCA 173910 ||||| || || |||||||||||||| || ||||| || | || |||||||| | || Sbjct 1923 GATCCTGAATTTGAGACTTTCTACACCAAAAATATTCTATTAAACGAAGGTATTCGCGCT 1982 Query 173911 TGGATGTCATCTGTAGATCAACCACATGAGAACTTCGTATTTCCAGAAGAAGTGTTACCA 173970 |||||| | || |||||| || ||||| ||| | |||| || || || || ||||| Sbjct 1983 TGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCA 2042 Query 173971 AGAGGTAACGCACTTTAA 173988 | || ||||| |||||| Sbjct 2043 CGTGGAAACGCTCTTTAA 2060 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588001502322960