Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Penstemon_20centranthifolius_20[genbank_20GCA_5F000737435.1_202014- 08-04] 6,761 sequences; 4,471,593 total letters Query= NC_015287.1 Length=232878 Score E Sequences producing significant alignments: (Bits) Value seq131 524 1e-143 seq5 477 1e-129 >seq131 Length=2205 Score = 524 bits (580), Expect = 1e-143 Identities = 714/994 (72%), Gaps = 2/994 (0%) Strand=Plus/Minus Query 215294 TTTTGTGAGTGGGTTACTTCTACTGACAATCGTATCTACGTTGGTTGGTTTGGTGTCCTC 215353 || ||| | ||| | ||| ||| || || ||| | ||| | || ||||||||||| | Sbjct 1330 TTCTGTAACTGGATAACTAGTACCGAAAACCGTCTTTACATCGGATGGTTTGGTGTTTTG 1271 Query 215354 ATGATTCCTTGCCTCCTCGCAGCTACCACT-TGTTTCATCGTAGCATTCATCGCTGCACC 215412 ||||| ||| | | | | || || || ||||| || | || ||||| || || || Sbjct 1270 ATGATCCCTACCTTATTGACCGCAACTTCTGTGTTT-ATTATTGCCTTCATTGCCGCTCC 1212 Query 215413 TCCTGTCGATATCGACGGAATCAGAGAGCCAGTTGCTGGTTCTTTAATGTATGGTAACAA 215472 ||| || ||||| || || || | || || ||| |||| ||| || | || || ||||| Sbjct 1211 TCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTACGGAAACAA 1152 Query 215473 CATCATCTCTGGTGCTGTTGTACCTAGTTCAAACGCAATCGGATTACACTTCTACCCTAT 215532 || ||||| ||||| || | |||| ||| || ||||| || ||||| || || || Sbjct 1151 TATTATCTCAGGTGCCATTATTCCTACTTCTGCAGCTATCGGTTTGCACTTTTATCCAAT 1092 Query 215533 CTGGGAAGCAGCAACAGTTGACGAATGGCTCTACAATGGTGGACCTTTCCAACTGGTTAT 215592 |||||||||||| | ||||| |||||| | ||||||||||| |||| |||| || | Sbjct 1091 TTGGGAAGCAGCATCCGTTGATGAATGGTTATACAATGGTGGTCCTTATGAACTAATTGT 1032 Query 215593 CTTCCACTTCCTCATTGGTATTTCTGCATACTGCGGAAGACAGTGGGAACTTTCTTACAG 215652 | |||||| | ||||| | || ||| || | ||||||| ||| || | | Sbjct 1031 TCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAGCTTAGTTTCCG 972 Query 215653 ATTAGGTATGAGACCTTGGATCTGTGTTGCTTACTCCGCACCTGTATCTGCTGCCTTTGC 215712 | |||||| |||||||||| |||||| || || || ||||| | ||||| || Sbjct 971 TCTGGGTATGCGACCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACCGC 912 Query 215713 AGTATTCCTTGTGTATCCATTCGGTCAGGGTTCTTTCTCTGATGCTATGCCACTTGGAAT 215772 || ||| | | || ||| | ||||| || ||| ||||||| |||||| || ||||| Sbjct 911 TGTTTTCTTGATCTACCCAATTGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAAT 852 Query 215773 CTCTGGAACATTCAACTACATGTTTGTTTTCCAGGCTGAGCACAACATTCTGATGCACCC 215832 ||||| || ||||||| |||| |||| |||||||||||||||||||| || ||||| || Sbjct 851 TTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCATCC 792 Query 215833 ATTCCACATGTTAGGTGTGGCTGGTGTCTTCGGTGGTTCATTGTTCTCTGCAATGCACGG 215892 ||| ||||||||||| || |||||||| ||||| ||||| | ||| ||| ||||| || Sbjct 791 ATTTCACATGTTAGGCGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGG 732 Query 215893 TTCACTTGTTACATCTTCTCTAATCAGAGAGACAACTGAGCAAGAATCTCAGAACTACGG 215952 ||| | || || ||| | | ||||| || || || || | |||||| || | || Sbjct 731 TTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGG 672 Query 215953 TTACAAGTTCGGACAAGAGGAGGAAACATACAACATCGTAGCTGCACACGGTTACTTTGG 216012 ||||| ||||| |||||||| ||||| || || |||||||| || || ||||| ||||| Sbjct 671 TTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCCGCTCATGGTTATTTTGG 612 Query 216013 TCGCCTCATCTTCCAATACGCATCTTTCAACAACTCAAGAAGTCTTCACTTCTTCCTTGC 216072 || | ||||||||||| || |||||||||||| | | ||||||||||| || Sbjct 611 CCGATTGATCTTCCAATATGCTAGTTTCAACAACTCGCGTTCGTTACACTTCTTCCTAGC 552 Query 216073 AGCATTCCCTGTTATTTGTATCTGGGCAACTGCAATGGGTGTCTCAACTATGGCGTTCAA 216132 || | ||||| | |||||||| ||||| | ||| || |||||||| ||||| Sbjct 551 TGCTTGGCCTGTAGTGGGTATCTGGTTCACTGCTTTAGGTATCAGTACTATGGCATTCAA 492 Query 216133 CCTTAACGGTTTCAACTTCAACCAGTCTGTCGTAGACGCATCTGGTAAAGTTATTCCTAC 216192 ||| || |||||||| || ||||| ||||| || || || || ||| ||| Sbjct 491 CCTAAATGGTTTCAATTTTAACCAATCTGTAGTTGATAGCCAAGGCCGTGTAATTAATAC 432 Query 216193 TTGGGCAGACGTTCTTAACAGAGCAGGACTTGGTATGGAAGTAATGCACGAGCGTAACGC 216252 |||||| || || | ||| | || || ||||||||||| ||||| || ||||| || Sbjct 431 TTGGGCTGATATTATCAACCGTGCTAACCTGGGTATGGAAGTTATGCATGAACGTAATGC 372 Query 216253 TCACAACTTCCCATTAGACTTGGCTGCTGCTGAA 216286 ||| |||||||| |||| | ||||||| |||| Sbjct 371 TCATAACTTCCCTCTAGATCTAGCTGCTGTTGAA 338 >seq5 Length=20976 Score = 477 bits (528), Expect = 1e-129 Identities = 618/854 (72%), Gaps = 0/854 (0%) Strand=Plus/Plus Query 215315 ACTGACAATCGTATCTACGTTGGTTGGTTTGGTGTCCTCATGATTCCTTGCCTCCTCGCA 215374 || || || ||| | ||| |||| ||||| ||||| | ||||| ||| | | | | Sbjct 495 ACCGAAAACCGTCTTTACATTGGATGGTTCGGTGTTTTGATGATCCCTACCTTATTGACC 554 Query 215375 GCTACCACTTGTTTCATCGTAGCATTCATCGCTGCACCTCCTGTCGATATCGACGGAATC 215434 || || | || || | || ||||| ||||| ||||| || ||||| || || || Sbjct 555 GCAACTTCGGTATTTATTATTGCCTTCATTGCTGCTCCTCCAGTAGATATTGATGGTATT 614 Query 215435 AGAGAGCCAGTTGCTGGTTCTTTAATGTATGGTAACAACATCATCTCTGGTGCTGTTGTA 215494 | || || ||| |||| ||| || | || || ||||| || |||| ||||| || | Sbjct 615 CGTGAACCTGTTTCTGGATCTCTACTTTACGGAAACAATATTCTCTCAGGTGCCATTATT 674 Query 215495 CCTAGTTCAAACGCAATCGGATTACACTTCTACCCTATCTGGGAAGCAGCAACAGTTGAC 215554 |||| ||| || ||||| || ||||| ||||| ||||||||||||||| | ||||| Sbjct 675 CCTACTTCTGCAGCTATCGGTTTGCACTTTTACCCAATCTGGGAAGCAGCATCCGTTGAT 734 Query 215555 GAATGGCTCTACAATGGTGGACCTTTCCAACTGGTTATCTTCCACTTCCTCATTGGTATT 215614 |||||| | ||||| ||||| |||| |||| || | | |||||| | ||||| | Sbjct 735 GAATGGTTATACAACGGTGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGTGTA 794 Query 215615 TCTGCATACTGCGGAAGACAGTGGGAACTTTCTTACAGATTAGGTATGAGACCTTGGATC 215674 || | ||| || | ||||||||||| || | | | |||||| |||||||||| Sbjct 795 GCTTCTTACATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGACCTTGGATT 854 Query 215675 TGTGTTGCTTACTCCGCACCTGTATCTGCTGCCTTTGCAGTATTCCTTGTGTATCCATTC 215734 |||||| || ||||| ||||| | ||||| || || ||| | | || ||| || Sbjct 855 GCTGTTGCATATTCCGCTCCTGTTGCAGCTGCTACCGCTGTTTTCTTGATCTACCCAATC 914 Query 215735 GGTCAGGGTTCTTTCTCTGATGCTATGCCACTTGGAATCTCTGGAACATTCAACTACATG 215794 ||||| || ||| ||||||| |||||| || ||||| | ||| || ||||||| |||| Sbjct 915 GGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATTTATGGTACTTTCAACTTCATG 974 Query 215795 TTTGTTTTCCAGGCTGAGCACAACATTCTGATGCACCCATTCCACATGTTAGGTGTGGCT 215854 |||| |||||||||||||||||||| || ||||||||||| ||||||||||| || ||| Sbjct 975 ATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAGGCGTAGCT 1034 Query 215855 GGTGTCTTCGGTGGTTCATTGTTCTCTGCAATGCACGGTTCACTTGTTACATCTTCTCTA 215914 ||||| ||||| || || | ||| ||| ||||| ||||| | || || ||| | | Sbjct 1035 GGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACTTCTAGTTTG 1094 Query 215915 ATCAGAGAGACAACTGAGCAAGAATCTCAGAACTACGGTTACAAGTTCGGACAAGAGGAG 215974 ||||| || || || || | |||||| || | ||||| | ||||| |||||||| Sbjct 1095 ATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTAGAGATTCGGTCAAGAGGAA 1154 Query 215975 GAAACATACAACATCGTAGCTGCACACGGTTACTTTGGTCGCCTCATCTTCCAATACGCA 216034 ||||| || || |||||||| || || ||||| ||||| || | ||||||||||| || Sbjct 1155 GAAACTTATAATATCGTAGCCGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCT 1214 Query 216035 TCTTTCAACAACTCAAGAAGTCTTCACTTCTTCCTTGCAGCATTCCCTGTTATTTGTATC 216094 |||||||||||| | | ||||||||||| || || | ||||| | ||||| Sbjct 1215 AGTTTCAACAACTCTCGTTCGTTACACTTCTTCCTAGCTGCTTGGCCTGTAGTGGGTATC 1274 Query 216095 TGGGCAACTGCAATGGGTGTCTCAACTATGGCGTTCAACCTTAACGGTTTCAACTTCAAC 216154 ||| ||||| | ||| || |||||||| |||||||| || || ||||| |||||| Sbjct 1275 TGGTTCACTGCTTTAGGTATCAGCACTATGGCATTCAACCTAAATGGCTTCAATTTCAAC 1334 Query 216155 CAGTCTGTCGTAGA 216168 || ||||| || || Sbjct 1335 CAATCTGTAGTTGA 1348 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 745018631291280