Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Penstemon_20centranthifolius_20[genbank_20GCA_5F000737435.1_202014- 08-04] 6,761 sequences; 4,471,593 total letters Query= NC_015288.1 Length=191195 Score E Sequences producing significant alignments: (Bits) Value seq131 636 2e-177 seq5 569 2e-157 seq21 553 2e-152 >seq131 Length=2205 Score = 636 bits (704), Expect = 2e-177 Identities = 730/976 (75%), Gaps = 8/976 (1%) Strand=Plus/Minus Query 181814 TACCAACAATCGTCTCTATGTCGGTTGGTTTGGTGTGCTGATGATCCCAACTCTGTTGGC 181873 |||| | || ||||| || |||| ||||||||||| |||||||||| || | ||| | Sbjct 1310 TACCGAAAACCGTCTTTACATCGGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGAC 1251 Query 181874 GGCAACCATCTGT-TTCATCGTTGCTTTCGTAGCAGCACCTCCTGTCGATATCGACGGTA 181932 ||||| ||||| || || |||| ||| | || || ||||| || ||||| || |||| Sbjct 1250 CGCAACT-TCTGTGTTTATTATTGCCTTCATTGCCGCTCCTCCAGTAGATATTGATGGTA 1192 Query 181933 TCCGCGAACCCGTAGCTGGTTCACTCATGTATGGTAACAACATCATCTCTGGTGCTGTTG 181992 | || ||||| || |||| || || | || || ||||| || ||||| ||||| || Sbjct 1191 TTCGTGAACCTGTTTCTGGATCTCTACTTTACGGAAACAATATTATCTCAGGTGCCATTA 1132 Query 181993 TCCCATCCTCCAACGCAATTGGTCTTCACTTCTACCCAATCTGGGAAGCTGCCTCACTTG 182052 | || | || || || ||| | ||||| || ||||| |||||||| || || ||| Sbjct 1131 TTCCTACTTCTGCAGCTATCGGTTTGCACTTTTATCCAATTTGGGAAGCAGCATCCGTTG 1072 Query 182053 ATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTGGTTGTTTTCCACTTCCTGATCGGCA 182112 |||| ||| | || || |||||||||| |||| ||||| | |||||| | | || Sbjct 1071 ATGAATGGTTATACAATGGTGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGG-- 1014 Query 182113 TCTACGCCT---ACATGGGACGTGAGTGGGAACTTTCTTACCGCTTAGGTATGCGTCCCT 182169 | || || | ||||||| ||||||||||| ||| || ||| | |||||||| || | Sbjct 1013 TGTA-GCTTGTTACATGGGTCGTGAGTGGGAGCTTAGTTTCCGTCTGGGTATGCGACCTT 955 Query 182170 GGATCTGTGTAGCATACTCTGCTCCAGTCGCTGCAGCATCTGCTGTATTCTTAGTCTATC 182229 |||| ||| ||||| || ||||| || || || || | ||||| ||||| |||| | Sbjct 954 GGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACCGCTGTTTTCTTGATCTACC 895 Query 182230 CTTTCGGTCAAGGTTCGTTCTCCGATGCAATGCCCCTCGGAATCTCAGGAACATTCAACT 182289 | | |||||||| || || |||| ||||| || ||||| || || || ||||||| Sbjct 894 CAATTGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACT 835 Query 182290 ATATGTTGGTTTTCCAAGCTGAGCACAACATTCTTATGCATCCCTTCCACATGTTGGGTG 182349 ||| | || ||||| |||||||||||||| ||||||||||| || |||||||| || | Sbjct 834 TCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCATCCATTTCACATGTTAGGCG 775 Query 182350 TAGCAGGTGTATTCGGTGGTTCACTGTTTAGTGCAATGCACGGTTCTTTGGTTACATCTT 182409 |||| ||||||||||| ||||| || || ||||| ||||| ||||| ||||| || ||| Sbjct 774 TAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACTTCTA 715 Query 182410 CACTCGTCCGTGAGACGACTGAGCAAGAGTCACAGAACTATGGTTACAAGTTCGGTCAAG 182469 | || | || || || || | || || || | ||||||| |||||||||| Sbjct 714 GTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAG 655 Query 182470 AAGAAGAGACCTATAACATCGTTGCAGCCCATGGCTACTTCGGTCGTTTGATCTTCCAAT 182529 | ||||| || ||||| ||||| || || ||||| || || || || ||||||||||||| Sbjct 654 AGGAAGAAACTTATAATATCGTAGCCGCTCATGGTTATTTTGGCCGATTGATCTTCCAAT 595 Query 182530 ACGCATCATTCAACAACTCCCGTTCCTTGCACTTCTTCCTTGCTGCATGGCCTGTTGTTG 182589 | || ||||||||||| ||||| || ||||||||||| ||||| |||||||| || | Sbjct 594 ATGCTAGTTTCAACAACTCGCGTTCGTTACACTTCTTCCTAGCTGCTTGGCCTGTAGTGG 535 Query 182590 GAATCTGGTTCACCGCACTTGGTGTCTCCACGATGGCATTCAACCTCAACGGTTTCAACT 182649 | ||||||||||| || | ||| || || |||||||||||||| || |||||||| | Sbjct 534 GTATCTGGTTCACTGCTTTAGGTATCAGTACTATGGCATTCAACCTAAATGGTTTCAATT 475 Query 182650 TCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTCCTTAACACTTGGGCAGATGTATTGA 182709 | ||||| || | ||||| | || || ||||| |||| |||||||| ||| | | | Sbjct 474 TTAACCAATCTGTAGTTGATAGCCAAGGCCGTGTAATTAATACTTGGGCTGATATTATCA 415 Query 182710 ACCGTGCTGGTCTTGGTATGGAAGTTATGCATGAGCGTAACGCACACAACTTCCCACTAG 182769 |||||||| || |||||||||||||||||||| ||||| || || |||||||| |||| Sbjct 414 ACCGTGCTAACCTGGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCTCTAG 355 Query 182770 ATCTTGCTGCTGCTGA 182785 |||| ||||||| ||| Sbjct 354 ATCTAGCTGCTGTTGA 339 >seq5 Length=20976 Score = 569 bits (630), Expect = 2e-157 Identities = 678/917 (74%), Gaps = 2/917 (0%) Strand=Plus/Plus Query 181815 ACCAACAATCGTCTCTATGTCGGTTGGTTTGGTGTGCTGATGATCCCAACTCTGTTGGCG 181874 ||| | || ||||| || | || ||||| ||||| |||||||||| || | ||| | Sbjct 495 ACCGAAAACCGTCTTTACATTGGATGGTTCGGTGTTTTGATGATCCCTACCTTATTGACC 554 Query 181875 GCAACCATCTGT-TTCATCGTTGCTTTCGTAGCAGCACCTCCTGTCGATATCGACGGTAT 181933 ||||| || || || || |||| ||| | || || ||||| || ||||| || ||||| Sbjct 555 GCAACT-TCGGTATTTATTATTGCCTTCATTGCTGCTCCTCCAGTAGATATTGATGGTAT 613 Query 181934 CCGCGAACCCGTAGCTGGTTCACTCATGTATGGTAACAACATCATCTCTGGTGCTGTTGT 181993 || ||||| || |||| || || | || || ||||| || |||| ||||| || | Sbjct 614 TCGTGAACCTGTTTCTGGATCTCTACTTTACGGAAACAATATTCTCTCAGGTGCCATTAT 673 Query 181994 CCCATCCTCCAACGCAATTGGTCTTCACTTCTACCCAATCTGGGAAGCTGCCTCACTTGA 182053 || | || || || ||| | ||||| ||||||||||||||||| || || |||| Sbjct 674 TCCTACTTCTGCAGCTATCGGTTTGCACTTTTACCCAATCTGGGAAGCAGCATCCGTTGA 733 Query 182054 TGAGTGGCTGTATAACGGTGGTCCTTTCCAACTGGTTGTTTTCCACTTCCTGATCGGCAT 182113 ||| ||| | || ||||||||||||| |||| ||||| | |||||| | | || | Sbjct 734 TGAATGGTTATACAACGGTGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGTGT 793 Query 182114 CTACGCCTACATGGGACGTGAGTGGGAACTTTCTTACCGCTTAGGTATGCGTCCCTGGAT 182173 | |||||||| ||||||||||||||| || ||| | |||||||| || ||||| Sbjct 794 AGCTTCTTACATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGACCTTGGAT 853 Query 182174 CTGTGTAGCATACTCTGCTCCAGTCGCTGCAGCATCTGCTGTATTCTTAGTCTATCCTTT 182233 ||| ||||| || ||||| || || || || | ||||| ||||| |||| || | Sbjct 854 TGCTGTTGCATATTCCGCTCCTGTTGCAGCTGCTACCGCTGTTTTCTTGATCTACCCAAT 913 Query 182234 CGGTCAAGGTTCGTTCTCCGATGCAATGCCCCTCGGAATCTCAGGAACATTCAACTATAT 182293 ||||||||| || || |||| ||||| || ||||| | || || ||||||| || Sbjct 914 CGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATTTATGGTACTTTCAACTTCAT 973 Query 182294 GTTGGTTTTCCAAGCTGAGCACAACATTCTTATGCATCCCTTCCACATGTTGGGTGTAGC 182353 | | || ||||| |||||||||||||| |||||||| || || |||||||| || ||||| Sbjct 974 GATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAGGCGTAGC 1033 Query 182354 AGGTGTATTCGGTGGTTCACTGTTTAGTGCAATGCACGGTTCTTTGGTTACATCTTCACT 182413 ||||||||||| || || || || ||||| ||||| ||||| ||||| || ||| | Sbjct 1034 TGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACTTCTAGTTT 1093 Query 182414 CGTCCGTGAGACGACTGAGCAAGAGTCACAGAACTATGGTTACAAGTTCGGTCAAGAAGA 182473 || | || || || || | || || || | ||||| | ||||||||||| || Sbjct 1094 GATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTAGAGATTCGGTCAAGAGGA 1153 Query 182474 AGAGACCTATAACATCGTTGCAGCCCATGGCTACTTCGGTCGTTTGATCTTCCAATACGC 182533 ||| || ||||| ||||| || || ||||| || || || || |||||||||||||| || Sbjct 1154 AGAAACTTATAATATCGTAGCCGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGC 1213 Query 182534 ATCATTCAACAACTCCCGTTCCTTGCACTTCTTCCTTGCTGCATGGCCTGTTGTTGGAAT 182593 ||||||||||| ||||| || ||||||||||| ||||| |||||||| || || || Sbjct 1214 TAGTTTCAACAACTCTCGTTCGTTACACTTCTTCCTAGCTGCTTGGCCTGTAGTGGGTAT 1273 Query 182594 CTGGTTCACCGCACTTGGTGTCTCCACGATGGCATTCAACCTCAACGGTTTCAACTTCAA 182653 ||||||||| || | ||| || ||| |||||||||||||| || || ||||| ||||| Sbjct 1274 CTGGTTCACTGCTTTAGGTATCAGCACTATGGCATTCAACCTAAATGGCTTCAATTTCAA 1333 Query 182654 CCAGTCCATCCTTGATGGTCAGGGTCGTGTCCTTAACACTTGGGCAGATGTATTGAACCG 182713 ||| || | ||||| |||| || ||||| |||| |||||||| ||| | | ||||| Sbjct 1334 CCAATCTGTAGTTGATAGTCAAGGCCGTGTAATTAATACTTGGGCTGATATCATCAACCG 1393 Query 182714 TGCTGGTCTTGGTATGG 182730 |||| |||||||||| Sbjct 1394 TGCTAACCTTGGTATGG 1410 >seq21 Length=7990 Score = 553 bits (612), Expect = 2e-152 Identities = 729/1008 (72%), Gaps = 2/1008 (0%) Strand=Plus/Plus Query 183193 GATGACTGGGTTAAACGCGATCGCTTTGTCTTTGTGGGCTGGTCTGGACTCCTACTTCTT 183252 ||||||||| | | || || || || ||||| || ||||| || || | || || Sbjct 1056 GATGACTGGTTACGGAGGGACCGTTTCGTTTTTGTAGGTTGGTCCGGTCTATTGCTCTTT 1115 Query 183253 CCCACTGCTTATCTTGCCATTGGCGGTTGGCTTACTGGCACAGCTTTTGTTACGAGTTGG 183312 || ||| ||| | || | || |||||| | || || ||| | ||||| || ||| Sbjct 1116 CCTTGTGCCTATTTCGCTTTAGGGGGTTGGTTCACAGGTACAACCTTTGTAACTTCATGG 1175 Query 183313 TATACCCATGGACTTGCTTCTTCCTATCTTGAAGGTGCTAACTTTCTT-ACGGCAGCTGT 183371 ||||||||||| | || ||||||| | ||||| ||| |||||| || || || || Sbjct 1176 TATACCCATGGGTTGGCCAGTTCCTATTTGGAAGGCTGTAA-TTTCTTAACAGCCGCAGT 1234 Query 183372 CTCGACGCCTGCTGACGCTATGGGTCATTCTCTTCTGTTACTTTGGGGTCCTGAGTCTCA 183431 || || |||||| | | | | |||||| | ||||||| ||||||||||| | || Sbjct 1235 TTCTACTCCTGCTAATAGTTTAGCGCATTCTTTATTGTTACTATGGGGTCCTGAAGCACA 1294 Query 183432 AGGGGACTTTCAACGCTGGTGCCAACTTGGGGGACTCTGGAATTTTGTGGCACTCCACGG 183491 ||| || ||| || ||||| ||| | || || || |||| |||||| || || || || Sbjct 1295 AGGAGATTTTACTCGTTGGTGTCAATTAGGCGGTCTGTGGACTTTTGTTGCTCTGCATGG 1354 Query 183492 TGCCTTTGCTCTCATTGGTTTCATGCTTCGACAGTTTGAACTTGCTCGCTTGATTGGTAT 183551 || |||| || || ||||||||| | || || ||||| ||||| || | || | Sbjct 1355 CGCTTTTGGACTAATAGGTTTCATGTTACGTCAATTTGAGCTTGCCCGATCTGTTCAATT 1414 Query 183552 CCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTGTCAGTGTATTCCT 183611 || ||||| ||||| || || |||||||| || |||||||||||||| ||||||||| Sbjct 1415 GCGACCTTATAATGCAATCGCATTCTCTGGCCCAATTGCTGTTTTTGTTTCTGTATTCCT 1474 Query 183612 TATCTATCCACTGGGTCAGTCTTCATGGTTCTTTGCACCTAGTTTCGGGGTAGCAGCAAT 183671 || |||||||| || |||||| |||||||||||||||||||| || |||||||| || Sbjct 1475 GATTTATCCACTAGGGCAGTCTGGTTGGTTCTTTGCACCTAGTTTTGGTGTAGCAGCTAT 1534 Query 183672 CTTTAGATTCCTATTGTTCCTTCAGGGTTTCCACAACTGGACGTTAAACCCCTTCCATAT 183731 ||||||||| | | || |||| || || || || |||||| | ||||| || ||||| Sbjct 1535 ATTTAGATTCATCCTCTTTTTTCAAGGATTTCATAATTGGACGCTGAACCCATTTCATAT 1594 Query 183732 GATGGGAGTTGCTGGTATACTAGGAGGAGCACTACTCAGTGCTATCCATGGTGTCACAGT 183791 |||||||||||| ||| || | || | || | || | ||||| ||||||| || || Sbjct 1595 GATGGGAGTTGCCGGTGTATTGGGCGCTGCTTTGCTATGCGCTATTCATGGTGCTACTGT 1654 Query 183792 AGAGAATACATTGTATGAAGATGGAGAACAAGCAAACACATTCAAGGCATTTGATTCCAC 183851 ||| ||||| || | ||||||||| || ||||| ||||| || ||| | | || Sbjct 1655 AGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTTCGTGCTTTTAACCCAAC 1714 Query 183852 TCAAGAAGAAGAGACGTATTCTATGGTTACAGCGAATCGTTTCTGGTCACAAATCTTCGG 183911 ||||| ||||| || ||||| ||||| || ||||| || || ||||| |||||||| || Sbjct 1715 TCAAGCGGAAGAAACCTATTCCATGGTCACTGCGAACCGCTTTTGGTCCCAAATCTTTGG 1774 Query 183912 GGTTGCGTTTAGCAATAAGCGTTGGTTGCACTTCTTTATGTTGTTTGTTCCTGTCATGGG 183971 |||||| ||| |||||| |||||||| || ||||||||||| ||||| || || | || Sbjct 1775 GGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACCGG 1834 Query 183972 TCTTTGGGTCTCTTCTATTGGCATCATTGGGCTTGCTCTTAATCTTCGTGCTTATGATTT 184031 | | ||| | | || |||| | | || | || || || || ||||| || || || Sbjct 1835 TTTATGGATGAGTGCTCTTGGAGTAGTCGGTTTGGCCCTGAACCTACGTGCCTACGACTT 1894 Query 184032 TGTAAGTCAAGAGATCAGAGCAGCAGAAGATCCAGAATTTGAGACGTTCTACACAAAGAA 184091 || ||| || || | ||||| |||||||| ||||||||||| |||||||| || || Sbjct 1895 CGTTTCTCAGGAAATTCGCGCAGCGGAAGATCCTGAATTTGAGACTTTCTACACCAAAAA 1954 Query 184092 CATACTTCTTAATGAAGGACTACGTGCATGGTTAGCACCTTCTGATCAACCACATGAGAA 184151 || || | || ||||| | || || ||| | || || ||||| || ||||| || Sbjct 1955 TATTCTATTAAACGAAGGTATTCGCGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAA 2014 Query 184152 TTTTATATTTCCAGAGGAGGTATTACCTAGAGGCAATGCTCTTTGATG 184199 ||||||| || |||||||| |||| | || || ||||||| ||| Sbjct 2015 CCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCTTTAATG 2062 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 611644304041800